Gvermi5707.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5707.t1
Unique Name	Gvermi5707.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	239

Homology

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BLAST of Gvermi5707.t1 vs. uniprot
Match: A0A2V3IX42_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IX42_9FLOR)

HSP 1 Score: 119 bits (298), Expect = 2.000e-29
Identity = 115/243 (47.33%), Postives = 142/243 (58.44%), Query Frame = 0

Query:   16 LALLLLLSLAERVRAVPTLRSPLSRGFFDFFTPTESMPQSTPS-------------------PSIADLTDTPLDSLPEDDVQPDDDEFFFVPSPSPVPSVTPLAALXXXXXXXXXXXXXXXXXPVPEQLSFEQVPEQTALPLPTFVLGTDVDP-DQMLANDMDPLDPSKAVDPRSSATTQIASTASTGISVVALVAVAVAVLAPALLIYYGIRRRRAAGFNAMPPTVADTSTYRPASQFTVGE 238
            L  LLLLSL++   +VPT+    SRG FD F+ + + P  T S                    ++ADL+D PLD+ PED+              +P  S+      XXXXXXXXXXXXXXXXX         Q P    +P          DP DQ+L  D    D +KA DPRSS  +Q+ STAS+GISV+ALVAVAVA+LAPAL IY+GIRRRRAAGFNAMPPT +D STY+P SQF+VG+
Sbjct:   10 LTALLLLSLSQSGHSVPTVPLTASRGLFDIFSSSTAEPTPTASVXXXXXXXXXXXXXXXXXXTAVADLSDQPLDTDPEDE--------------APESSIXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXQTPVSPIIPY-----DDSQDPFDQLLIPDGSDSD-AKAADPRSSGASQVLSTASSGISVLALVAVAVAILAPALFIYWGIRRRRAAGFNAMPPTTSDNSTYQPTSQFSVGQ 231

The following BLAST results are available for this feature:

BLAST of Gvermi5707.t1 vs. uniprot

BLAST of Gvermi5707.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A2V3IX42_9FLOR	2.000e-29	47.33	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..65
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 26..30
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 184..207
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..183
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 208..238
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..14
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 15..25
None	No IPR available	TMHMM	TMhelix		coord: 184..206

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_776	contig	ScGOVlb_776:1158516..1159232 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5707.t1	Gvermi5707.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_776 1158516..1159232 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5707.t1 ID=Gvermi5707.t1|Name=Gvermi5707.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=239bp
MTTRAAPSTLLLPKLLALLLLLSLAERVRAVPTLRSPLSRGFFDFFTPTE
SMPQSTPSPSIADLTDTPLDSLPEDDVQPDDDEFFFVPSPSPVPSVTPLA
ALTPEPSATPLETEQPEVTPVPEQLSFEQVPEQTALPLPTFVLGTDVDPD
QMLANDMDPLDPSKAVDPRSSATTQIASTASTGISVVALVAVAVAVLAPA
LLIYYGIRRRRAAGFNAMPPTVADTSTYRPASQFTVGE*