Gvermi5615.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5615.t1
Unique NameGvermi5615.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length243
Homology
BLAST of Gvermi5615.t1 vs. uniprot
Match: A0A2V3IDW3_9FLOR (Translocon-associated protein subunit gamma n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IDW3_9FLOR)

HSP 1 Score: 233 bits (594), Expect = 1.020e-74
Identity = 124/173 (71.68%), Postives = 143/173 (82.66%), Query Frame = 0
Query:   70 MANDEFEGLVEDFGRRPSIARRLLYIFFAVEAVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARIRRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMVVAPFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSAMKAIGE 242
            MA D+ E L +DFGR+PS+ RRLLY+FFA+E VA  T+FFVRVFLID ++S VTL I A +S  +LS SYHNLAFA A+RIRRTA PPT+ A+KG  D F  AK RFE RIS+AALWYSCAYNNALFM++ PFL  +MLADKL GDLNLLVSGAAAASLALFNSKSA+KAIGE
Sbjct:    1 MATDDIELLADDFGRKPSLLRRLLYVFFALEVVAVCTVFFVRVFLIDTSSSLVTLSIAAFISAAVLSASYHNLAFAHASRIRRTASPPTKGAFKGNMDQFGAAKLRFERRISNAALWYSCAYNNALFMILTPFLATYMLADKLSGDLNLLVSGAAAASLALFNSKSALKAIGE 173          
BLAST of Gvermi5615.t1 vs. uniprot
Match: R7QPN5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QPN5_CHOCR)

HSP 1 Score: 213 bits (543), Expect = 5.400e-67
Identity = 106/170 (62.35%), Postives = 138/170 (81.18%), Query Frame = 0
Query:   73 DEFEGLVEDFGRRPSIARRLLYIFFAVEAVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARIRRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMVVAPFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSAMKAIGE 242
            DEF+ L++DFGRRPS+ +RL YI  ++E V    + FVR+FL+ ++AS VTLV+  L++ V+LS+SYHNLAFA+AAR+RR   PPT+ AYKG    +EKA A FEG ISSA+LWYSCAYNNA+FM+V P LG+++L DK+ GDLNLL+SGAAAA+LALFNS +A+KAIGE
Sbjct:    3 DEFDDLLDDFGRRPSVLKRLFYILLSLEPVLVTAILFVRIFLVSISASQVTLVLSVLLAAVLLSLSYHNLAFAKAARLRRAGSPPTKGAYKGDKAAYEKAMASFEGSISSASLWYSCAYNNAIFMIVTPLLGMYLLPDKVAGDLNLLLSGAAAAALALFNSNTALKAIGE 172          
BLAST of Gvermi5615.t1 vs. uniprot
Match: A0A1X6PAP8_PORUM (Translocon-associated protein subunit gamma n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PAP8_PORUM)

HSP 1 Score: 120 bits (302), Expect = 1.260e-30
Identity = 72/170 (42.35%), Postives = 103/170 (60.59%), Query Frame = 0
Query:   73 DEFEGLVEDFGRRPSIARRLLYIFFAVEAVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARIRRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMVVAPFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSAMKAIGE 242
            ++ + L+ DFGR    A+R+ Y   A    A   L F RVF +DV+ + +TLVI       +LS +YHNLAF  + R+R  +VPPT+++ KG       A A  E  +  AA+ YS  YNNALF+  A F+G +++  K+ G++N  VSG AAA  ALFNS+SA+K IG+
Sbjct:    5 EDIDTLLTDFGRTAPPAKRVAYAAAAAVPAALPILLFSRVFSVDVSRAIITLVIAGAAVAAVLSAAYHNLAFTTSVRLRGRSVPPTKASVKGDKARHTAALASHEAALERAAVAYSLFYNNALFVAGALFVGFYVVGTKVPGEVNYAVSGLAAAGFALFNSRSALKNIGQ 174          
BLAST of Gvermi5615.t1 vs. uniprot
Match: A0A5J4YZ22_PORPP (Translocon-associated protein subunit gamma n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YZ22_PORPP)

