Gvermi5627.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5627.t1
Unique NameGvermi5627.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Homology
BLAST of Gvermi5627.t1 vs. uniprot
Match: A0A2V3IPQ1_9FLOR (Fucoxanthin-chlorophyll a-c binding protein A, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPQ1_9FLOR)

HSP 1 Score: 369 bits (947), Expect = 3.390e-128
Identity = 175/217 (80.65%), Postives = 197/217 (90.78%), Query Frame = 0
Query:    1 MVAFVSALSLGARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVPLY 217
            MVAF+ AL+LG+RPAL RSSICGA+LS   VSRG VRM+E SPSVPFL KP+NLSEDM GYAGFDPFA+S  +DVKWLQ++EIKHGR+CMLAFLGF+VQEFVHLPGPEFANPVATEA +QVP+AGLWQIFLFCGL EFI HKGKITY+NMFEDGAVPGELGFNPMGLK  E+ +L+EIKNGRLAM GVGGVIHSM LYK+PV+AQLLDFKPM++P Y
Sbjct:    1 MVAFIPALALGSRPALARSSICGAQLSHTAVSRGAVRMSESSPSVPFLAKPRNLSEDMPGYAGFDPFALSDNIDVKWLQQAEIKHGRVCMLAFLGFLVQEFVHLPGPEFANPVATEALFQVPAAGLWQIFLFCGLMEFIGHKGKITYVNMFEDGAVPGELGFNPMGLKITERVKLQEIKNGRLAMVGVGGVIHSMLLYKVPVIAQLLDFKPMALPYY 217          
BLAST of Gvermi5627.t1 vs. uniprot
Match: Q7X8N6_GRIJA (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7X8N6_GRIJA)

HSP 1 Score: 328 bits (841), Expect = 4.750e-112
Identity = 154/212 (72.64%), Postives = 179/212 (84.43%), Query Frame = 0
Query:    1 MVAFVSALSLGARPALTRSSICGARLSAATV-SRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKP 211
            M AFV ALSL ARP L+RS++CGA +SAA   +   V M+++SPSVPFLPKPKNLSEDMVGY GFDP  +S+LVD+KWLQESEIKHGR+CMLA  G + QEFVHLP P +ANP+ATEA  QVPSA LWQIFLFCGL+EF+LHKGKI+Y++MF DGAVPGELGFNPM LK  +  +LKEIKNGRLAMC VGG IHSMF+YK P++AQLLDFKP
Sbjct:    1 MAAFVPALSLAARPTLSRSALCGAAVSAAVAPAPSAVSMSDLSPSVPFLPKPKNLSEDMVGYTGFDPLGLSNLVDIKWLQESEIKHGRVCMLAVAGILAQEFVHLPDPRYANPLATEALNQVPSAALWQIFLFCGLAEFVLHKGKISYVDMFSDGAVPGELGFNPMNLKISDDMKLKEIKNGRLAMCAVGGFIHSMFIYKTPIIAQLLDFKP 212          
BLAST of Gvermi5627.t1 vs. uniprot
Match: Q7XY90_GRIJA (Light-harvest protein n=1 Tax=Griffithsia japonica TaxID=83288 RepID=Q7XY90_GRIJA)

HSP 1 Score: 266 bits (679), Expect = 1.850e-87
Identity = 132/218 (60.55%), Postives = 160/218 (73.39%), Query Frame = 0
Query:    1 MVAFVSALSLGARPALTRSSICGARLSAA--TVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVPL 216
            M AFV  L     P L+RSS+ GA LS A    +   V M+E S SVPFL KP+NL + ++GY GFDP   +  VD +W+QE+EIKHGR+ MLA LG +VQEF+HLP   F NP+ATEAF+QVPSAGL+QIFLFCG +E  LHKGK++  +MF DGA PGELGFNPM L   +  RLKEIKNGRLAMC  GG IHSM LYK P++AQLLDF+P+ VP+
Sbjct:    1 MNAFVPTL-----PLLSRSSLGGASLSVAPRASAPATVSMSERSASVPFLKKPENLPDTLIGYTGFDPLNFTGRVDYRWMQEAEIKHGRVSMLAVLGMLVQEFIHLPAKGFENPLATEAFFQVPSAGLFQIFLFCGFAELYLHKGKLSPSDMFSDGATPGELGFNPMNLDVSDSLRLKEIKNGRLAMCASGGFIHSMLLYKTPIIAQLLDFQPLKVPM 213          
BLAST of Gvermi5627.t1 vs. uniprot
Match: R7QPP5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPP5_CHOCR)

