Gvermi5552.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5552.t1
Unique NameGvermi5552.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length511
Homology
BLAST of Gvermi5552.t1 vs. uniprot
Match: A0A2V3IJR0_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJR0_9FLOR)

HSP 1 Score: 642 bits (1657), Expect = 1.250e-225
Identity = 340/509 (66.80%), Postives = 400/509 (78.59%), Query Frame = 0
Query:    1 MALELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLATDEDYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLASLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNEPSVIDALRTLCKDQSFAVREAADEALKGFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAFRRRLERSFDKEYVQPSASENATDPDMSSDMQVLANLVEDLKAGSPMAQVMAAIQLRKFDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDPDQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGKGDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFEELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGSLDALAQAGY 509
            +AL+LL+LSV+TSDNEFIRSTA +SIGQLPF+ E  A EAVR M+D+LATD DYSVRA AAA +GYA  + E  KS +FDAL RA+ EDSEWQV FSCLASLG+ +D+RA+P+L KWL+  NDLLVQA++GA                                      K EPSVIDALRTL KDQSFAVR+AA E+L+ FGC++PVK E+RSDEELIEAEVSNL+KGDE+GSAVESASDA RRRLERSFDKEYVQ  A   +       DM   + LV++LKAG+P++QVMAAIQLRK+DGKLA+EAV+SSN LD + S+ERLRAI VGLLARGG+ ERVI++LKTDPDQN+RSACCDALLDLGGG SA+  CI+TF+NDSHWLVR+SAAI LGTIGKG+E+VE VLIQSL   GVK LN PQDTV+HRHVVTALGFLGS+KALK FEEL+ ++DT  AVRYRIAAALRGIHC  S+   RLLI+D ++SVAEMAQGSLDALAQ  +
Sbjct:   71 VALDLLKLSVETSDNEFIRSTAAISIGQLPFEDEALATEAVRVMSDLLATDNDYSVRAAAAAAVGYATELPEFGKSALFDALMRALLEDSEWQVHFSCLASLGSLRDERAIPVLRKWLDAKNDLLVQASIGALGDLGAISAVADLLQLLGSKDMMTRQRLAQALGQMSDAKKEPSVIDALRTLSKDQSFAVRDAALESLERFGCASPVKTETRSDEELIEAEVSNLMKGDEAGSAVESASDALRRRLERSFDKEYVQTDAHIGSVREAGLRDMDAYSKLVDELKAGNPLSQVMAAIQLRKYDGKLAAEAVVSSNALDPQTSSERLRAISVGLLARGGDMERVIDVLKTDPDQNVRSACCDALLDLGGGPSAIATCIETFENDSHWLVRISAAITLGTIGKGNEEVEDVLIQSLKANGVKGLNAPQDTVLHRHVVTALGFLGSKKALKSFEELLSNEDTGGAVRYRIAAALRGIHCEESIVFARLLIDDEDESVAEMAQGSLDALAQHDF 579          
BLAST of Gvermi5552.t1 vs. uniprot
Match: R7QP05_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QP05_CHOCR)

