Gvermi5950.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5950.t1
Unique NameGvermi5950.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length278
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:1413728..1414561 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5950Gvermi5950Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1708 1413728..1414561 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5950.t1.stop1Gvermi5950.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1708 1413728..1413730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5950.t1.CDS1Gvermi5950.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1708 1413728..1414561 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5950.t1.exon1Gvermi5950.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1708 1413728..1414561 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5950.t1.start1Gvermi5950.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1708 1414559..1414561 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5950.t1Gvermi5950.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1708 1413728..1414561 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=278bp
MSRTPVPLRHQSNVACLPLPGNLSRASLVKKLTSAGLNTSGNAAELKNRY
REYVLRVNAASDSVCGASKEKLANDVKRHEAALSKPQKTVNVFIEKPKNG
LTVQQGDNHDDLVRKIKQRKRLHSSLTSPGDVNRDKCSDGEEKDEVDDYS
SSQKTTKAMKRSRSTAGQSCGPQVKDGTAQNRQDSPNADLVTGAFIQVAL
GSAAMNICPENRSPRKTLESDQSTTQETPPSTSNPLNLTQEQRERIHRHK
MAAMERRRQNSQKYVRRLPFTDTQEAG*
back to top

spliced messenger RNA

>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=834bp|location=Sequence derived from alignment at ScGOVlb_1708:1413728..1414561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTCGTACTCCTGTACCCCTCAGGCATCAGAGCAATGTTGCATGTCT
ACCTCTTCCTGGAAATCTTTCTCGGGCCTCTTTGGTAAAGAAGTTGACCT
CGGCTGGCTTGAACACGAGCGGAAATGCTGCAGAATTGAAGAATCGTTAC
CGAGAGTATGTCCTTCGTGTCAATGCTGCGTCAGATTCAGTTTGCGGTGC
TTCCAAAGAGAAGCTTGCCAATGACGTTAAAAGGCATGAAGCCGCCCTTT
CCAAGCCACAGAAAACCGTCAATGTTTTTATCGAGAAACCCAAGAATGGG
CTCACCGTACAGCAGGGAGATAACCATGATGATCTAGTGCGAAAGATAAA
GCAAAGAAAGCGATTGCACTCCTCTTTAACATCACCAGGCGATGTTAACC
GTGACAAATGTTCCGATGGAGAAGAAAAGGATGAAGTTGACGATTACTCA
TCGTCACAAAAGACAACCAAAGCGATGAAACGATCACGCTCTACTGCAGG
TCAAAGTTGTGGACCACAAGTTAAGGATGGAACTGCCCAAAACAGACAGG
ATTCGCCCAATGCTGATCTCGTAACAGGCGCATTTATCCAGGTCGCTCTA
GGGTCGGCTGCGATGAATATATGTCCGGAAAACCGGTCACCTCGTAAAAC
CCTTGAAAGTGATCAAAGTACTACACAAGAAACGCCACCTTCGACATCCA
ACCCACTTAATTTAACACAAGAACAAAGAGAACGGATTCATCGACACAAA
ATGGCGGCAATGGAAAGGAGACGACAAAACAGTCAGAAGTATGTGAGACG
TTTGCCTTTCACAGATACACAGGAAGCCGGATAG
back to top

protein sequence of Gvermi5950.t1

>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=278bp
MSRTPVPLRHQSNVACLPLPGNLSRASLVKKLTSAGLNTSGNAAELKNRY
REYVLRVNAASDSVCGASKEKLANDVKRHEAALSKPQKTVNVFIEKPKNG
LTVQQGDNHDDLVRKIKQRKRLHSSLTSPGDVNRDKCSDGEEKDEVDDYS
SSQKTTKAMKRSRSTAGQSCGPQVKDGTAQNRQDSPNADLVTGAFIQVAL
GSAAMNICPENRSPRKTLESDQSTTQETPPSTSNPLNLTQEQRERIHRHK
MAAMERRRQNSQKYVRRLPFTDTQEAG*
back to top

