Gvermi5627.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5627.t1
Unique NameGvermi5627.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length218
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:783265..783918 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703151.1
Preferred nameLhcr1
PFAMsChloroa_b-bind
Max annot lvl2759|Eukaryota
KEGG koko:K08907,ko:K08910
KEGG Pathwayko00196,map00196
Evalue1.3e-66
EggNOG OGs2D9V2@1|root,2S5EH@2759|Eukaryota
DescriptionChlorophyll A-B binding protein
COG categoryU
BRITEko00000,ko00001,ko00194
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5627Gvermi5627Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 783265..783918 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1.start1Gvermi5627.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 783265..783267 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1.CDS1Gvermi5627.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 783265..783918 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1.exon1Gvermi5627.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 783265..783918 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1.stop1Gvermi5627.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 783916..783918 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5627.t1Gvermi5627.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 783265..783918 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=218bp
MVAFVSALSLGARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQE
FVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNM
FEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKM
PVVAQLLDFKPMSVPLY*
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spliced messenger RNA

>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_776:783265..783918+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCTTTCGTCTCCGCTCTCTCCCTTGGCGCACGCCCTGCCTTGAC
GCGCTCATCGATATGTGGCGCACGACTTTCCGCCGCAACGGTTTCTCGCG
GCATCGTTCGAATGGCCGAGGTCTCCCCATCTGTACCGTTCCTCCCCAAG
CCGAAGAATCTATCCGAAGACATGGTGGGGTACGCGGGCTTCGACCCATT
CGCCATTTCTAGCTTGGTTGACGTCAAGTGGCTACAAGAGTCAGAGATCA
AGCACGGCCGTATCTGCATGCTTGCCTTCCTCGGATTTATTGTGCAGGAA
TTCGTGCATCTTCCGGGCCCTGAATTCGCCAACCCGGTGGCTACTGAGGC
ATTTTATCAGGTGCCATCTGCCGGCTTGTGGCAGATCTTTTTGTTTTGTG
GTTTGAGTGAGTTCATTCTCCACAAGGGTAAGATCACCTACCTCAACATG
TTTGAGGACGGTGCCGTTCCTGGGGAGCTAGGGTTCAACCCCATGGGGCT
GAAGTTTGACGAGAAAACTAGGCTGAAAGAGATCAAGAACGGAAGACTGG
CCATGTGCGGCGTCGGTGGTGTGATCCATTCTATGTTCCTTTACAAGATG
CCTGTGGTTGCTCAGCTTCTTGACTTCAAACCGATGTCTGTACCACTGTA
TTAA
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protein sequence of Gvermi5627.t1

>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=218bp
MVAFVSALSLGARPALTRSSICGARLSAATVSRGIVRMAEVSPSVPFLPK
PKNLSEDMVGYAGFDPFAISSLVDVKWLQESEIKHGRICMLAFLGFIVQE
FVHLPGPEFANPVATEAFYQVPSAGLWQIFLFCGLSEFILHKGKITYLNM
FEDGAVPGELGFNPMGLKFDEKTRLKEIKNGRLAMCGVGGVIHSMFLYKM
PVVAQLLDFKPMSVPLY*
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mRNA from alignment at ScGOVlb_776:783265..783918+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=654bp|location=Sequence derived from alignment at ScGOVlb_776:783265..783918+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCTTTCGTCTCCGCTCTCTCCCTTGGCGCACGCCCTGCCTTGAC
GCGCTCATCGATATGTGGCGCACGACTTTCCGCCGCAACGGTTTCTCGCG
GCATCGTTCGAATGGCCGAGGTCTCCCCATCTGTACCGTTCCTCCCCAAG
CCGAAGAATCTATCCGAAGACATGGTGGGGTACGCGGGCTTCGACCCATT
CGCCATTTCTAGCTTGGTTGACGTCAAGTGGCTACAAGAGTCAGAGATCA
AGCACGGCCGTATCTGCATGCTTGCCTTCCTCGGATTTATTGTGCAGGAA
TTCGTGCATCTTCCGGGCCCTGAATTCGCCAACCCGGTGGCTACTGAGGC
ATTTTATCAGGTGCCATCTGCCGGCTTGTGGCAGATCTTTTTGTTTTGTG
GTTTGAGTGAGTTCATTCTCCACAAGGGTAAGATCACCTACCTCAACATG
TTTGAGGACGGTGCCGTTCCTGGGGAGCTAGGGTTCAACCCCATGGGGCT
GAAGTTTGACGAGAAAACTAGGCTGAAAGAGATCAAGAACGGAAGACTGG
CCATGTGCGGCGTCGGTGGTGTGATCCATTCTATGTTCCTTTACAAGATG
CCTGTGGTTGCTCAGCTTCTTGACTTCAAACCGATGTCTGTACCACTGTA
TTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:783265..783918+

>Gvermi5627.t1 ID=Gvermi5627.t1|Name=Gvermi5627.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=654bp|location=Sequence derived from alignment at ScGOVlb_776:783265..783918+ (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGGTTGCTTTCGTCTCCGCTCTCTCCCTTGGCGCACGCCCTGCCTTGAC
GCGCTCATCGATATGTGGCGCACGACTTTCCGCCGCAACGGTTTCTCGCG
GCATCGTTCGAATGGCCGAGGTCTCCCCATCTGTACCGTTCCTCCCCAAG
CCGAAGAATCTATCCGAAGACATGGTGGGGTACGCGGGCTTCGACCCATT
CGCCATTTCTAGCTTGGTTGACGTCAAGTGGCTACAAGAGTCAGAGATCA
AGCACGGCCGTATCTGCATGCTTGCCTTCCTCGGATTTATTGTGCAGGAA
TTCGTGCATCTTCCGGGCCCTGAATTCGCCAACCCGGTGGCTACTGAGGC
ATTTTATCAGGTGCCATCTGCCGGCTTGTGGCAGATCTTTTTGTTTTGTG
GTTTGAGTGAGTTCATTCTCCACAAGGGTAAGATCACCTACCTCAACATG
TTTGAGGACGGTGCCGTTCCTGGGGAGCTAGGGTTCAACCCCATGGGGCT
GAAGTTTGACGAGAAAACTAGGCTGAAAGAGATCAAGAACGGAAGACTGG
CCATGTGCGGCGTCGGTGGTGTGATCCATTCTATGTTCCTTTACAAGATG
CCTGTGGTTGCTCAGCTTCTTGACTTCAAACCGATGTCTGTACCACTGTA
TTAA
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