HSP 1 Score: 401 bits (1030), Expect = 1.020e-129
Identity = 236/531 (44.44%), Postives = 305/531 (57.44%), Query Frame = 0
Query:    1 MALELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLATDEDYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLASLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNEPSVIDALRTLCKDQSFAVREAADEALKGFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAFRRRLERSFDKEYVQ-PSA--------------------SENATDPDMSSDMQV-LANLVEDLKAGSPMAQVMAAIQLRKFDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDPDQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGKGDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFEELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGSLDALAQAGY 509
            +ALELL LS+QTS NEFIRSTA ++IGQL F     A  AV                                                              + +D+RAVP+L++W++ DNDLLVQA++GA                                      ++EPSVIDALR L KDQSFAVR+AA EAL  FGC    K +S SD+E ++ EV+NL++GDE  +   SAS+A RRRLERSFDKEYV+ P A                     +N  DP+++        +L+ DLK G  + Q MA I+LRKFDGK  S+AV+ + VLD+   +ER+R++CV LLARGGE   VI++L  DPDQN+RSACCDA+ ++GGG   VEAC+  F+ D HWLVRVSAAIALG+IGKG    E  L+ SL P GV+ L  PQD+V+ RH VTALGFLGS+K L     L+  +D+D A+RYRIA ALRGIHC  S +L R L++D ++ V+ MAQG+LDALAQ G+
Sbjct:  136 VALELLLLSIQTSTNEFIRSTAAITIGQLQFPDPATASAAVDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLKDERAVPILLRWMDSDNDLLVQASIGAMGDIGDLGVVPDLLKVLGSKDMMTRQRLAHSLGQMKDARHEPSVIDALRILSKDQSFAVRDAAKEALTDFGCMEAAKPDSMSDDERLDLEVANLLEGDEGRNVGASASEAMRRRLERSFDKEYVEDPDAFSSVAKRSNTSQDESEDDDREQNIVDPEVAKQSDAEFEDLMNDLKHGEHLDQTMAGIRLRKFDGKRVSKAVLEAGVLDASRFSERVRSLCVTLLARGGELWEVISVLMGDPDQNVRSACCDAIAEIGGGSVGVEACLKAFKTDKHWLVRVSAAIALGSIGKGFPNAEQELMDSLLPGGVEGLESPQDSVVRRHAVTALGFLGSEKCLPVIRALLNGEDSDTAIRYRIAGALRGIHCKESAALVRTLVHDGDNEVSGMAQGTLDALAQYGF 666          
BLAST of Gvermi5552.t1 vs. uniprot
Match: A0A7S2ZJB6_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZJB6_9RHOD)

HSP 1 Score: 174 bits (442), Expect = 1.900e-44
Identity = 171/526 (32.51%), Postives = 271/526 (51.52%), Query Frame = 0
Query:    3 LELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLATDE-DYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLASLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGKNEPSVIDALRTLCKDQSFAVREAADEALKGFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAF--RRRLERSFDKEYVQPSASENATDP----DMSSDMQVLAN--------LVEDLKAGS-PMAQVMAAIQLRKFDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDPDQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGKGDEQVESVLIQSLS-PEGV---KDLNPPQDTVIHRHVVTALGFLGSQKALKRFEELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGSLDALAQAG 508
            LELL + +  S+NE + + A + + Q          + V  + D L+++E D  +R+ AA G+G   +         F+AL RA +E++EW V+++ LA+LGN  D +A+PLLI  L  +  +LVQ ++ + XXXXXXXXXXXXXXXXX                     + P V+  LR +   ++     AA+EAL+                    AEV+      ++G   ++ S  +  R  LERSF  E   PS+  + T P    +  ++ Q ++         L E LK G+    + +AAI+LR F   L  EAV  +  L+    ++R+RA  + L++       + ++L  DPDQN+RS+ C AL++ G   ++V A I  FQND+HW+VRVSAAIALG+    D++   VL +SL   +GV   + L PP    +  H +T+LGF+G+ +A+   +  ++S  ++  VR R AAAL  +  ++S+ +   L+ D +  V E A  S   L + G
Sbjct:   86 LELLMIIMDKSENEIVEAAATVMLAQFARKNPESTDKCVEILCDRLSSNEYDLGIRSAAATGLGELKHEGS------FEALRRAFYEETEWAVQYAVLAALGNLGDTKALPLLIDALGSNIRMLVQRSINSLXXXXXXXXXXXXXXXXXKVDVVVEQSLAQALGSFT---SYPKVVTVLREMANSENPLTCFAAEEALQS-------------------AEVAQDPDTAQNGGDKDAPSMNYTIRELLERSF--EQAHPSSRADRTLPLAHKEAEAEFQRMSPARQAEYKALCEQLKDGTIEDERAIAAIRLRSFPRGLKEEAVNQAGALNDP--SQRVRASVLNLVSHNPTV--LASVLLGDPDQNVRSSACSALVECGEMEASVLATIVAFQNDTHWIVRVSAAIALGSYAVNDKRAFDVLAESLCLKDGVPFAEGLKPPDALAVQCHAITSLGFVGNAEAVPLLD--MMSRSSEVKVRLRTAAALGFLADSQSLVILSRLVEDDDGEVVENAVASRARLLEEG 575          
BLAST of Gvermi5552.t1 vs. uniprot
Match: UPI000512F493 (HEAT repeat domain-containing protein n=1 Tax=Tolypothrix bouteillei TaxID=1246981 RepID=UPI000512F493)

