Gvermi5919.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5919.t1
Unique NameGvermi5919.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length1476
Homology
BLAST of Gvermi5919.t1 vs. uniprot
Match: A0A2V3IVK3_9FLOR (Med12 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IVK3_9FLOR)

HSP 1 Score: 1805 bits (4675), Expect = 0.000e+0
Identity = 934/1484 (62.94%), Postives = 1140/1484 (76.82%), Query Frame = 0
Query:    1 MDEPVPPWVPEVAPGVRADVYPVDPPPHPLKPFFHLPDELRLDRAAVIHGYSERRRPYEFHSRLPAERPPPLASSQPQHLTPSFTQADLTKLNHGLVALRRARPTKLQRVHAAVPDKPPAARANLRQFPLQKHPLAHNLDDWFNRLANGSHNPLSQLSHAVPLGPAIVRAAGKVIEMMATRSIPAQRAAWYIRIAVLNECVRQIRPDRPPPSPRLFWTKQLCALLKTEIDAIRARKTPMLGSMERVAFWQYVLDLARWQADEGLLDLPKWTAAIAHALRVELLSSQSFSSPGTKITVMAARRFLPEFLSSPESAKLLLDALFRGSNLIVTASRASSASAARDAAARGKSASRKASRR-AVPTVSSSASTAAAPFTKLTPDPCHLEVMHLLQAGLSALQGSAPRSPHRFSPPEFEQLVRKVAEALHISKDRRKDREPKPGYRTKEERMGSPNFAMRHLEMLSTHGDVARVTLILRQAYVDRGGTPEAVRKVCAWALSSMVADRAEAICVATAVLHQLAAEEASTGSATLRATKTATAPKAHRKGIHQVRSVTTSAAMGGLKNGLPAPPLQRDIWHFMKQYANDRMPENTDKGE-----GIAKELHAAIPTESTEDDDSVVRFIAHLCRHDLLSLPSFVRDVSRLAATNHRGASFLVKCLALLPDPVDKSVSDCRRSILRKYGYTSPTKRSCPRGVCEKSVAIACSGDANAMGNQVETLAAQGDTNVILSTIDALCQQDLASITGNVTQVQNKLTTMASFMVSLGEAGTATEWVLGSLSNLTESTSEWNCENMASKRATFAIAFTRLVSHLARYVAACGYLESVLTLVKTVWCSPWMTSEVEIQLMRTLSSFSRYCGSRLIPVSSYWIRMAAKNLKQVANDGKGLSCVPLALACMRGREDPRQTGSATVADVLDLSNKDNLGVPADDDISQLASRKQLYGYETSQLRSRFSSSEGAFSIDDLFASGFTANDVFGSVVIPVLRNSFLGSESSLSSRPLFSQHSATTLCLVCSHRNDVRMQGIRPAILLELVTLLFLGCCYGHTNIAESLEVLFSIKWVWKILAPYASMELARRLRNRVDFYWGRVMIDKKDALDDKKSLSVTLFNMVSLLCRKETGGDEEMVLKAIGISPFGEVEMLLALLAQHRRDCGEEDVFGLNVSNQATKLNCKHLSRSLVLIALRCCPQDIANQ-VAGYFGHQALHGLQMGLNGVLEALTVEASQNSDYQRAICLQLCQIDEVHRGVLEAAIGSLKPEHAGDVEDSLFEQLVSATKLLTDAVSERRAPSGIFRDGRIISDALESRLLCILRAPRLPQQADWWRQRAQQVAELVKAAVGLLTGSGVAVACKLLDLCLRSIRELSVS---DGKGVAVSQILEWPANQELKRKLEAALLPAMQWVEPVERNSIARLIPCSSTYCRASTAPVRVLNGDGTVVDNWMLLEGYGRGPDQASAIPPENMWRQSDTTIDKDNAVGTVHLKRTYSTFASLA 1474
