Gvermi5764.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5764.t1
Unique NameGvermi5764.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length370
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:1533579..1534847 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5764Gvermi5764Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 1533579..1534847 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1Gvermi5764.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 1533579..1534847 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1.start1Gvermi5764.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 1533579..1533581 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1.CDS1Gvermi5764.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1533579..1534036 +
Gvermi5764.t1.CDS2Gvermi5764.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1534146..1534202 +
Gvermi5764.t1.CDS3Gvermi5764.t1.CDS3Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 1534253..1534847 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1.exon1Gvermi5764.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1533579..1534036 +
Gvermi5764.t1.exon2Gvermi5764.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1534146..1534202 +
Gvermi5764.t1.exon3Gvermi5764.t1.exon3Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 1534253..1534847 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1.intron1Gvermi5764.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 1534037..1534145 +
Gvermi5764.t1.intron2Gvermi5764.t1.intron2Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 1534203..1534252 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5764.t1.stop1Gvermi5764.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 1534845..1534847 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=370bp
MKDFGKLPWVGLILFAISRLVSALRSRPELYCKFKELKEAHNMQLRTSGY
VPSDLETDGLYRHLLPETAVLPLKMATTRFCSYKGMLLSYIRSRTVFQNL
VNCEDFVTSLLVGRNAKEKDLRESFKRVVKSDFQYRNCFDIHHVLRIFRQ
YLSETQFYRSSKPELVEMEGVYANEDITEYGFYTLRHTRQFVASDAFPSL
ERSQPNRGMEEAVKKIFEGTTFTRLSWQAQSQDEHMKELLSMYECIPVAY
CIQKRNRPLLRQFALRSLCASPSSSSLERSFGIQGRIKTAVWDWLSTEKV
QKIVFCAFNNNVSSRSHHSLPRRGRSGFTTIQGVLPLATDANTQAVSPNY
EAICIADVTIHDGDEIEID*
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spliced messenger RNA

>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1110bp|location=Sequence derived from alignment at ScGOVlb_776:1533579..1534847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAAGACTTTGGTAAGCTTCCGTGGGTGGGTCTTATTCTTTTTGCTAT
TTCAAGGTTGGTATCAGCTCTCAGAAGTCGCCCTGAGCTATACTGCAAGT
TCAAAGAATTGAAAGAAGCGCACAATATGCAGCTTCGCACATCTGGATAC
GTTCCAAGTGATCTGGAAACAGATGGACTTTACCGCCATCTTCTTCCTGA
AACAGCTGTATTGCCACTTAAGATGGCAACAACGAGATTCTGTTCGTACA
AAGGAATGCTTCTATCGTACATAAGAAGTCGAACTGTATTCCAGAATCTG
GTAAACTGCGAAGATTTTGTTACAAGTTTATTGGTTGGTAGAAATGCTAA
AGAGAAGGATTTGAGAGAGAGTTTTAAGCGAGTTGTGAAGAGTGATTTTC
AGTACAGGAATTGCTTTGACATTCATCATGTCTTGCGTATTTTCCGGCAG
TACCTGAGCGAAACGCAGTTCTACAGGTCTTCTAAGCCCGAACTAGTGGA
AATGGAAGGCGTATATGCTAACGAAGATATAACTGAATACGGATTTTACA
CACTTCGACATACTCGCCAGTTTGTGGCCTCTGATGCGTTTCCAAGCTTG
GAACGTAGTCAACCCAATAGAGGAATGGAGGAGGCTGTTAAGAAAATCTT
CGAAGGGACTACATTCACGCGGCTATCCTGGCAAGCGCAGTCTCAGGACG
AACATATGAAGGAGCTTCTATCAATGTATGAATGTATTCCAGTGGCTTAT
TGCATTCAAAAGAGAAACAGGCCTTTGCTACGCCAGTTTGCTTTAAGAAG
TTTATGCGCAAGTCCGTCATCGTCTTCTTTAGAACGCAGTTTTGGTATAC
AGGGAAGAATCAAAACTGCCGTTTGGGACTGGCTTAGTACGGAAAAGGTA
CAAAAGATAGTTTTTTGCGCGTTCAACAACAATGTTTCGTCTCGCAGTCA
TCATAGTTTACCAAGAAGAGGTAGAAGTGGTTTTACTACGATTCAAGGTG
TTCTTCCGCTTGCGACAGATGCAAACACGCAAGCTGTTTCTCCCAACTAT
GAAGCAATCTGTATCGCTGACGTCACGATTCATGATGGAGATGAAATCGA
GATTGATTAG
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protein sequence of Gvermi5764.t1

