Gvermi5611.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5611.t1
Unique NameGvermi5611.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length487
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:743526..745090 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FXW7
PFAMsmTERF
Max annot lvl2759|Eukaryota
KEGG koko:K15032
Evalue9.1e-08
EggNOG OGsKOG1267@1|root,KOG1267@2759|Eukaryota
Descriptiontermination of mitochondrial transcription
COG categoryS
BRITEko00000,ko03012,ko03029
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5611Gvermi5611Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_776 743526..745090 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1Gvermi5611.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_776 743526..745090 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1.stop1Gvermi5611.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_776 743526..743528 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1.CDS1Gvermi5611.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 743526..744904 -
Gvermi5611.t1.CDS2Gvermi5611.t1.CDS2Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_776 745009..745090 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1.exon1Gvermi5611.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 743526..744904 -
Gvermi5611.t1.exon2Gvermi5611.t1.exon2Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_776 745009..745090 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1.intron1Gvermi5611.t1.intron1Gracilaria vermiculophylla HapMaleFtJ_2017 maleintronScGOVlb_776 744905..745008 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5611.t1.start1Gvermi5611.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_776 745088..745090 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=487bp
MSNFLDHGYENGLVKIPSHAPIETESLCPSLGVLGFYGDVKVARCRIRRF
SSVQGCSQMLERTSSINQAKEIEATLRSLGATSAAKHALSVLSAQGSRVP
ETWPALLSVLNKHGINNFPLSRITSKLGIVSLLSITPTSASKTLDLFEKS
LSISCHQQRQILSVRPDILLMDLNMIRETLNALHQLGMQPKHIRRILLRW
PHILSLHPTAIYRLAKFLGRPPLSFPYYKVCFFIRRFPWIISIDIDSQMA
PTIDWLSEYITHISPKSDLKQLLGVAPGLLVTKRANLHSVMHFLECEACL
EQHERVSIMKKYPQILTCSTEKQLRPALHFLRNTLSLEHFEVIKIVRSFP
YILTLDVQQEMIPVVEFFKFWGVTDVSLFVKQFPSILGYDLRQNTLPKVE
YFMQEVGLSVDELSQFPACFSYDLGSRIIPRTQFVKEMGCSVRDIGLNRV
LSPSDEEFCRLIHIELSQYKSFLETRVQNIEGKDLV*
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spliced messenger RNA

>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1461bp|location=Sequence derived from alignment at ScGOVlb_776:743526..745090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCAATTTCCTCGACCATGGATACGAAAACGGACTCGTCAAAATTCC
AAGTCATGCTCCGATAGAGACGGAATCTCTGTGCCCTTCGCTCGGAGTTC
TGGGCTTCTACGGTGACGTCAAAGTAGCAAGATGTCGAATACGGCGTTTC
TCATCCGTTCAGGGGTGTTCTCAAATGCTTGAAAGAACCAGCAGTATCAA
TCAAGCTAAAGAGATAGAAGCAACGCTCCGCTCCTTGGGTGCAACTTCAG
