Gvermi5875.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5875.t1
Unique NameGvermi5875.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length170
Homology
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A2V3IRQ1_9FLOR (AP complex subunit sigma n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IRQ1_9FLOR)

HSP 1 Score: 273 bits (698), Expect = 7.850e-92
Identity = 137/169 (81.07%), Postives = 152/169 (89.94%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPEFAPKTPAASMHHAAISNAPRRR 169
            MIHWI+LINRQGKVRLSKWY+SFTETER+ ILRDVQ+ VLTRSSKMCNVVDRK +K+VYKRYASLYFIACIDAD+NEL MMELLHVFVEVLD YFGNVCELDLIFHFTRA+WILDEMFS GELLE DK+A+L AVY KDA AEP PEFAPKTP+ + H A+ S++ R R
Sbjct:    1 MIHWILLINRQGKVRLSKWYESFTETERSAILRDVQSHVLTRSSKMCNVVDRKDNKIVYKRYASLYFIACIDADENELAMMELLHVFVEVLDSYFGNVCELDLIFHFTRAYWILDEMFSGGELLECDKSAVLAAVYSKDAAAEPVPEFAPKTPSGA-HVASASHSSRHR 168          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A7S2ZN60_9RHOD (AP complex subunit sigma n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZN60_9RHOD)

HSP 1 Score: 188 bits (478), Expect = 1.630e-58
Identity = 88/152 (57.89%), Postives = 119/152 (78.29%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPEFAPKT 152
            M+H+ +L+NRQG VRL+KW+  F++ +R  ILR++ N V+TR +KMCN V+ K  K+VYKRYASLY +  ID DDNEL+ +++LH++VE LD+YFGNVCELD+IF+F RA++ILDE+   GEL +S+K A L A Y  DALAE  PEFAPK+
Sbjct:    1 MMHYFLLVNRQGVVRLAKWFQPFSQKDRNKILREITNFVITRQNKMCNFVEWKDVKLVYKRYASLYAVVAIDPDDNELITLDMLHLYVETLDRYFGNVCELDIIFNFHRAYYILDEILLGGELQDSNKRAALHAAYEGDALAEKVPEFAPKS 152          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A5J4Z8F6_PORPP (AP complex subunit sigma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z8F6_PORPP)

HSP 1 Score: 182 bits (462), Expect = 5.690e-56
Identity = 83/144 (57.64%), Postives = 118/144 (81.94%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEP 144
            MIH+I+LINRQGK+RLSKWY+ +++ +RA  +RD+ +TVL R+SKMCNVV+  +HK+VYKRYASL+F+A +  DDNEL+ +E+LH++VE LD+YFG+VCELDLIF+   AH++LDE+  AG+LLE ++  + +AV   D LA+P
Sbjct:    1 MIHFIILINRQGKLRLSKWYEPYSQKQRAQFVRDISHTVLPRTSKMCNVVELDEHKLVYKRYASLFFVASVSRDDNELLAIEMLHMYVEALDQYFGSVCELDLIFNMDIAHYVLDEVIVAGQLLEPNRRLVKEAVRAADILADP 144          
BLAST of Gvermi5875.t1 vs. uniprot
Match: L8HM08_ACACA (AP complex subunit sigma n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HM08_ACACA)

HSP 1 Score: 181 bits (459), Expect = 1.110e-55
Identity = 80/143 (55.94%), Postives = 115/143 (80.42%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAE 143
            MIH+++L+NRQGK RL+KW+ ++T  +RA   R+V   VL R+++ CN+++ K+HK++YKRYASLYF+AC+D +DNELV +E +H FVE+LDKYFGNVCELDLIF+F +A+++LDE+ + GEL ES K A+L  V ++D L E
Sbjct:    1 MIHFVLLLNRQGKTRLAKWFSTYTAKQRARFSREVSTLVLNRNARYCNIIEWKEHKLIYKRYASLYFVACVDWNDNELVTLETIHHFVEILDKYFGNVCELDLIFNFHKAYFVLDELIATGELQESSKNAVLRCVAQQDVLQE 143          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A059LQB8_9CHLO (AP complex subunit sigma n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LQB8_9CHLO)

