Gvermi5850.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5850.t2
Unique NameGvermi5850.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length181
Homology
BLAST of Gvermi5850.t2 vs. uniprot
Match: A0A2V3IFB2_9FLOR (Protein LSM12-like n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFB2_9FLOR)

HSP 1 Score: 263 bits (671), Expect = 2.370e-87
Identity = 125/180 (69.44%), Postives = 146/180 (81.11%), Query Frame = 0
Query:    1 MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISGHAAAVERVQMVLTREAHRITSVADANGVKP 180
            MDARPQPGM FEVGKPIA+ L+DGS LRGFVHAED+GA LLCLELIPSA++ALV +VN+KS +P    A++RKWPSNF +DL KLR +ERR  EK E EF++LGVGVSP AQA+FD LAKTM C WDG+DILILD+VRLAPPY  K +SG    VERV+M+L  EAH I +  DANGVKP
Sbjct:    1 MDARPQPGMKFEVGKPIAIQLNDGSFLRGFVHAEDKGAALLCLELIPSAKVALVSIVNIKSASPLTQIADTRKWPSNFHIDLAKLRAEERRICEKREAEFNKLGVGVSPSAQAIFDTLAKTMPCKWDGEDILILDTVRLAPPYNAKCLSGDTGVVERVKMILENEAHSIRNATDANGVKP 180          
BLAST of Gvermi5850.t2 vs. uniprot
Match: R7QH47_CHOCR (LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QH47_CHOCR)

HSP 1 Score: 183 bits (465), Expect = 3.010e-56
Identity = 88/170 (51.76%), Postives = 117/170 (68.82%), Query Frame = 0
Query:    9 MSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISGHAAAVERVQMVLTREAHRITSVADANGV 178
            M+FEVGKP++V L DG+ L+GFVHAED  AGL+CLELIPSA + L+P+ NVKS  P P  A+SRKWP+N  +DL +L+ ++ R + K   EF+ +GVGV+P  QAVFDVLAKT+ C W+G  I++  +VRL PPY +K+I        RV+MVL R         + NGV
Sbjct:    1 MAFEVGKPLSVQLVDGTALKGFVHAEDAAAGLVCLELIPSADLTLLPISNVKSATPIPDLADSRKWPANLDVDLPRLKAEQERIFRKRHIEFTHIGVGVTPEGQAVFDVLAKTLPCEWEGNVIVVFGTVRLGPPYDIKSI--------RVRMVLERRTRTPRPAEETNGV 162          
BLAST of Gvermi5850.t2 vs. uniprot
Match: A0A2P6U0H0_CHLSO (LSM12-like protein n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6U0H0_CHLSO)

HSP 1 Score: 81.6 bits (200), Expect = 2.940e-16
Identity = 45/117 (38.46%), Postives = 67/117 (57.26%), Query Frame = 0
Query:   56 LVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPY-TVKAISGHAAAVERVQMVLTREAHRITS 171
            + N+  + P   PAE         +DLQ+ R  E +     E E +++GVGV+  AQ +FD LAKT+ C WDG+ I++LD + ++PPY T  ++ G  AA  RV+ VL  E  R+ S
Sbjct:   58 VTNILQLKPAAGPAEPLP-----AVDLQRCREREDKAVRAAEAEAAKIGVGVTRQAQVIFDALAKTLPCRWDGERIVVLDEIVVSPPYETCTSLHGDDAAAARVKKVLEAERQRLQS 169          
BLAST of Gvermi5850.t2 vs. uniprot
Match: A0A2R6P3K0_ACTCC (AD domain-containing protein n=4 Tax=Actinidia TaxID=3624 RepID=A0A2R6P3K0_ACTCC)

HSP 1 Score: 80.1 bits (196), Expect = 1.460e-15
Identity = 57/178 (32.02%), Postives = 90/178 (50.56%), Query Frame = 0
Query:    1 MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLE------LIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISGHA-AAVERVQMVLTREAHRITS 171
            MDA    G  F VG  +++  + G    G +   DR + +L L+        P   I L+    +K  + +   AE         LDL  L+  E     + E E  +LGVGV+P+AQ++FD L+KT+   WD   I++++ VR++ PY  ++++G   AA ERV+ VL  E  R+ S
Sbjct:    1 MDANSFGGEEFAVGCILSIKTTLGDEFDGQIITFDRPSNILVLQEGIKSVSGPRRNIRLLKANYIKEFS-YLGQAEDPLNSKKCYLDLSALQAREESAIRQAEIEAERLGVGVTPVAQSIFDALSKTLPVRWDKTAIVVMNEVRVSSPYLPESVAGGTPAANERVRKVLELERKRLQS 177          
BLAST of Gvermi5850.t2 vs. uniprot
Match: A0A2V0NSF4_9CHLO (AD domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSF4_9CHLO)