mRNA from alignment at ScGOVlb_1708:1413728..1414561-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=834bp|location=Sequence derived from alignment at ScGOVlb_1708:1413728..1414561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGTACTCCTGTACCCCTCAGGCATCAGAGCAATGTTGCATGTCT
ACCTCTTCCTGGAAATCTTTCTCGGGCCTCTTTGGTAAAGAAGTTGACCT
CGGCTGGCTTGAACACGAGCGGAAATGCTGCAGAATTGAAGAATCGTTAC
CGAGAGTATGTCCTTCGTGTCAATGCTGCGTCAGATTCAGTTTGCGGTGC
TTCCAAAGAGAAGCTTGCCAATGACGTTAAAAGGCATGAAGCCGCCCTTT
CCAAGCCACAGAAAACCGTCAATGTTTTTATCGAGAAACCCAAGAATGGG
CTCACCGTACAGCAGGGAGATAACCATGATGATCTAGTGCGAAAGATAAA
GCAAAGAAAGCGATTGCACTCCTCTTTAACATCACCAGGCGATGTTAACC
GTGACAAATGTTCCGATGGAGAAGAAAAGGATGAAGTTGACGATTACTCA
TCGTCACAAAAGACAACCAAAGCGATGAAACGATCACGCTCTACTGCAGG
TCAAAGTTGTGGACCACAAGTTAAGGATGGAACTGCCCAAAACAGACAGG
ATTCGCCCAATGCTGATCTCGTAACAGGCGCATTTATCCAGGTCGCTCTA
GGGTCGGCTGCGATGAATATATGTCCGGAAAACCGGTCACCTCGTAAAAC
CCTTGAAAGTGATCAAAGTACTACACAAGAAACGCCACCTTCGACATCCA
ACCCACTTAATTTAACACAAGAACAAAGAGAACGGATTCATCGACACAAA
ATGGCGGCAATGGAAAGGAGACGACAAAACAGTCAGAAGTATGTGAGACG
TTTGCCTTTCACAGATACACAGGAAGCCGGATAG
back to top

Coding sequence (CDS) from alignment at ScGOVlb_1708:1413728..1414561-

>Gvermi5950.t1 ID=Gvermi5950.t1|Name=Gvermi5950.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=834bp|location=Sequence derived from alignment at ScGOVlb_1708:1413728..1414561- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCTCGTACTCCTGTACCCCTCAGGCATCAGAGCAATGTTGCATGTCT
ACCTCTTCCTGGAAATCTTTCTCGGGCCTCTTTGGTAAAGAAGTTGACCT
CGGCTGGCTTGAACACGAGCGGAAATGCTGCAGAATTGAAGAATCGTTAC
CGAGAGTATGTCCTTCGTGTCAATGCTGCGTCAGATTCAGTTTGCGGTGC
TTCCAAAGAGAAGCTTGCCAATGACGTTAAAAGGCATGAAGCCGCCCTTT
CCAAGCCACAGAAAACCGTCAATGTTTTTATCGAGAAACCCAAGAATGGG
CTCACCGTACAGCAGGGAGATAACCATGATGATCTAGTGCGAAAGATAAA
GCAAAGAAAGCGATTGCACTCCTCTTTAACATCACCAGGCGATGTTAACC
GTGACAAATGTTCCGATGGAGAAGAAAAGGATGAAGTTGACGATTACTCA
TCGTCACAAAAGACAACCAAAGCGATGAAACGATCACGCTCTACTGCAGG
TCAAAGTTGTGGACCACAAGTTAAGGATGGAACTGCCCAAAACAGACAGG
ATTCGCCCAATGCTGATCTCGTAACAGGCGCATTTATCCAGGTCGCTCTA
GGGTCGGCTGCGATGAATATATGTCCGGAAAACCGGTCACCTCGTAAAAC
CCTTGAAAGTGATCAAAGTACTACACAAGAAACGCCACCTTCGACATCCA
ACCCACTTAATTTAACACAAGAACAAAGAGAACGGATTCATCGACACAAA
ATGGCGGCAATGGAAAGGAGACGACAAAACAGTCAGAAGTATGTGAGACG
TTTGCCTTTCACAGATACACAGGAAGCCGGATAG
back to top