            MDEP+PPWVPE++PGV ADVYPVDP  HP  P+F  P ELRLDRAAVI+GY+ERR PYEF SRLP E PP L+SS PQH TP+ TQ DL+KL +GLVALRRARP KLQRV  + P      +   R FPLQK PL+  LDDWFNRL+ GSH+PLS+LS +VPLGPAIVRAA KVIEMMAT SI  QRAAWYIRIAVLNECV+Q+RPDRPPPSP+LFWTKQLC+LLKTEI+A RARK  MLG MERV FW YVLDLARWQADEGLLD+ KW  AIAHALR EL+S QSFSSPGTKITVMAARRFLPEFLSSP++A++LLDAL  G+  I+ ASRAS  +AAR++A + K+  RK S+R A+P+ ++  +  AA  +  T + CH+E+MHLL  GL A+Q S P     F+   FE+LVRK A+ +  S+DRRK+++PKP YRTKEE+M SPN A+R  EMLS HGDVARV  ILR AY +RGGTP AVRKVC W LS  V DRAEAICVA AV H+LAAE AS+ +++ R  +     K  +KGIH  R+   S+  G L NG  APPLQRDIWHF+KQYAN ++P+ TD+ E      +  E   A   ES ++DDS+VRFIAHLCRH+LLSLP+FVRDVSRL+A ++ G +FLVKCL+LLPDPVDKS SDCRRSILRKYG+ S +K S P GVCEKS+AIA SGDA+ M  QV+ L  +G TNVI+STIDALCQQDL S+ G+V ++  KLTTM SFMVSLGEA TA EWV+ SL  L E++  W    M +KR + +++  RL+S+L+RY+AA GYLE V  + K +WCS W+ S++E +L+RTLSSF+RYCGSR+IP   +W++MAAKNLK    D KGLSC+PLALACMRG+ED R+ GS+T+ +VL+LSN++NLGV ADDD++QL SR  L G + SQLR+ F+ +EG+F +DDLF  GF AND+ GSV+IPVL++S L S S  +    FSQ SA  L L+ S+RNDVR QGIRPAILLE VTLLF GC YGHTN +ESLEVLF+IKWVWKILAPY+S+ELA+RLR R DFY GR+ +DK +       LS +LFNM+S LC +ETGGDEE VLK+IG +PFGEVEMLLALLAQHRR+ G ED FGL VS QAT + CKH +R+LV +ALRCC QD++ Q VAGY  HQA HG+Q  L  VL  LTVEA +N++  R   LQ CQ+D   RG+LE AI SLK EHA DVE +LFEQL  A++LL++A++E RAPS I  DG +ISDALESRLLCILR PR+   A+ WRQRAQ+VAEL+K+ +G++TGS +A AC LLDLCLRS+R+ S S      G+AV+Q+LEWP NQELKR+LEA L+ AM+WVEP ER  +A+LIP    Y    + PV+VL GDG+VVDNW+LLEGYGRG D+ SAI  E+MWRQ D+ +D+++A+GTVHLKRTYSTFASLA
Sbjct:    1 MDEPIPPWVPEISPGVHADVYPVDPVRHPQNPYFQYPAELRLDRAAVINGYAERRLPYEFASRLPTEGPPSLSSSPPQHQTPTLTQTDLSKLKNGLVALRRARPNKLQRVQVSPPSNNNNPQTAPRSFPLQKPPLSQTLDDWFNRLSKGSHHPLSELSRSVPLGPAIVRAARKVIEMMATSSISTQRAAWYIRIAVLNECVKQMRPDRPPPSPKLFWTKQLCSLLKTEIEAFRARKMAMLGRMERVTFWNYVLDLARWQADEGLLDVSKWITAIAHALREELISMQSFSSPGTKITVMAARRFLPEFLSSPDAARVLLDALLTGAGFIIKASRASG-NAARESA-KSKNTPRKISKRTALPSPTAGPAPGAAAVS--TANECHVEIMHLLATGLKAMQVSVPPVTDEFNMATFERLVRKAADTIQASRDRRKEKDPKPDYRTKEEKMMSPNLAIRQFEMLSAHGDVARVVSILRAAYRERGGTPMAVRKVCEWTLSPSVPDRAEAICVACAVFHRLAAESASSATSSSRVVRNGANMKRSKKGIHPTRTPALSSKPGNL-NGTQAPPLQRDIWHFIKQYANLKVPDTTDRDETDRDDAVVNERSRARKPESLDEDDSIVRFIAHLCRHELLSLPAFVRDVSRLSAVHNPGTAFLVKCLSLLPDPVDKSTSDCRRSILRKYGFHSSSKSSYPHGVCEKSLAIAGSGDASLMAAQVDALGGRGATNVIMSTIDALCQQDLTSMNGDVHELHRKLTTMVSFMVSLGEAATAVEWVMDSLDALVENSPVWKSSVMKAKRRSLSVSLARLISNLSRYIAASGYLEKVFMVFKAIWCSAWLDSDLETELLRTLSSFARYCGSRIIPSPPFWMKMAAKNLKHFGEDAKGLSCIPLALACMRGQEDYRKAGSSTLNEVLNLSNRENLGVSADDDVAQLCSRAVLNGIQISQLRACFAGNEGSFVVDDLFRCGFNANDILGSVLIPVLKHSLLESGSLETPVATFSQLSAKALHLIESNRNDVRFQGIRPAILLEFVTLLFCGCYYGHTNSSESLEVLFAIKWVWKILAPYSSIELAKRLRVRADFYCGRLDVDKTE-------LSASLFNMISRLCGQETGGDEETVLKSIGSTPFGEVEMLLALLAQHRRESGGEDDFGLKVSGQATLVMCKHSARTLVAVALRCCAQDVSRQSVAGYVVHQASHGMQESLTYVLRGLTVEAYKNNEVHRERSLQWCQMDAARRGLLETAIASLKAEHAVDVEAALFEQLSGASRLLSEALTEGRAPSSIVEDGELISDALESRLLCILRCPRMSVHAERWRQRAQEVAELLKSGIGIMTGSAIAAACNLLDLCLRSMRDSSTSADEHANGIAVNQVLEWPENQELKRQLEATLVAAMRWVEPAERAIMAKLIPRRMGYGSGLSRPVKVLKGDGSVVDNWILLEGYGRGADEESAIGAEDMWRQGDSIVDRESAIGTVHLKRTYSTFASLA 1472          
BLAST of Gvermi5919.t1 vs. uniprot
Match: A0A7S1TFY4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TFY4_9RHOD)

HSP 1 Score: 170 bits (430), Expect = 8.280e-39
Identity = 201/724 (27.76%), Postives = 305/724 (42.13%), Query Frame = 0
Query:   72 LASSQP-----QHLTPSFTQADLTKLNHGLVALRRARPTKLQRVHAAVPD-KPPAARANLRQFPLQKHPLAHNLDDWFNRLANGSHNPLSQLSHAVPLGPAIVRAAGKVIEMMATRSIPAQRAAWYIRIAVLNECVRQIRPDRPPPSPRLFWTKQLCALLKTEIDAIRARKTPMLGSMERVAFWQYVLDLARWQADEGLLDLPKWTAAIAHALRVELL-----------SSQSFSSP--------GTKITVMAARRFLPEFLSSPESAKLLLDAL--------FRGSNLIVTASRA------SSASAARDAAARGKSAS-RKASRRAVPTVSSSASTAAAPF-TKLTPDPCHLEV-MHLLQAG-----LSALQGSAPRSPHRFSPPEFEQLVRKVAEALHISKDRRKDREPKPGYRTKEERMGSPNF-----AMRHLEMLSTHGDVARVTLILRQAYVDRGGTP-EAVRKVCAWALSSMVADRAEAICVATAVLHQLAAEEASTGSATLRATKTATAPKAHRKGIHQVRSVTTSAAMGGLKNGLPAPPLQRDIWHFMKQYANDRMPENTDKGEGIAKELHAAIPTESTEDDDSVVRFIAHLCRHDLLSLPSFVRDVSRLAATNHRGASFLVKCLALLPDPVDKSVSDCRRSILRKYGYTSPTKRSCPRGVCEKSVAIACSGDANAMGNQVETLAAQGDTNVILSTIDALCQQDLASITGNVTQV 742
            ++SSQP      H     T   L ++   +  LRR +P   QR    + +     + +    FP+Q+  L   LD +F++LA+ ++     L+H VP G  + R+  +++E+MA++ +PAQRA WYIRI ++N+ ++Q RPDRPPP+P+  WTK +  LL  + ++ RAR      + E++AFW+YVLDL RWQADEGLLD+  W   +AH LR E+             S S SS         G K+TV AA RF  E   + E ++ +LD L          G   + + SR       S ASA R+A  +      RKA  R      S A  + AP  T  T  P   +V +H L        LS + GS  R       P           A  +S        P P           PN      A   L+     GD +     L    V   G P  A R VC WAL    +  +    +++  L  L   E  T     R   T   P  HR        + +S  +GG K                               +G++  L A++              I  LC     SL +F  DVSRL++++ +    + + L LLP+P D++ +  R+S++R+        +     V +  +++AC G+  A       L  +      L+T++A+ Q D   I G++  V
