Gvermi5611.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5611.t1
Unique NameGvermi5611.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length487
Homology
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BLAST of Gvermi5611.t1 vs. uniprot
Match: A0A2V3IPV6_9FLOR (Transcription termination factor MTERF5, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IPV6_9FLOR)

HSP 1 Score: 210 bits (535), Expect = 1.100e-58
Identity = 163/429 (38.00%), Postives = 246/429 (57.34%), Query Frame = 0 
Query:   47 IRRFSSVQGCSQMLERTSSINQAKEIEATLRSLGATSAAKHALSVLSAQGSRVPETWPALLSVLNKHGINNFPLSRITSKLGIVSLLSITPTSASKTLDLFEKSLSISCHQQRQILSVRPDILLMDLNMIRETLNALHQLGMQPKHIRRILLRWPHILSLHPTAIYRLAKFLGRPPLSFPYYKVCFFIRRFPWIISIDIDSQMAPTIDWLSEYITHISPKSDLKQLLGVAPGLLVTKRANLHSVMHFLECEACLEQHERVSIMKKYPQILTCSTEKQLRPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFFKFWGVTDVSLFXXXXXXXXXXXXXXXXXXXXXXFMQEVGLSVDELSXXXXXXXXXXXXXXXXXTQFVKEMGCSVRDIGLNRVLSPSDEEFCRLIHIELSQYKSFLET 475
            +R    +Q  ++++      +Q   IE  LR+L A SAA  A   LS   + VP TW   L +L  +GI    LSR+ S+LGI+SLL+++P  A     L + ++S+S  Q+R++L+ RPD+LL D+N++  +L +L + G++ + ++R+++ WP +L LHP  + R+ +FL   PL  P + +   +RR PWI+  DIDSQMAP   WL EY+     + D  + +  AP +L   R++L+ VM FL     L   ++VS+++++P ILT S ++ L+P                     XXXXXXXXXXXXXXXXXX F     +++    XXXXXXXXXXXXXXXXXX       E+GL+V ++                  T+F +E G S+  +GL+R+LS SDE FC+L+H+    YK F E+
Sbjct:   31 LRHKHPLQPRAKLIHSAEKEDQVTNIETQLRALDAPSAADQAYVALSTPNTPVPSTWMDTLLLLKDYGITGELLSRMASRLGILSLLNVSPARAGSLFKLLDTAISLSASQKRRVLTSRPDLLLSDVNLVNSSLESLQEAGLRRRDLQRLVVIWPRMLLLHPAYVNRVTRFLQHSPLWIPKHMLRPLLRRAPWILVFDIDSQMAPVAYWLDEYVFPFLKRPDRTRFILSAPMVLSRSRSSLNEVMEFLWSNTRLTDTQQVSVLRQFPSILTFSVDEVLQPAVDYFVKDLHFSTSEVSRLIHXXXXXXXXXXXXXXXXXXKFLVSRRISNXXXXXXXXXXXXXXXXXXXXXXKMNYLEHELGLTVHDILKFPGYFSYDLEARIIPRTKFAQENGVSISKVGLSRMLSSSDETFCKLVHMTQESYKLFCES 459
The following BLAST results are available for this feature:
BLAST of Gvermi5611.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IPV6_9FLOR1.100e-5838.00Transcription termination factor MTERF5, chloropla... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003690Transcription termination factor, mitochondrial/chloroplasticSMARTSM00733mt_12coord: 410..441
e-value: 4.8E-4
score: 29.4
coord: 343..374
e-value: 0.0013
score: 28.0
coord: 159..189
e-value: 58.0
score: 12.5
coord: 231..264
e-value: 940.0
score: 4.1
coord: 377..409
e-value: 0.0017
score: 27.6
coord: 306..338
e-value: 0.002
score: 27.4
IPR003690Transcription termination factor, mitochondrial/chloroplasticPFAMPF02536mTERFcoord: 283..458
e-value: 7.8E-30
score: 103.9
coord: 89..257
e-value: 2.1E-8
score: 33.5
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 266..468
IPR003690Transcription termination factor, mitochondrial/chloroplasticPANTHERPTHR13068CGI-12 PROTEIN-RELATEDcoord: 157..258
IPR038538MTERF superfamily, mitochondrial/chloroplasticGENE3D1.25.70.10Transcription termination factor 3, mitochondrialcoord: 223..475
e-value: 1.4E-42
score: 147.7
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 266..468
NoneNo IPR availablePANTHERPTHR13068:SF36TRANSCRIPTION TERMINATION FACTOR MTEF1, CHLOROPLASTICcoord: 157..258

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:743526..745090 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1Gvermi5611.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 743526..745090 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=487bp
MSNFLDHGYENGLVKIPSHAPIETESLCPSLGVLGFYGDVKVARCRIRRF
SSVQGCSQMLERTSSINQAKEIEATLRSLGATSAAKHALSVLSAQGSRVP
ETWPALLSVLNKHGINNFPLSRITSKLGIVSLLSITPTSASKTLDLFEKS
LSISCHQQRQILSVRPDILLMDLNMIRETLNALHQLGMQPKHIRRILLRW
PHILSLHPTAIYRLAKFLGRPPLSFPYYKVCFFIRRFPWIISIDIDSQMA
PTIDWLSEYITHISPKSDLKQLLGVAPGLLVTKRANLHSVMHFLECEACL
EQHERVSIMKKYPQILTCSTEKQLRPALHFLRNTLSLEHFEVIKIVRSFP
YILTLDVQQEMIPVVEFFKFWGVTDVSLFVKQFPSILGYDLRQNTLPKVE
YFMQEVGLSVDELSQFPACFSYDLGSRIIPRTQFVKEMGCSVRDIGLNRV
LSPSDEEFCRLIHIELSQYKSFLETRVQNIEGKDLV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003690MTERF
IPR038538MTERF_sf