CCGCGAAGCATGCCCTCAGCGTTTTATCTGCTCAAGGCTCTCGGGTTCCT
GAAACATGGCCGGCTTTATTGTCCGTTCTGAACAAACACGGGATCAACAA
TTTTCCTTTGTCACGCATTACTTCGAAGCTAGGAATTGTCTCGCTTCTCA
GTATCACACCCACATCCGCTTCGAAAACATTAGACCTGTTTGAAAAGTCT
TTGAGTATCTCATGTCACCAACAGAGGCAAATTCTTTCCGTGAGACCGGA
TATCTTGCTAATGGACCTGAATATGATTCGTGAAACACTAAATGCGCTGC
ACCAACTCGGAATGCAACCGAAGCACATACGGCGCATTCTTTTGAGATGG
CCACACATTCTCTCGTTGCACCCCACGGCAATATACCGACTGGCAAAATT
TTTGGGCAGACCGCCCTTGTCGTTCCCATATTACAAAGTTTGTTTCTTTA
TACGCCGCTTCCCGTGGATCATATCCATTGACATTGACTCTCAAATGGCT
CCGACCATAGACTGGCTATCAGAGTACATAACACATATATCACCAAAGTC
TGATCTCAAACAGCTGCTCGGCGTCGCACCGGGTTTGCTAGTAACAAAAC
GAGCAAATCTCCACTCCGTGATGCACTTTCTAGAGTGTGAGGCTTGTCTG
GAGCAGCATGAGCGGGTATCCATCATGAAGAAATATCCGCAAATTCTCAC
CTGTTCTACTGAAAAGCAATTGAGGCCAGCCCTCCATTTCTTGAGAAACA
CCTTAAGTCTAGAACACTTTGAAGTCATCAAGATTGTTCGGTCCTTTCCG
TACATACTTACTCTGGACGTACAGCAAGAGATGATTCCGGTCGTGGAATT
CTTCAAATTTTGGGGTGTTACTGATGTTTCCCTGTTTGTCAAACAATTTC
CTTCCATTCTGGGTTACGATCTTCGGCAGAATACATTACCAAAAGTAGAG
TATTTTATGCAAGAGGTTGGACTCTCCGTGGATGAACTTTCCCAATTTCC
TGCATGTTTTTCATACGACTTGGGATCTCGAATCATACCTAGGACGCAAT
TTGTGAAAGAAATGGGGTGTTCCGTGCGTGACATTGGTCTCAATCGTGTT
CTATCTCCTTCAGACGAAGAATTTTGCCGACTTATTCATATTGAACTGAG
CCAGTATAAATCATTCTTAGAAACGCGCGTGCAGAACATTGAAGGGAAAG
ACTTGGTGTAA
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protein sequence of Gvermi5611.t1

>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=487bp
MSNFLDHGYENGLVKIPSHAPIETESLCPSLGVLGFYGDVKVARCRIRRF
SSVQGCSQMLERTSSINQAKEIEATLRSLGATSAAKHALSVLSAQGSRVP
ETWPALLSVLNKHGINNFPLSRITSKLGIVSLLSITPTSASKTLDLFEKS
LSISCHQQRQILSVRPDILLMDLNMIRETLNALHQLGMQPKHIRRILLRW
PHILSLHPTAIYRLAKFLGRPPLSFPYYKVCFFIRRFPWIISIDIDSQMA
PTIDWLSEYITHISPKSDLKQLLGVAPGLLVTKRANLHSVMHFLECEACL
EQHERVSIMKKYPQILTCSTEKQLRPALHFLRNTLSLEHFEVIKIVRSFP
YILTLDVQQEMIPVVEFFKFWGVTDVSLFVKQFPSILGYDLRQNTLPKVE
YFMQEVGLSVDELSQFPACFSYDLGSRIIPRTQFVKEMGCSVRDIGLNRV
LSPSDEEFCRLIHIELSQYKSFLETRVQNIEGKDLV*
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mRNA from alignment at ScGOVlb_776:743526..745090-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1565bp|location=Sequence derived from alignment at ScGOVlb_776:743526..745090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAATTTCCTCGACCATGGATACGAAAACGGACTCGTCAAAATTCC
AAGTCATGCTCCGATAGAGACGGAATCTCTGTGTCATCGTCTTTCCAGTC
TATGACAGATTACCACATTCTGAAGAAATCTCGCAGCCCCTGTTCAGCGA
CATTATTTCATGCATTCTGTTTGCCTATTGCAACAGGCCCTTCGCTCGGA
GTTCTGGGCTTCTACGGTGACGTCAAAGTAGCAAGATGTCGAATACGGCG
TTTCTCATCCGTTCAGGGGTGTTCTCAAATGCTTGAAAGAACCAGCAGTA
TCAATCAAGCTAAAGAGATAGAAGCAACGCTCCGCTCCTTGGGTGCAACT
TCAGCCGCGAAGCATGCCCTCAGCGTTTTATCTGCTCAAGGCTCTCGGGT
TCCTGAAACATGGCCGGCTTTATTGTCCGTTCTGAACAAACACGGGATCA
ACAATTTTCCTTTGTCACGCATTACTTCGAAGCTAGGAATTGTCTCGCTT
CTCAGTATCACACCCACATCCGCTTCGAAAACATTAGACCTGTTTGAAAA
GTCTTTGAGTATCTCATGTCACCAACAGAGGCAAATTCTTTCCGTGAGAC
CGGATATCTTGCTAATGGACCTGAATATGATTCGTGAAACACTAAATGCG