HSP 1 Score: 180 bits (456), Expect = 4.500e-55
Identity = 86/142 (60.56%), Postives = 113/142 (79.58%), Query Frame = 0
Query:    2 IHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAE 143
            I WI+L++RQGKVRL+KWY + ++ +RA IL+DV   VL+R+ KMCNV++ K HK+VYKRYASLYFI  ID +DNEL+ +E++H FVEVLDKYFGNVCELDLIF+F +A+++LDE+   GEL E  K A+L  V  +DAL E
Sbjct:    3 IRWIVLLSRQGKVRLAKWYTTISQKDRAKILKDVAPLVLSRAPKMCNVIEWKDHKVVYKRYASLYFICGIDNEDNELLTLEVIHQFVEVLDKYFGNVCELDLIFNFHKAYYVLDELILGGELQEPSKRAVLSRVEAQDALVE 144          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A1D2AGA2_AUXPR (AP complex subunit sigma n=1 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2AGA2_AUXPR)

HSP 1 Score: 178 bits (452), Expect = 1.710e-54
Identity = 83/143 (58.04%), Postives = 113/143 (79.02%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAE 143
            MI W++L++RQGKVRL+KWY + T+ ERA +L++V   VL+R++K+CN +D K  K+VYKRYASLYF+  +DAD+NEL+ +E++H FVEVLDKYFGNVCELDLIF+F +A++ILDE+  AGEL E  K  +L  V  +D L E
Sbjct:    1 MIRWVLLLSRQGKVRLAKWYTTTTQKERAKLLKEVSPLVLSRAAKLCNFIDWKDQKIVYKRYASLYFVMGVDADENELITLEIIHEFVEVLDKYFGNVCELDLIFNFHKAYFILDELLLAGELQEPSKRVVLQKVEAQDQLVE 143          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A1U8BA35_NELNU (AP complex subunit sigma n=13 Tax=Mesangiospermae TaxID=1437183 RepID=A0A1U8BA35_NELNU)

HSP 1 Score: 177 bits (450), Expect = 3.440e-54
Identity = 82/149 (55.03%), Postives = 115/149 (77.18%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPEFA 149
            MIH+++LI+RQGKVRL+KWY  +++ ER  ++R++   +LTR  K+CN V+ + HK+VYKRYASLYF  CID DDNEL ++E++H FVE+LD+YFG+VCELDLIF+F +A++ILDE+  AGEL ES K  +   +  +D+L E A E A
Sbjct:    1 MIHFVLLISRQGKVRLTKWYSPYSQKERTKVIRELSGVILTRGPKLCNFVEWRGHKVVYKRYASLYFCMCIDQDDNELEILEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKTVARLIAAQDSLVETAKEQA 149          
BLAST of Gvermi5875.t1 vs. uniprot
Match: D2UXP0_NAEGR (AP complex subunit sigma n=2 Tax=Naegleria TaxID=5761 RepID=D2UXP0_NAEGR)

HSP 1 Score: 177 bits (448), Expect = 5.200e-54
Identity = 82/143 (57.34%), Postives = 115/143 (80.42%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAE 143
            MIH+++LI+RQ KVRL+KWY ++++ ERA I+++V + V+ R SK+ N +D K+HK+V+KRYASLYF+ACID DDNEL+ ME++H FVEVLDKYFGNVCELDLI +F +A++ILDE+F  GEL E+ +  IL  +  +D + E
Sbjct:    1 MIHFVLLISRQSKVRLAKWYSTYSQNERARIVKEVAHMVVGRPSKLSNFLDFKEHKLVFKRYASLYFVACIDKDDNELIAMEMIHHFVEVLDKYFGNVCELDLILNFHKAYFILDEVFVNGELQETSRKTILKVITTQDQMME 143          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A7S2JKH6_9EUKA (AP complex subunit sigma n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JKH6_9EUKA)

HSP 1 Score: 176 bits (447), Expect = 7.150e-54
Identity = 84/147 (57.14%), Postives = 112/147 (76.19%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPE 147
            MI +++L+NRQGKVRLSKWY  F + E+  I+R+V + VL R+ K+CN +D +  K+VYKRYASLYFI C+DA DNEL+ +E++H FVEVLD+YFGNVCELDLIF+F +A +ILDE+  AGEL E+ K  +L     +DAL E + E
Sbjct:    1 MIQFLLLLNRQGKVRLSKWYVPFNQKEKQKIIREVSSAVLARTPKLCNFLDWRDSKVVYKRYASLYFITCVDASDNELITLEIIHHFVEVLDRYFGNVCELDLIFNFHKAFYILDELIIAGELQETSKKTVLRVCAAQDALVESSAE 147          
BLAST of Gvermi5875.t1 vs. uniprot
Match: A0A804KI82_MUSAM (AP complex subunit sigma n=4 Tax=Zingiberales TaxID=4618 RepID=A0A804KI82_MUSAM)