HSP 1 Score: 253 bits (646), Expect = 4.340e-81
Identity = 116/154 (75.32%), Postives = 133/154 (86.36%), Query Frame = 0
Query:   63 GFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSVPL 216
            GFDP A+S L+DVKWLQESEIKHGRICMLAFLG +VQEFVHLP   F+NPVATEA  QVP+ GLWQIF+FCG+SEFILHKG+++Y +MF DGA PG+LGFNPM LK  ++ RL EIKNGRLAMCGVGGVIHSMF+YK P+VAQLLDFK M + L
Sbjct:  156 GFDPLALSQLMDVKWLQESEIKHGRICMLAFLGMLVQEFVHLPNAAFSNPVATEALGQVPAGGLWQIFIFCGISEFILHKGRVSYTDMFTDGAEPGKLGFNPMNLKITDRIRLAEIKNGRLAMCGVGGVIHSMFIYKTPIVAQLLDFKAMPLNL 309          
BLAST of Gvermi5627.t1 vs. uniprot
Match: A0A1X6NTR2_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NTR2_PORUM)

HSP 1 Score: 239 bits (609), Expect = 8.580e-77
Identity = 117/217 (53.92%), Postives = 152/217 (70.05%), Query Frame = 0
Query:    2 VAFVSALSLGARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGL-----KFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMS 213
            +AFV A ++  RP    +S  GAR+ +   S   V MA  S SVPFLP+P      M G  GFDP  +S  +D+KWL+E E+K+GR+ MLAFLG +VQEFVHLP P FANPVAT+AF+QVP+ GLWQ+FL CGL EF+ H+GK++Y +MFEDG +PG  GF+P+GL        +K  L E+KNGRLAM G+GGVIHS F+Y  P+V+QL  F P++
Sbjct:    1 MAFVCAAAI--RP----TSFIGARVCSVAPSAATVTMAARSASVPFLPQPAACDGSMAGDVGFDPLNLSGFIDIKWLREGELKNGRVAMLAFLGVLVQEFVHLPSPLFANPVATDAFFQVPAGGLWQVFLACGLCEFVSHRGKLSYDDMFEDGRIPGNFGFDPLGLYKGTPAQKKKLELAEVKNGRLAMIGIGGVIHSNFIYHQPIVSQLTHFVPIT 211          
BLAST of Gvermi5627.t1 vs. uniprot
Match: A0A7S0T6N2_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T6N2_9RHOD)

HSP 1 Score: 222 bits (565), Expect = 3.470e-70
Identity = 111/198 (56.06%), Postives = 142/198 (71.72%), Query Frame = 0
Query:   19 SSICGARLSAATVSRG--IVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFD----EKTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFK 210
            S   GAR+S A V R   +V MAE S SVPFL KP N+ E MVGY GFDP  +S+ +  ++LQESEIKHGRICMLA +GF+VQE VHLPG  F+  +ATEAF +VP+ GLWQIF+ CG++E+I HKGK+TY+++  D   PG +GF+P+ L  D    +K +L EIKNGRLAM  +GG IH M+L K  V+ QL +FK
Sbjct:    9 SGFSGARVSTAAVCRSSNVVMMAEKSASVPFLSKPANIDESMVGYTGFDPLGLSTYLSARFLQESEIKHGRICMLAVVGFLVQEVVHLPGEVFSAKLATEAFSKVPTGGLWQIFIACGVAEYIGHKGKMTYMDISADKGTPGAMGFDPLNLGKDPEKFKKFQLNEIKNGRLAMIAIGGFIHQMWLTKQGVLEQLGNFK 206          
BLAST of Gvermi5627.t1 vs. uniprot
Match: M2VTV2_GALSU (Light-harvesting complex protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2VTV2_GALSU)

HSP 1 Score: 214 bits (544), Expect = 9.180e-67
Identity = 114/204 (55.88%), Postives = 138/204 (67.65%), Query Frame = 0
Query:   16 LTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFED-GAVPGELGFNPMGLKFDEKTRLK----EIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSV 214
            L+R S+C  RL    VS    +    S SVPFL +PKNL     G  GFDP  IS L+D++WL+ESEIKHGRICMLA +GFIVQEFVHLPG  F+N VA +A +QVPS GLWQIFLF GL EF+++KGK+T L+MF D    PG+ GF+P+GL  D + R +    EIKNGRLAM  VGG IH M L    VV QL  F+ + V
Sbjct:   27 LSRQSLCVPRLFQTLVSNASTK----SLSVPFLERPKNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRICMLAAVGFIVQEFVHLPGEVFSNKVAIDALFQVPSGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQARKRYEVAEIKNGRLAMLAVGGFIHHMLLTHQGVVEQLTHFRSLPV 226          
BLAST of Gvermi5627.t1 vs. uniprot
Match: Q9FDZ6_GALSU (Light-harvesting protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=Q9FDZ6_GALSU)

HSP 1 Score: 213 bits (541), Expect = 2.790e-66
Identity = 108/178 (60.67%), Postives = 129/178 (72.47%), Query Frame = 0
Query:   42 SPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFED-GAVPGELGFNPMGLKFDEKTRLK----EIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPMSV 214
            SPSVPFL +P+NL     G  GFDP  IS L+D++WL+ESEIKHGRI MLA LGFIVQEFVHLPG  F+N VA +AF+QVP  GLWQIFLF GL EF+++KGK+T L+MF D    PG+ GF+P+GL  D +TR +    EIKNGRLAM  VGG IH MFL    VV QL  F+ + V
Sbjct:   48 SPSVPFLERPQNLDGTAPGDVGFDPLYISDLLDIQWLRESEIKHGRIAMLAALGFIVQEFVHLPGQVFSNKVAVDAFFQVPRGGLWQIFLFIGLLEFVMNKGKMTPLDMFSDPNRKPGDFGFDPLGLGKDPQTRRRYQVAEIKNGRLAMLAVGGFIHHMFLTHQGVVEQLTHFRSLPV 225          
BLAST of Gvermi5627.t1 vs. uniprot
Match: A0A5J4YSS5_PORPP (Chlorophyll a-b binding protein 1B-21, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YSS5_PORPP)

