Gvermi6015.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi6015.t1
Unique NameGvermi6015.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length183
Homology
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BLAST of Gvermi6015.t1 vs. uniprot
Match: A0A2V3IJP4_9FLOR (Ribonuclease P protein component 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJP4_9FLOR)

HSP 1 Score: 195 bits (496), Expect = 1.210e-60
Identity = 96/129 (74.42%), Postives = 109/129 (84.50%), Query Frame = 0 
Query:    1 MGRKRYDKGGAKKKKAPREEDAALRLNHLIAASTILSEKSPSVAKFYAHASKQICRRVNITLDSVSVKRLFCKKCNGSLLPGVGDAPPTYRIASRRERHLVVRCGNCGFVKRYLARMPGHACRKGKKGK 129
            M RKR+DK GAKKKK PREEDAALRL HLIAAS ILSE +PSV++FYAHASKQICRRVN+TLDSV+VKRLFCKKCN  L+PGVG   PTYRIASRRERHLV++CG CG +KRYLAR P    ++ +K K
Sbjct:    1 MTRKRFDKAGAKKKKIPREEDAALRLTHLIAASAILSENAPSVSRFYAHASKQICRRVNMTLDSVTVKRLFCKKCNTCLIPGVGTPQPTYRIASRRERHLVIKCGRCGVLKRYLARSPAQESKRKRKDK 129
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BLAST of Gvermi6015.t1 vs. uniprot
Match: A0A7J2H759_9CREN (Ribonuclease P protein component 4 n=2 Tax=Thermoprotei TaxID=183924 RepID=A0A7J2H759_9CREN)

HSP 1 Score: 53.1 bits (126), Expect = 5.810e-6
Identity = 27/93 (29.03%), Postives = 53/93 (56.99%), Query Frame = 0 
Query:   22 AALRLNHLIAASTILSEKSPSVAKFYAHASKQICRRVNITLDSVSVKRLFCKKCNGSLLPGVGDAPPTYRIASRRERHLVVRCGNCGFVKRYL 114
            A  R+  L++ +  + ++   +A+ Y   + ++  +  + L    V+R +C++C   L+PG+       R+ SRR+RH+VV C  CG+V+RY+
Sbjct:   11 ARQRIWILLSLADNVVKRDQELARRYVALALKLAAKARLRLPR-DVRRRYCRRCKVPLIPGL---TARVRVRSRRQRHIVVTCLKCGYVRRYV 99
The following BLAST results are available for this feature:
BLAST of Gvermi6015.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IJP4_9FLOR1.210e-6074.42Ribonuclease P protein component 4 n=1 Tax=Gracila... [more]
A0A7J2H759_9CREN5.810e-629.03Ribonuclease P protein component 4 n=2 Tax=Thermop... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007175Ribonuclease P subunit, Rpr2/Snm1/Rpp21PFAMPF04032Rpr2coord: 25..108
e-value: 1.0E-11
score: 44.9
NoneNo IPR availableGENE3D6.20.50.20coord: 69..115
e-value: 5.7E-13
score: 50.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 125..169
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 144..168
NoneNo IPR availablePANTHERPTHR14742:SF0RIBONUCLEASE P PROTEIN SUBUNIT P21coord: 10..141
NoneNo IPR availablePANTHERPTHR14742RIBONUCLEASE P SUBUNIT P21coord: 10..141

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1785502..1786050 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi6015.t1Gvermi6015.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 1785502..1786050 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi6015.t1 ID=Gvermi6015.t1|Name=Gvermi6015.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=183bp
MGRKRYDKGGAKKKKAPREEDAALRLNHLIAASTILSEKSPSVAKFYAHA
SKQICRRVNITLDSVSVKRLFCKKCNGSLLPGVGDAPPTYRIASRRERHL
VVRCGNCGFVKRYLARMPGHACRKGKKGKEAKSSEVNTSRTELGKLKSSE
EMQCKPTDDTDVARDQETTSRFQRYSSNCRIV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR007175Rpr2/Snm1/Rpp21