HSP 1 Score: 79.3 bits (194), Expect = 3.120e-15
Identity = 52/178 (29.21%), Postives = 93/178 (52.25%), Query Frame = 0
Query:    8 GMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPS----------AQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAIS------GHAAAVERVQMVLTREAHRI 169
            G  + +G  + +  +    + G V A D     L L+   +          A+ A+  LV+ +   P  HP E   +  N  +D ++ RL E +  ++ E + +++GVGV+  AQ++FD L+KT+ C W G+DI++++SV + PPY  ++ +      G   A+ER++ VLT E  R+
Sbjct:   13 GSQWAIGCKVTIRTTFDEEVTGTVFAYDAATDSLVLQQAGTHGGVNNLRLYAKAAIKELVSAE---PPSHPPEL--FLPN--VDRERARLREEKALKQAEADLAKVGVGVTREAQSIFDALSKTLPCAWRGRDIIVMESVVVPPPYNPESCAARGGGAGEGGALERIRRVLTAERSRL 183          
BLAST of Gvermi5850.t2 vs. uniprot
Match: A0A7R9WKN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WKN5_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.520e-14
Identity = 46/130 (35.38%), Postives = 66/130 (50.77%), Query Frame = 0
Query:   23 DGSLLRGFVHAEDRGAGLLCLELIPSAQIALVPLVNVKSVAP--FPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISG 150
            D S    FV A +       + +I ++ I  + +V   +  P   PH ++ R         +     D R   EK     SQ+GV V+P AQ+VFD L KT  C WDGK I++LD+ R+APPYT ++ SG
Sbjct:   44 DASSTAVFVQAIEHTTIKSTIRMIKNSSIKEIKIVGPPTAPPAALPHISKDR---------VHGREADRRGVAEKRA---SQIGVDVTPEAQSVFDALVKTYPCHWDGKTIVVLDTTRVAPPYTAESCSG 161          
BLAST of Gvermi5850.t2 vs. uniprot
Match: C1MT91_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MT91_MICPC)

HSP 1 Score: 74.3 bits (181), Expect = 1.950e-13
Identity = 49/171 (28.65%), Postives = 84/171 (49.12%), Query Frame = 0
Query:   13 VGKPIAVHLSDGSLLRGFVHAEDRGAGLLCL----ELIPSAQIALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRL-DERRTYEKHEHEF-------SQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYT--VKAISGHAAAVERVQMVLTREAHRI 169
            +G  ++   + G    G V   D G GL  L    +++ +  + ++    V  +         +  P + P  ++KL + DE R  ++ E          + +GV V+  AQ +FD LA+T+ C W+G+ I++LD V+++PPY   V   +G   AVERVQ VL  E  ++
Sbjct:    8 IGHVVSGVTATGEKFAGEVFTFDEGTGLAVLRAKGDIVNTHDVRILRAEGVSDL---------KSTPPSDPPKMEKLPVVDEARCQKREEAAVKAATISAANIGVDVTAEAQDIFDALARTLPCRWEGRSIVVLDEVKISPPYAECVGVATGDPRAVERVQKVLAMEKSKL 169          
BLAST of Gvermi5850.t2 vs. uniprot
Match: E1ZJ68_CHLVA (AD domain-containing protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZJ68_CHLVA)

HSP 1 Score: 73.6 bits (179), Expect = 3.750e-13
Identity = 39/91 (42.86%), Postives = 54/91 (59.34%), Query Frame = 0
Query:   80 LDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPY-TVKAISGHAAAVERVQMVLTREAHRI 169
            +DL + R  E +     E E +++GV VS  AQA+FD LAKT+ C WDG  I++LD + +APPY T  ++    A V RV  VL  E  R+
Sbjct:   80 VDLGRCREREDKAVRAAESEAAKIGVNVSRQAQAIFDALAKTLPCRWDGDRIVVLDEIVVAPPYETCTSLHNDDAGVMRVSKVLDAERLRL 170          
BLAST of Gvermi5850.t2 vs. uniprot
Match: S8A436_DACHA (AD domain-containing protein n=1 Tax=Dactylellina haptotyla (strain CBS 200.50) TaxID=1284197 RepID=S8A436_DACHA)