Sbjct:   29 ISSSQPASGSASHSLQLITSDRLCRIKESITTLRRTKPPGRQREELGLENLHNNDSGSKWGPFPVQRI-LPEALDSFFDKLASDAYTT-QDLTHMVPAGGPVTRSLPRLLELMASKGVPAQRATWYIRITIMNDAMKQARPDRPPPNPKQNWTKLIHDLL--QFESFRARGPNAQMAAEKLAFWEYVLDLLRWQADEGLLDMNMWINKLAHELRKEIAFARSTLHDASGHSTSASSAADIEVALLGCKVTVGAAERFEHELFQTRELSQPVLDLLSSVLATPLLTGGRRVNSTSRLTMSQPPSPASAVRNAMIQRLGLLLRKAVHRVYSGPDSDAHKSGAPMATNGTGAPSSGQVPLHELSIEELVKKLSNMAGSTRRGAMTGESP--------APTASPMSASSLPTPVPIPAV--------LPNLTTEVAASATLQKFPLVGDTSSAVAEL----VSGLGNPINAARFVCKWALHGPFSTWSMTPVISSTFLKAL---EGLTRRG--RVETTTKVPYLHR--------IISSMILGGAKT------------------------------KGVSPNLAASL--------------IVRLCDVGCFSLATFFGDVSRLSSSDVKVE--VARYLELLPEPADRNEAVQRKSLVRRC-----LDQDSRDNVNDAMMSVACGGNTRAAARDGVKLLREHPFVEWLATVEAIGQLDENDIRGSILSV 664          
BLAST of Gvermi5919.t1 vs. uniprot
Match: A0A7S0BMQ7_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BMQ7_9RHOD)

HSP 1 Score: 124 bits (310), Expect = 4.850e-27
Identity = 82/251 (32.67%), Postives = 129/251 (51.39%), Query Frame = 0
Query:   35 HLPDELRLDRAAVIHGYSERRRPYEFHSRLPAERPPPLASSQPQHLTPSFT--QADLTKLNHGLVALRRARPTKLQRVHAAVPDKPPAARANLRQFPLQKHPLAHNLDDWFNRLANGSHNPLSQLSHAVPLGPAIVRAAGKVIEMMATRSIPAQRAAWYIRIAVLNECVRQIRPDRPPPSPRLFWTKQLCALLKTEIDAIRARKTPMLGSMERVAFWQYVLDLARWQADEGLLDLPKWTAAIAHA-LRVEL 282
            ++ +EL L+   VI G++E R+ +EF S +         S+   H  P+       + ++   +  L + RP  L+ V     DK     +    FPLQK  +    +++  RLA G   P   +S  VPLGPAI R+ GK +EMM  +++P Q AAW++++A+LNE  ++ RPD+P PS +  W K      + ++++ RA       S  +   W+Y L + R+QADEGLLD       +  A LR EL
Sbjct:   41 NISEELVLNDTTVISGHAEWRKAWEFDSCI-KNCSLVNTSNSGGHSNPTVNVGSGGVARIASAVSELSKRRPRCLRFVLKERDDK---TFSEQLAFPLQKPSVNIAFEEFLLRLARG---PCKAVSKDVPLGPAISRSVGKTLEMMMEKNVPPQAAAWFLKVAILNELPKKTRPDKPLPSAKWLWFKLASEHFRAQLESYRALNVSPQTSAFKSNQWEYFLSILRFQADEGLLDESTLVGRLLFAELRKEL 284          
The following BLAST results are available for this feature:
BLAST of Gvermi5919.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3IVK3_9FLOR0.000e+062.94Med12 domain-containing protein n=1 Tax=Gracilario... [more]
A0A7S1TFY4_9RHOD8.280e-3927.76Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0BMQ7_9RHOD4.850e-2732.67Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019035Mediator complex, subunit Med12SMARTSM01281Med12_2coord: 127..193
e-value: 0.0022
score: 21.9
IPR019035Mediator complex, subunit Med12PFAMPF09497Med12coord: 133..193
e-value: 7.5E-8
score: 32.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 59..85

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:804088..808515 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5919.t1Gvermi5919.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 804088..808515 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5919.t1 ID=Gvermi5919.t1|Name=Gvermi5919.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=1476bp
MDEPVPPWVPEVAPGVRADVYPVDPPPHPLKPFFHLPDELRLDRAAVIHG
YSERRRPYEFHSRLPAERPPPLASSQPQHLTPSFTQADLTKLNHGLVALR
RARPTKLQRVHAAVPDKPPAARANLRQFPLQKHPLAHNLDDWFNRLANGS
HNPLSQLSHAVPLGPAIVRAAGKVIEMMATRSIPAQRAAWYIRIAVLNEC
VRQIRPDRPPPSPRLFWTKQLCALLKTEIDAIRARKTPMLGSMERVAFWQ
YVLDLARWQADEGLLDLPKWTAAIAHALRVELLSSQSFSSPGTKITVMAA
RRFLPEFLSSPESAKLLLDALFRGSNLIVTASRASSASAARDAAARGKSA
SRKASRRAVPTVSSSASTAAAPFTKLTPDPCHLEVMHLLQAGLSALQGSA
PRSPHRFSPPEFEQLVRKVAEALHISKDRRKDREPKPGYRTKEERMGSPN
FAMRHLEMLSTHGDVARVTLILRQAYVDRGGTPEAVRKVCAWALSSMVAD
RAEAICVATAVLHQLAAEEASTGSATLRATKTATAPKAHRKGIHQVRSVT
TSAAMGGLKNGLPAPPLQRDIWHFMKQYANDRMPENTDKGEGIAKELHAA
IPTESTEDDDSVVRFIAHLCRHDLLSLPSFVRDVSRLAATNHRGASFLVK
CLALLPDPVDKSVSDCRRSILRKYGYTSPTKRSCPRGVCEKSVAIACSGD
ANAMGNQVETLAAQGDTNVILSTIDALCQQDLASITGNVTQVQNKLTTMA
SFMVSLGEAGTATEWVLGSLSNLTESTSEWNCENMASKRATFAIAFTRLV
SHLARYVAACGYLESVLTLVKTVWCSPWMTSEVEIQLMRTLSSFSRYCGS
RLIPVSSYWIRMAAKNLKQVANDGKGLSCVPLALACMRGREDPRQTGSAT
VADVLDLSNKDNLGVPADDDISQLASRKQLYGYETSQLRSRFSSSEGAFS
IDDLFASGFTANDVFGSVVIPVLRNSFLGSESSLSSRPLFSQHSATTLCL
VCSHRNDVRMQGIRPAILLELVTLLFLGCCYGHTNIAESLEVLFSIKWVW
KILAPYASMELARRLRNRVDFYWGRVMIDKKDALDDKKSLSVTLFNMVSL
LCRKETGGDEEMVLKAIGISPFGEVEMLLALLAQHRRDCGEEDVFGLNVS
NQATKLNCKHLSRSLVLIALRCCPQDIANQVAGYFGHQALHGLQMGLNGV
LEALTVEASQNSDYQRAICLQLCQIDEVHRGVLEAAIGSLKPEHAGDVED
SLFEQLVSATKLLTDAVSERRAPSGIFRDGRIISDALESRLLCILRAPRL
PQQADWWRQRAQQVAELVKAAVGLLTGSGVAVACKLLDLCLRSIRELSVS
DGKGVAVSQILEWPANQELKRKLEAALLPAMQWVEPVERNSIARLIPCSS
TYCRASTAPVRVLNGDGTVVDNWMLLEGYGRGPDQASAIPPENMWRQSDT
TIDKDNAVGTVHLKRTYSTFASLAA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019035Mediator_Med12