CTGCACCAACTCGGAATGCAACCGAAGCACATACGGCGCATTCTTTTGAG
ATGGCCACACATTCTCTCGTTGCACCCCACGGCAATATACCGACTGGCAA
AATTTTTGGGCAGACCGCCCTTGTCGTTCCCATATTACAAAGTTTGTTTC
TTTATACGCCGCTTCCCGTGGATCATATCCATTGACATTGACTCTCAAAT
GGCTCCGACCATAGACTGGCTATCAGAGTACATAACACATATATCACCAA
AGTCTGATCTCAAACAGCTGCTCGGCGTCGCACCGGGTTTGCTAGTAACA
AAACGAGCAAATCTCCACTCCGTGATGCACTTTCTAGAGTGTGAGGCTTG
TCTGGAGCAGCATGAGCGGGTATCCATCATGAAGAAATATCCGCAAATTC
TCACCTGTTCTACTGAAAAGCAATTGAGGCCAGCCCTCCATTTCTTGAGA
AACACCTTAAGTCTAGAACACTTTGAAGTCATCAAGATTGTTCGGTCCTT
TCCGTACATACTTACTCTGGACGTACAGCAAGAGATGATTCCGGTCGTGG
AATTCTTCAAATTTTGGGGTGTTACTGATGTTTCCCTGTTTGTCAAACAA
TTTCCTTCCATTCTGGGTTACGATCTTCGGCAGAATACATTACCAAAAGT
AGAGTATTTTATGCAAGAGGTTGGACTCTCCGTGGATGAACTTTCCCAAT
TTCCTGCATGTTTTTCATACGACTTGGGATCTCGAATCATACCTAGGACG
CAATTTGTGAAAGAAATGGGGTGTTCCGTGCGTGACATTGGTCTCAATCG
TGTTCTATCTCCTTCAGACGAAGAATTTTGCCGACTTATTCATATTGAAC
TGAGCCAGTATAAATCATTCTTAGAAACGCGCGTGCAGAACATTGAAGGG
AAAGACTTGGTGTAA
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Coding sequence (CDS) from alignment at ScGOVlb_776:743526..745090-

>Gvermi5611.t1 ID=Gvermi5611.t1|Name=Gvermi5611.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1461bp|location=Sequence derived from alignment at ScGOVlb_776:743526..745090- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGTCCAATTTCCTCGACCATGGATACGAAAACGGACTCGTCAAAATTCC
AAGTCATGCTCCGATAGAGACGGAATCTCTGTGCCCTTCGCTCGGAGTTC
TGGGCTTCTACGGTGACGTCAAAGTAGCAAGATGTCGAATACGGCGTTTC
TCATCCGTTCAGGGGTGTTCTCAAATGCTTGAAAGAACCAGCAGTATCAA
TCAAGCTAAAGAGATAGAAGCAACGCTCCGCTCCTTGGGTGCAACTTCAG
CCGCGAAGCATGCCCTCAGCGTTTTATCTGCTCAAGGCTCTCGGGTTCCT
GAAACATGGCCGGCTTTATTGTCCGTTCTGAACAAACACGGGATCAACAA
TTTTCCTTTGTCACGCATTACTTCGAAGCTAGGAATTGTCTCGCTTCTCA
GTATCACACCCACATCCGCTTCGAAAACATTAGACCTGTTTGAAAAGTCT
TTGAGTATCTCATGTCACCAACAGAGGCAAATTCTTTCCGTGAGACCGGA
TATCTTGCTAATGGACCTGAATATGATTCGTGAAACACTAAATGCGCTGC
ACCAACTCGGAATGCAACCGAAGCACATACGGCGCATTCTTTTGAGATGG
CCACACATTCTCTCGTTGCACCCCACGGCAATATACCGACTGGCAAAATT
TTTGGGCAGACCGCCCTTGTCGTTCCCATATTACAAAGTTTGTTTCTTTA
TACGCCGCTTCCCGTGGATCATATCCATTGACATTGACTCTCAAATGGCT
CCGACCATAGACTGGCTATCAGAGTACATAACACATATATCACCAAAGTC
TGATCTCAAACAGCTGCTCGGCGTCGCACCGGGTTTGCTAGTAACAAAAC
GAGCAAATCTCCACTCCGTGATGCACTTTCTAGAGTGTGAGGCTTGTCTG
GAGCAGCATGAGCGGGTATCCATCATGAAGAAATATCCGCAAATTCTCAC
CTGTTCTACTGAAAAGCAATTGAGGCCAGCCCTCCATTTCTTGAGAAACA
CCTTAAGTCTAGAACACTTTGAAGTCATCAAGATTGTTCGGTCCTTTCCG
TACATACTTACTCTGGACGTACAGCAAGAGATGATTCCGGTCGTGGAATT
CTTCAAATTTTGGGGTGTTACTGATGTTTCCCTGTTTGTCAAACAATTTC
CTTCCATTCTGGGTTACGATCTTCGGCAGAATACATTACCAAAAGTAGAG
TATTTTATGCAAGAGGTTGGACTCTCCGTGGATGAACTTTCCCAATTTCC
TGCATGTTTTTCATACGACTTGGGATCTCGAATCATACCTAGGACGCAAT
TTGTGAAAGAAATGGGGTGTTCCGTGCGTGACATTGGTCTCAATCGTGTT
CTATCTCCTTCAGACGAAGAATTTTGCCGACTTATTCATATTGAACTGAG
CCAGTATAAATCATTCTTAGAAACGCGCGTGCAGAACATTGAAGGGAAAG
ACTTGGTGTAA
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