HSP 1 Score: 99.8 bits (247), Expect = 1.990e-22
Identity = 60/166 (36.14%), Postives = 98/166 (59.04%), Query Frame = 0
Query:   72 NDEFEGLVEDFGRRPSIARRLLYIFFAVEAVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARIRRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMV-VAPFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSA 236
            +DEF G   D+GR   + +RL+Y   A+  +    L +VRV  +D+ AS V +    +++ V+LS++YHN AFA++ ++R+   PP +SA++ + +  +KA    E  I  +A+ YS  YNNA+F+V + PF G   L+  +   +N   +   AA LAL NS+SA
Sbjct:    7 DDEFAGFEVDYGRTAGVGKRLMYWLLAILPINLPVLLYVRVLALDLQASGVLVGATVIIASVMLSLAYHNCAFAKSVKLRKGLEPPPKSAFRNRPEEHKKACDDLEANIRKSAVLYSVGYNNAIFLVCILPF-GFQFLSSLMETPMNFATAYTFAALLALVNSRSA 171          
BLAST of Gvermi5615.t1 vs. uniprot
Match: M2XNU4_GALSU (Translocon-associated protein subunit gamma n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XNU4_GALSU)

HSP 1 Score: 82.0 bits (201), Expect = 1.020e-15
Identity = 45/163 (27.61%), Postives = 92/163 (56.44%), Query Frame = 0
Query:   78 LVEDFGRRPSIARRLLYIFFAVEAVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARIRRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMVVAPFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSAMKAI 240
            L++ F +   ++  LLY+F A   +      ++ VF ++V ++ V+ +IG ++ ++++ +SYH  A+A+ +++ RT  PPT+S++K +   ++ A       +   A+ YS   NNA+F      +G ++L DK+  +LN +V+   +A     NS++A K +
Sbjct:   11 LLKTFPKEIPVSSYLLYMFLATPLLLLDVYLYLAVFHLNVVSASVSFIIGTVIGLLLMVVSYHKTAYAKWSKLDRTTEPPTKSSFKAKTSAYQSAVENHLRLLERTAISYSVMVNNAIFQAFLMVIGFYLLKDKVPDELNFVVTVTLSAVFVRLNSETAFKGV 173          
The following BLAST results are available for this feature:
BLAST of Gvermi5615.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IDW3_9FLOR1.020e-7471.68Translocon-associated protein subunit gamma n=1 Ta... [more]
R7QPN5_CHOCR5.400e-6762.35Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A1X6PAP8_PORUM1.260e-3042.35Translocon-associated protein subunit gamma n=1 Ta... [more]
A0A5J4YZ22_PORPP1.990e-2236.14Translocon-associated protein subunit gamma n=1 Ta... [more]
M2XNU4_GALSU1.020e-1527.61Translocon-associated protein subunit gamma n=1 Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009779Translocon-associated protein subunit gammaPFAMPF07074TRAP-gammacoord: 76..231
e-value: 6.0E-8
score: 32.5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 121..142
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 92..115
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 143..182
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 183..204
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 216..233
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 234..242
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 116..120
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 205..215
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..91
NoneNo IPR availableTMHMMTMhelixcoord: 120..142
NoneNo IPR availableTMHMMTMhelixcoord: 183..205
NoneNo IPR availableTMHMMTMhelixcoord: 93..115

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:752353..753081 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5615.t1Gvermi5615.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 752353..753081 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5615.t1 ID=Gvermi5615.t1|Name=Gvermi5615.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=243bp
MAGAAAPLPVACASGVALDVEPLEIVAACHAGRTSTMADVGSIWQSGSAK
QCGQAVTQSACSSLRKPFAMANDEFEGLVEDFGRRPSIARRLLYIFFAVE
AVAAATLFFVRVFLIDVNASPVTLVIGALVSVVILSMSYHNLAFARAARI
RRTAVPPTRSAYKGQADGFEKAKARFEGRISSAALWYSCAYNNALFMVVA
PFLGLHMLADKLGGDLNLLVSGAAAASLALFNSKSAMKAIGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009779SSR3