HSP 1 Score: 200 bits (508), Expect = 1.620e-61
Identity = 105/219 (47.95%), Postives = 146/219 (66.67%), Query Frame = 0
Query:    2 VAFVSALSLG-ARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGA-VPGELGFNPMGLKFDE------KTRLKEIKNGRLAMCGVGGVIHSMFLYKMPVVAQLLDFKPM 212
            +AFVS +  G ++  + + S+C A  +A       ++M   S SVPFL KP+ L   M G  GFDP   S+ + +++L+ESEIKHGR+ MLA LG  +QE VHLPG EF+NP+ATEAF+QVP+ G+ QIFL CGL+EFI H+GK+TY+++  D    PG +GF+P+ +   +      K  L E+KNGRLAM GVGG+IH+MF+   P + QL  FKP+
Sbjct:    1 MAFVSGVGSGLSQSRVAQRSVCKANGAA-------LKMEGKSASVPFLTKPEKLDGSMAGDVGFDPLGFSNYLSLEYLRESEIKHGRVAMLACLGIWIQEIVHLPGKEFSNPLATEAFFQVPAGGIAQIFLACGLAEFIGHRGKMTYMDIAADKERKPGAMGFDPLNMSKGKSAEAMKKLELNEVKNGRLAMIGVGGLIHAMFISHQPTLFQLAHFKPL 212          
BLAST of Gvermi5627.t1 vs. uniprot
Match: L1IG53_GUITC (Light-harvesting Chl a protein 9 n=2 Tax=Guillardia theta TaxID=55529 RepID=L1IG53_GUITC)

HSP 1 Score: 195 bits (495), Expect = 1.940e-59
Identity = 96/179 (53.63%), Postives = 119/179 (66.48%), Query Frame = 0
Query:   23 GARLSAATVSRGIVRMAEVSPSVPFLPKPKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQEFVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNMFEDGAVPGELGFNPMGLKFDEKTR----LKEIKNGRLAMCGVGGVIHSMFL 197
            G R   + VS   ++M ++S SVPFLP+P  L   MVG  GFDPF  SS  D+KWL+ESE+KHGR+CMLA LG+IVQEFVHLP    +NPV +EAFYQVP+ GLWQIF F G  E   H  K++   MF DG  PG  GF+P+G   + + R    L E+KNGRLAM G  G+IH  F+
Sbjct:   25 GVRAKTSAVSG--MKMQQMSQSVPFLPRPAALDGKMVGDVGFDPFGFSSKYDIKWLRESELKHGRVCMLASLGYIVQEFVHLPFEATSNPVGSEAFYQVPAGGLWQIFAFIGAIEHFSHNFKMSGSTMFSDGRTPGNFGFDPLGFGKNPQARARYELAELKNGRLAMLGFSGMIHGSFI 201          
The following BLAST results are available for this feature:
BLAST of Gvermi5627.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IPQ1_9FLOR3.390e-12880.65Fucoxanthin-chlorophyll a-c binding protein A, chl... [more]
Q7X8N6_GRIJA4.750e-11272.64Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
Q7XY90_GRIJA1.850e-8760.55Light-harvest protein n=1 Tax=Griffithsia japonica... [more]
R7QPP5_CHOCR4.340e-8175.32Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6NTR2_PORUM8.580e-7753.92Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S0T6N2_9RHOD3.470e-7056.06Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
M2VTV2_GALSU9.180e-6755.88Light-harvesting complex protein n=1 Tax=Galdieria... [more]
Q9FDZ6_GALSU2.790e-6660.67Light-harvesting protein n=1 Tax=Galdieria sulphur... [more]
A0A5J4YSS5_PORPP1.620e-6147.95Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
L1IG53_GUITC1.940e-5953.63Light-harvesting Chl a protein 9 n=2 Tax=Guillardi... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D1.10.3460.10Chlorophyll a/b binding protein domaincoord: 47..215
e-value: 1.8E-37
score: 131.2
NoneNo IPR availablePANTHERPTHR21649:SF89CHLOROPHYLL A-B BINDING PROTEIN 6, CHLOROPLASTICcoord: 42..212
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 13..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..12
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..217
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 36..209
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 51..194
e-value: 1.2E-34
score: 120.2
IPR001344Chlorophyll A-B binding protein, plant and chromistaPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 42..212

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:783265..783918 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1Gvermi5627.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 783265..783918 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MVAFVSALSLGARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQE
FVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNM
FEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKM
PVVAQLLDFKPMSVPLY*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR001344Chloro_AB-bd_pln