>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=370bp
MKDFGKLPWVGLILFAISRLVSALRSRPELYCKFKELKEAHNMQLRTSGY
VPSDLETDGLYRHLLPETAVLPLKMATTRFCSYKGMLLSYIRSRTVFQNL
VNCEDFVTSLLVGRNAKEKDLRESFKRVVKSDFQYRNCFDIHHVLRIFRQ
YLSETQFYRSSKPELVEMEGVYANEDITEYGFYTLRHTRQFVASDAFPSL
ERSQPNRGMEEAVKKIFEGTTFTRLSWQAQSQDEHMKELLSMYECIPVAY
CIQKRNRPLLRQFALRSLCASPSSSSLERSFGIQGRIKTAVWDWLSTEKV
QKIVFCAFNNNVSSRSHHSLPRRGRSGFTTIQGVLPLATDANTQAVSPNY
EAICIADVTIHDGDEIEID*
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mRNA from alignment at ScGOVlb_776:1533579..1534847+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1269bp|location=Sequence derived from alignment at ScGOVlb_776:1533579..1534847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAGACTTTGGTAAGCTTCCGTGGGTGGGTCTTATTCTTTTTGCTAT
TTCAAGGTTGGTATCAGCTCTCAGAAGTCGCCCTGAGCTATACTGCAAGT
TCAAAGAATTGAAAGAAGCGCACAATATGCAGCTTCGCACATCTGGATAC
GTTCCAAGTGATCTGGAAACAGATGGACTTTACCGCCATCTTCTTCCTGA
AACAGCTGTATTGCCACTTAAGATGGCAACAACGAGATTCTGTTCGTACA
AAGGAATGCTTCTATCGTACATAAGAAGTCGAACTGTATTCCAGAATCTG
GTAAACTGCGAAGATTTTGTTACAAGTTTATTGGTTGGTAGAAATGCTAA
AGAGAAGGATTTGAGAGAGAGTTTTAAGCGAGTTGTGAAGAGTGATTTTC
AGTACAGGAATTGCTTTGACATTCATCATGTCTTGCGTATTTTCCGGCAG
TACCTGAGGTTCTTCGACGATGAAAGCTCACTAATTTCCGAGGTATTTCC
GGCCACTCGAGATCTTAAGCAGAGAATTTAGCTGATACCACTGACGCCTT
TCTTTACGGACGAGAAGCGAAACGCAGTTCTACAGGTCTTCTAAGCCCGA
ACTAGTGGAAATGGAAGGCGTATAGTGCTAGTTACTCCAATTCATTACGT
AGCTTATGCGCTGAATGTCCGCAGTGCTAACGAAGATATAACTGAATACG
GATTTTACACACTTCGACATACTCGCCAGTTTGTGGCCTCTGATGCGTTT
CCAAGCTTGGAACGTAGTCAACCCAATAGAGGAATGGAGGAGGCTGTTAA
GAAAATCTTCGAAGGGACTACATTCACGCGGCTATCCTGGCAAGCGCAGT
CTCAGGACGAACATATGAAGGAGCTTCTATCAATGTATGAATGTATTCCA
GTGGCTTATTGCATTCAAAAGAGAAACAGGCCTTTGCTACGCCAGTTTGC
TTTAAGAAGTTTATGCGCAAGTCCGTCATCGTCTTCTTTAGAACGCAGTT
TTGGTATACAGGGAAGAATCAAAACTGCCGTTTGGGACTGGCTTAGTACG
GAAAAGGTACAAAAGATAGTTTTTTGCGCGTTCAACAACAATGTTTCGTC
TCGCAGTCATCATAGTTTACCAAGAAGAGGTAGAAGTGGTTTTACTACGA
TTCAAGGTGTTCTTCCGCTTGCGACAGATGCAAACACGCAAGCTGTTTCT
CCCAACTATGAAGCAATCTGTATCGCTGACGTCACGATTCATGATGGAGA
TGAAATCGAGATTGATTAG
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Coding sequence (CDS) from alignment at ScGOVlb_776:1533579..1534847+

>Gvermi5764.t1 ID=Gvermi5764.t1|Name=Gvermi5764.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1110bp|location=Sequence derived from alignment at ScGOVlb_776:1533579..1534847+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAAAGACTTTGGTAAGCTTCCGTGGGTGGGTCTTATTCTTTTTGCTAT
TTCAAGGTTGGTATCAGCTCTCAGAAGTCGCCCTGAGCTATACTGCAAGT
TCAAAGAATTGAAAGAAGCGCACAATATGCAGCTTCGCACATCTGGATAC
GTTCCAAGTGATCTGGAAACAGATGGACTTTACCGCCATCTTCTTCCTGA
AACAGCTGTATTGCCACTTAAGATGGCAACAACGAGATTCTGTTCGTACA
AAGGAATGCTTCTATCGTACATAAGAAGTCGAACTGTATTCCAGAATCTG
GTAAACTGCGAAGATTTTGTTACAAGTTTATTGGTTGGTAGAAATGCTAA
AGAGAAGGATTTGAGAGAGAGTTTTAAGCGAGTTGTGAAGAGTGATTTTC
AGTACAGGAATTGCTTTGACATTCATCATGTCTTGCGTATTTTCCGGCAG
TACCTGAGCGAAACGCAGTTCTACAGGTCTTCTAAGCCCGAACTAGTGGA
AATGGAAGGCGTATATGCTAACGAAGATATAACTGAATACGGATTTTACA
CACTTCGACATACTCGCCAGTTTGTGGCCTCTGATGCGTTTCCAAGCTTG
GAACGTAGTCAACCCAATAGAGGAATGGAGGAGGCTGTTAAGAAAATCTT
CGAAGGGACTACATTCACGCGGCTATCCTGGCAAGCGCAGTCTCAGGACG
AACATATGAAGGAGCTTCTATCAATGTATGAATGTATTCCAGTGGCTTAT
TGCATTCAAAAGAGAAACAGGCCTTTGCTACGCCAGTTTGCTTTAAGAAG
TTTATGCGCAAGTCCGTCATCGTCTTCTTTAGAACGCAGTTTTGGTATAC
AGGGAAGAATCAAAACTGCCGTTTGGGACTGGCTTAGTACGGAAAAGGTA
CAAAAGATAGTTTTTTGCGCGTTCAACAACAATGTTTCGTCTCGCAGTCA
TCATAGTTTACCAAGAAGAGGTAGAAGTGGTTTTACTACGATTCAAGGTG
TTCTTCCGCTTGCGACAGATGCAAACACGCAAGCTGTTTCTCCCAACTAT
GAAGCAATCTGTATCGCTGACGTCACGATTCATGATGGAGATGAAATCGA
GATTGATTAG
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