HSP 1 Score: 176 bits (447), Expect = 9.520e-54
Identity = 82/149 (55.03%), Postives = 117/149 (78.52%), Query Frame = 0
Query:    1 MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVVDRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCELDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPEFA 149
            MIH+++LI+RQGKVRL+KWY  + + ER+T++R++   +L+R  K+CN V+ K +K+VY+RYASLYF  CID DDNEL ++E++H FVE+LD+YFG+VCELDLIF+F +A++ILDE+  AGEL ES K A+   +  +D+L E A E A
Sbjct:    1 MIHFVILISRQGKVRLTKWYSPYQQKERSTVIRELSGLILSRGPKLCNFVEWKGYKVVYRRYASLYFCMCIDPDDNELEILEIIHHFVEILDRYFGSVCELDLIFNFHKAYYILDEILIAGELQESSKKAVARLIAAQDSLVETAKEEA 149          
The following BLAST results are available for this feature:
BLAST of Gvermi5875.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IRQ1_9FLOR7.850e-9281.07AP complex subunit sigma n=1 Tax=Gracilariopsis ch... [more]
A0A7S2ZN60_9RHOD1.630e-5857.89AP complex subunit sigma n=2 Tax=Rhodosorus marinu... [more]
A0A5J4Z8F6_PORPP5.690e-5657.64AP complex subunit sigma n=1 Tax=Porphyridium purp... [more]
L8HM08_ACACA1.110e-5555.94AP complex subunit sigma n=1 Tax=Acanthamoeba cast... [more]
A0A059LQB8_9CHLO4.500e-5560.56AP complex subunit sigma n=1 Tax=Helicosporidium s... [more]
A0A1D2AGA2_AUXPR1.710e-5458.04AP complex subunit sigma n=1 Tax=Auxenochlorella p... [more]
A0A1U8BA35_NELNU3.440e-5455.03AP complex subunit sigma n=13 Tax=Mesangiospermae ... [more]
D2UXP0_NAEGR5.200e-5457.34AP complex subunit sigma n=2 Tax=Naegleria TaxID=5... [more]
A0A7S2JKH6_9EUKA7.150e-5457.14AP complex subunit sigma n=1 Tax=Cyanoptyche gloeo... [more]
A0A804KI82_MUSAM9.520e-5455.03AP complex subunit sigma n=4 Tax=Zingiberales TaxI... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR016635Adaptor protein complex, sigma subunitPIRSFPIRSF015588AP_complex_sigmacoord: 1..149
e-value: 1.8E-60
score: 200.8
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753ADAPTOR COMPLEXES SMALL SUBUNIT FAMILYcoord: 1..152
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 1..140
e-value: 2.6E-51
score: 173.3
NoneNo IPR availableGENE3D3.30.450.60coord: 1..149
e-value: 7.2E-60
score: 203.3
NoneNo IPR availablePANTHERPTHR11753:SF49AP-1 COMPLEX SUBUNIT SIGMA-2coord: 1..152
IPR000804Clathrin adaptor complex, small chainPROSITEPS00989CLAT_ADAPTOR_Scoord: 57..67
IPR044733AP-1 complex subunit sigmaCDDcd14831AP1_sigmacoord: 3..143
e-value: 2.18623E-79
score: 230.137
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 1..139

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:507016..507627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5875.t1Gvermi5875.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 507016..507627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5875.t1 ID=Gvermi5875.t1|Name=Gvermi5875.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=170bp
MIHWIMLINRQGKVRLSKWYDSFTETERATILRDVQNTVLTRSSKMCNVV
DRKQHKMVYKRYASLYFIACIDADDNELVMMELLHVFVEVLDKYFGNVCE
LDLIFHFTRAHWILDEMFSAGELLESDKAAILDAVYRKDALAEPAPEFAP
KTPAASMHHAAISNAPRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016635AP_complex_ssu
IPR022775AP_mu_sigma_su
IPR000804Clathrin_sm-chain_CS
IPR044733AP1_sigma
IPR011012Longin-like_dom_sf