HSP 1 Score: 73.6 bits (179), Expect = 1.210e-12
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 0
Query:   79 PLDLQKLRLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAIS---GHAAAVERVQMVLTREAHRITSVADANGVKP 180
            P++LQ +R  E+   +    +    GVGVS   QA++  L+KTM C W GK I++LD+V +  PYTV+  S   G+  A+ RV+ VL  E  R+  V  +N   P
Sbjct:  127 PINLQAMRNREQAALKLEYEKMLGHGVGVSEEGQAIYTALSKTMPCRWQGKHIIVLDTVIIQEPYTVEKCSSPQGNENALARVKKVLEGERKRLNPVQRSNASTP 231          
BLAST of Gvermi5850.t2 vs. uniprot
Match: D2VQR9_NAEGR (AD domain-containing protein n=1 Tax=Naegleria gruberi TaxID=5762 RepID=D2VQR9_NAEGR)

HSP 1 Score: 72.0 bits (175), Expect = 8.020e-12
Identity = 36/86 (41.86%), Postives = 53/86 (61.63%), Query Frame = 0
Query:   86 RLDERRTYEKHEHEFSQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISGHAAAVERVQMVLTREAHRITS 171
            R +E   YE+ E    +LG  VS  AQA+FD ++KT+ C+W GK IL++DS+ ++PPY V  +SG     +RVQ +L     +I S
Sbjct:  207 RREENAIYERRE----RLGSNVSSEAQAIFDTMSKTVPCSWKGKQILVMDSISISPPYGVDNVSGSGNERKRVQNLLQIAYEKIKS 288          
The following BLAST results are available for this feature:
BLAST of Gvermi5850.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IFB2_9FLOR2.370e-8769.44Protein LSM12-like n=1 Tax=Gracilariopsis chorda T... [more]
R7QH47_CHOCR3.010e-5651.76LSM12 homolog n=1 Tax=Chondrus crispus TaxID=2769 ... [more]
A0A2P6U0H0_CHLSO2.940e-1638.46LSM12-like protein n=1 Tax=Chlorella sorokiniana T... [more]
A0A2R6P3K0_ACTCC1.460e-1532.02AD domain-containing protein n=4 Tax=Actinidia Tax... [more]
A0A2V0NSF4_9CHLO3.120e-1529.21AD domain-containing protein n=1 Tax=Raphidocelis ... [more]
A0A7R9WKN5_9STRA7.520e-1435.38Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
C1MT91_MICPC1.950e-1328.65Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
E1ZJ68_CHLVA3.750e-1342.86AD domain-containing protein n=1 Tax=Chlorella var... [more]
S8A436_DACHA1.210e-1238.10AD domain-containing protein n=1 Tax=Dactylellina ... [more]
D2VQR9_NAEGR8.020e-1241.86AD domain-containing protein n=1 Tax=Naegleria gru... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019181Anticodon-binding domainSMARTSM00995AD_2coord: 76..161
e-value: 1.9E-22
score: 90.6
IPR019181Anticodon-binding domainPFAMPF09793ADcoord: 79..160
e-value: 6.0E-20
score: 71.1
IPR039683Protein Lsm12-likePANTHERPTHR13542LSM12 HOMOLOGcoord: 6..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1708contigScGOVlb_1708:360259..361370 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5850.t2Gvermi5850.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1708 360259..361370 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5850.t2 ID=Gvermi5850.t2|Name=Gvermi5850.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=181bp
MDARPQPGMSFEVGKPIAVHLSDGSLLRGFVHAEDRGAGLLCLELIPSAQ
IALVPLVNVKSVAPFPHPAESRKWPSNFPLDLQKLRLDERRTYEKHEHEF
SQLGVGVSPLAQAVFDVLAKTMQCTWDGKDILILDSVRLAPPYTVKAISG
HAAAVERVQMVLTREAHRITSVADANGVKP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019181Anticodon-binding_dom
IPR039683Lsm12-like