Gvermi5764.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5764.t1
Unique NameGvermi5764.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length370
Homology
BLAST of Gvermi5764.t1 vs. uniprot
Match: A0A2V3IFR3_9FLOR (DUF659 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFR3_9FLOR)

HSP 1 Score: 194 bits (494), Expect = 4.190e-52
Identity = 126/385 (32.73%), Postives = 194/385 (50.39%), Query Frame = 0
Query:    1 MKDFGKLPWVGLILFAISRLVSALRSRPELYCKFKELKEAHNMQLRTSGYVPSDLETDGLYRHLLPETAVLPLKMATTRFCSYKGMLLSYIRSRTVFQNLVNCEDFVTSLLVGRNAKEKDLRESFKRVVKSDFQYRNCFDIHHVLRIFRQYL----------SE-----------------TQFYRSSKPELV------EMEGVYAN--------------------EDITEYGFYTLRHTRQFVASDAFPSLERSQPNRGMEEAVKKIFEGTTFTRLSWQAQSQDEHMKELLSMYECIPVAYCIQKRNRPLLRQFALRSLCASPSSSSLERSFGIQGRIKTAVWDWLSTEKVQKIVFCAFNNNVSSRSHHSLPRRGRSGFTTIQ 332
            M+D G + WV  +L  +S ++  LR++P+LY +FK+LK A N+Q        S L TD   R  LP+TA+LP +M  TRF S + M  S++RS+ V   LV+C DF   L   RN +++DL   FK+ V++D  Y+   DI+H+LR+ RQYL          SE                 T FY + +   V       + G                        E +  Y  + +RH   FV  D FP  ++   + G + AV+++ +     RLSW++Q  D  ++  L MY    V Y  +    P LR+FALR LC+SPSSSS++RSF +Q RI+T++ + L T+KV ++VFCA N  +      ++ +  R  +  ++
Sbjct:  358 MQDIGDISWVKEVLSTVSTVIGDLRNQPKLYSRFKDLKTAFNLQCSAQ----SSLGTDCYGRVQLPKTAILPCQMVATRFASSESMAASFLRSKEVLLRLVDCPDFNARLYDSRNREKRDL---FKQNVRNDSLYQKLLDIYHILRLIRQYLRLFDDESSLLSEVYPATMQLFTKIKSLPLTSFYTAERRADVIRVFEERLNGANRKVALLTPLHRVSYLLDIRSMMEKLNAYRPHVIRHILSFVRLDLFPVSKKLFSDGGEDAAVQRLCDEFLEVRLSWRSQLSDPVLRHSLMMYSRSSVYYWTEYTESPRLREFALRILCSSPSSSSVQRSFSLQSRIRTSMRNRLHTDKVSQLVFCACNETLFLSRSRTVQKLSRDSYAELR 735          
BLAST of Gvermi5764.t1 vs. uniprot
Match: A0A2V3IWF5_9FLOR (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWF5_9FLOR)

HSP 1 Score: 101 bits (252), Expect = 1.260e-21
Identity = 72/199 (36.18%), Postives = 109/199 (54.77%), Query Frame = 0
Query:  189 RQFVASDAFPSLERSQPNRGMEEAVKKIFEGTTFTRLSWQAQSQDEHMKELLSMYECIPVAYCIQKRNR-PLLRQFALRSLCASPSSSSLERSFGIQGRIKTAVWDWLSTEKVQKIVFCAFNN-----------NVSSRSHHSLPRRG--RSGFTTIQGVLPLATDANTQAVSPNYEAICI----ADVTIHDGDEIEID 369
            R FV SD FP  E++Q   G + AV+ + +  +  RLSW++   D+  + LL  Y  I + Y I+  ++  LLR+FALR L  SPSSSS+ERSF  +GRI+T+V + L+ +KV ++VFC+FN+            V  R + ++   G  RS  TT+     L T +N    S  +E        AD  I + +E+E+D
Sbjct:    3 RDFVRSDLFPIAEKAQDRGGEDRAVQLLLQELSLLRLSWRSCGTDDTRRNLLWCYSDISLVYWIEYDDKLSLLREFALRILGTSPSSSSVERSFSHRGRIRTSVRNRLNQQKVMRMVFCSFNDLLFSERSLRIEQVIKREYQNIRFGGWNRSMNTTLAS--SLTTTSNVTGESNLFEEFFGYEDGADGDIEEIEEVEVD 199          
The following BLAST results are available for this feature:
BLAST of Gvermi5764.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3IFR3_9FLOR4.190e-5232.73DUF659 domain-containing protein n=1 Tax=Gracilari... [more]
A0A2V3IWF5_9FLOR1.260e-2136.18Dimer_Tnp_hAT domain-containing protein n=1 Tax=Gr... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..369
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 2..311

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1533579..1534847 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1Gvermi5764.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 1533579..1534847 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=370bp
MKDFGKLPWVGLILFAISRLVSALRSRPELYCKFKELKEAHNMQLRTSGY
VPSDLETDGLYRHLLPETAVLPLKMATTRFCSYKGMLLSYIRSRTVFQNL
VNCEDFVTSLLVGRNAKEKDLRESFKRVVKSDFQYRNCFDIHHVLRIFRQ
YLSETQFYRSSKPELVEMEGVYANEDITEYGFYTLRHTRQFVASDAFPSL
ERSQPNRGMEEAVKKIFEGTTFTRLSWQAQSQDEHMKELLSMYECIPVAY
CIQKRNRPLLRQFALRSLCASPSSSSLERSFGIQGRIKTAVWDWLSTEKV
QKIVFCAFNNNVSSRSHHSLPRRGRSGFTTIQGVLPLATDANTQAVSPNY
EAICIADVTIHDGDEIEID*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf