Gvermi5950.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5950.t1
Unique Name	Gvermi5950.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	278

Homology

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BLAST of Gvermi5950.t1 vs. uniprot
Match: A0A2V3IME0_9FLOR (Postreplication repair E3 ubiquitin-protein ligase RAD18 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IME0_9FLOR)

HSP 1 Score: 147 bits (371), Expect = 2.900e-38
Identity = 108/272 (39.71%), Postives = 151/272 (55.51%), Query Frame = 0

Query:   11 QSNVACLPLPGNLSRASLVKKLTSAGLNTSGNAAELKNRYREYVLRVNAASDSVCGASKEKLANDVKRHEAALSKPQKTVNVFIEKPKNGLTVQQGDNHDDLVRKIKQRKRLH--SSLTSPGDVNRDKCSDGEEKDEVDDYSSSQKTTKAMKRSRSTAG-----QSCGPQVKDGTAQNRQDSPNADLVTGAFI----QVALGSAAMNICPENRSPRKTLESDQSTTQETPPSTSNPLNLTQEQRERIHRHKMAAMERRRQNSQKYVRRLPFT 271
            ++ +A LPLPG+LSR +LVKKL+ AGL+  G    L NRYREYVLR NAA+DS  GASK+ LA+ V+R+E ALS  Q T++ F EK K+  TV++GDN +DLVRK +QR  +   S  T  G V   +  +G+ + ++          K ++  R  A      + C  Q   G    R  +        +      Q A+ SA+ +I P +         +++T     PST     LT+EQ ERI R+  AAME+R++NSQ YVRRL FT
Sbjct:  105 RTTLAQLPLPGSLSRPNLVKKLSKAGLSAVGTVEVLSNRYREYVLRYNAAADSASGASKQALADAVRRYEDALSANQATMDTFFEKVKDESTVKRGDNFEDLVRKTRQRNHVERRSQATQEG-VQNSRKPNGDPEPDIQPQKCDTSGGKRIRAPRDEANDIAPKRPCSGQAHIGRKTTRNGASPTRFSKASCSDKRSQHAVKSASFDIQPYSSYLDTPSSENKNTQLVATPSTKEAQALTREQEERIQRNMKAAMEKRQKNSQSYVRRLSFT 375

The following BLAST results are available for this feature:

BLAST of Gvermi5950.t1 vs. uniprot

BLAST of Gvermi5950.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IME0_9FLOR	2.900e-38	39.71	Postreplication repair E3 ubiquitin-protein ligase...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 241..262
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..151
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 218..240
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 119..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..188
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 207..277
IPR003034	SAP domain	PROSITE	PS50800	SAP	coord: 20..54 score: 8.507896

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_1708	contig	ScGOVlb_1708:1413728..1414561 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5950.t1	Gvermi5950.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_1708 1413728..1414561 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=278bp
MSRTPVPLRHQSNVACLPLPGNLSRASLVKKLTSAGLNTSGNAAELKNRY
REYVLRVNAASDSVCGASKEKLANDVKRHEAALSKPQKTVNVFIEKPKNG
LTVQQGDNHDDLVRKIKQRKRLHSSLTSPGDVNRDKCSDGEEKDEVDDYS
SSQKTTKAMKRSRSTAGQSCGPQVKDGTAQNRQDSPNADLVTGAFIQVAL
GSAAMNICPENRSPRKTLESDQSTTQETPPSTSNPLNLTQEQRERIHRHK
MAAMERRRQNSQKYVRRLPFTDTQEAG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR003034	SAP_dom