HSP 1 Score: 62.0 bits (149), Expect = 5.330e-7
Identity = 61/204 (29.90%), Postives = 100/204 (49.02%), Query Frame = 0
Query:  276 LANLVEDLKAGSPMAQVMAAIQLRKFDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINI------LKTDPDQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGK-GDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFEELILSDDTDD------AVRYRI 466
            + +L+ED  +G P  Q  A ++L+  D K      I   +L S  S   +R + V  L   G+ E +  +      +  D ++ +RS   DAL  L   + A+EA     ++DS+W+VR SAA ALG + + GD +V + L  +L        N P + V   +   A+G LG+Q+ L + +   LS+++ D      A RYR+
Sbjct:    6 IESLLEDCLSGDPSRQTPAILKLQ--DLKAYEAVPILVELLSSYESN--IRGLAVQTLGWLGD-EEIQTVGPALMKMLADSEELVRSEAVDALATLDY-KQAIEAIKSLLRSDSNWIVRASAAEALGDLAEVGDSEVLAELELAL--------NDPIEPV-RAYSACAIGLLGTQEILPKLDVYFLSEESLDTKAEILAARYRL 194          
The following BLAST results are available for this feature:
BLAST of Gvermi5552.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IJR0_9FLOR1.250e-22566.80Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QP05_CHOCR1.020e-12944.44Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S2ZJB6_9RHOD1.900e-4432.51Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
UPI000512F4935.330e-729.90HEAT repeat domain-containing protein n=1 Tax=Toly... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004155PBS lyase HEAT-like repeatSMARTSM00567EZ_HEATcoord: 16..51
e-value: 160.0
score: 7.0
coord: 154..187
e-value: 65.0
score: 10.2
coord: 385..416
e-value: 0.072
score: 22.2
coord: 123..152
e-value: 3.3
score: 16.7
coord: 460..488
e-value: 620.0
score: 2.2
coord: 92..121
e-value: 0.0011
score: 28.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 268..508
e-value: 2.2E-18
score: 68.3
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 2..249
e-value: 4.6E-31
score: 110.3
NoneNo IPR availablePFAMPF13646HEAT_2coord: 111..200
e-value: 9.5E-14
score: 51.6
coord: 342..413
e-value: 8.4E-7
score: 29.3
NoneNo IPR availablePANTHERPTHR12697:SF5DEOXYHYPUSINE HYDROXYLASEcoord: 221..414
coord: 86..203
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 221..414
NoneNo IPR availablePANTHERPTHR12697PBS LYASE HEAT-LIKE PROTEINcoord: 86..203
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 10..506

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_776contigScGOVlb_776:388506..390038 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5552.t1Gvermi5552.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_776 388506..390038 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5552.t1 ID=Gvermi5552.t1|Name=Gvermi5552.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=511bp
MALELLQLSVQTSDNEFIRSTAILSIGQLPFDGENEAMEAVRTMADVLAT
DEDYSVRAGAAAGMGYANNVSESAKSIIFDALTRAIFEDSEWQVRFSCLA
SLGNQQDKRAVPLLIKWLNCDNDLLVQAAVGALGDIGDTSSIPELLKLLG
SSDMMTRQRLAHALGNMTEGKNEPSVIDALRTLCKDQSFAVREAADEALK
GFGCSNPVKEESRSDEELIEAEVSNLIKGDESGSAVESASDAFRRRLERS
FDKEYVQPSASENATDPDMSSDMQVLANLVEDLKAGSPMAQVMAAIQLRK
FDGKLASEAVISSNVLDSKVSTERLRAICVGLLARGGECERVINILKTDP
DQNIRSACCDALLDLGGGRSAVEACIDTFQNDSHWLVRVSAAIALGTIGK
GDEQVESVLIQSLSPEGVKDLNPPQDTVIHRHVVTALGFLGSQKALKRFE
ELILSDDTDDAVRYRIAAALRGIHCARSVSLGRLLINDSNDSVAEMAQGS
LDALAQAGYI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR004155PBS_lyase_HEAT
IPR011989ARM-like
IPR016024ARM-type_fold