Gvermi5457.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5457.t1
Unique NameGvermi5457.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length339
Homology
BLAST of Gvermi5457.t1 vs. uniprot
Match: A0A2V3IQ80_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IQ80_9FLOR)

HSP 1 Score: 117 bits (292), Expect = 3.570e-27
Identity = 60/128 (46.88%), Postives = 87/128 (67.97%), Query Frame = 0
Query:    1 MVMVKRNYKVYADLGLNFQFMVCTLTVLDTGAGPIFIVESLLPPHVRSHVHSSVPLDVANANNNPLKTIGTVDLVVRLGSLVVKLDFIVCGSLAALVILGCDYCDRFEDAIRPRLKQVQLKDGSTIPI 128
            ++M  RNYKVYAD+GL+   +   L VLDTGAGP F   S L     + +  +   D+ +AN  P+K++GT+ LVV+ G+ V +L FIVC +LA+ V+LGCDY DRF + IRP+ ++V+L +G T+PI
Sbjct:  134 LIMAHRNYKVYADIGLSKSLLSRRLAVLDTGAGPNFTRLSELDSDEPAGMQKACLPDIRDANKRPIKSLGTIKLVVQHGNHVFRLSFIVCTTLASPVVLGCDYFDRFVETIRPKNREVELDEGFTVPI 261          
BLAST of Gvermi5457.t1 vs. uniprot
Match: UPI001E1D3E38 (uncharacterized protein LOC123544752 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D3E38)

HSP 1 Score: 103 bits (256), Expect = 1.290e-20
Identity = 79/245 (32.24%), Postives = 120/245 (48.98%), Query Frame = 0
Query:    2 VMVKRNYKVYADLGLNFQFMVCTLTVLDTGAGPIFIVESLLPPHVRSH-VHSSVPLDVANANNNPLKTIGTVDLVVRLGSLVVKLDFIVCGSLAALVILGCDYCDRFEDAIRPRLKQVQLKDGSTIPIVRLPLRHASRKHVP----FPAVQEPSIAARESTKLRVSASVRILPESQVIGQVTSRQHDLGVIQPLPSLYEKSQPAIAKGTVQVPCNAPLEVFVANVGRTPQYLVKTQVIGMVTPRP 241
            V+   NY+V    GL  + M   + VLDTGAGP  I ES+LP     + VH+S    + +AN   LK  G V L ++LG LVV+    V   L+   ILGCD+ DR   AI P+ +++ L D   IP+  LP     +K +P        ++PS +   STK+R++ +  + P ++ +  V S    +  + P   +    + +++ G   +    P  V VAN G    +L K  VIG   P P
Sbjct:   26 VLKSANYRVSIAAGLTTRVMTPIVAVLDTGAGPNLIRESVLPDGWEKYRVHTSWNRRIVDANGKALKFRGVVQLALQLGELVVRTRLAVVSHLSVPCILGCDFIDRHVKAIVPKERRILLNDAKPIPL--LP---PGQKTIPPGEKDSGEKKPS-SDTPSTKVRLARAATLAPGAETVVSVQSDARGICFLLPKRDIRSAPRTSMSNGIQDICSRVPFLVKVANFGGDEIFLPKNAVIGYAFPHP 264          
BLAST of Gvermi5457.t1 vs. uniprot
Match: UPI001E1DB02D (uncharacterized protein LOC123543982 n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1DB02D)

HSP 1 Score: 100 bits (250), Expect = 7.060e-20
Identity = 82/244 (33.61%), Postives = 116/244 (47.54%), Query Frame = 0
Query:    6 RNYKVYADLGLNFQFMVCTLTVLDTGAGPIFIVESLLPPH-VRSHVHSSVPLDVANANNNPLKTIGTVDLVVRLGSLVVKLDFIVCGSLAALVILGCDYCDRFEDAIRPRLKQVQLKDGSTIPIVRLPLRHASRKHVPFPAVQEPSIAARE---STKLRVSASVRILPESQVIGQVTSRQHDLGVIQPLPSLYEKSQPA-IAKGTVQVPCNAPLEVFVANVGRTPQYLVKTQVIGMVTPRPLAM 244
            RNYKV A +G++   +     +LDTGAGP  I E++LP    R  +       +  A    L   G + L V+LG++ V+  FIV   LAA  ILGC + DR   AI P+ K+V L +GS IPI+     H S      P    PS   +E   STK+RVS  + + P S+ +  V      L  +Q    L + +    +A G  ++  N P  V V N     + L K  V+G   P P A+
Sbjct:   26 RNYKVSATVGVSATVLRPVSAILDTGAGPNLIKETILPEDWERYRIPGPPAFHIVGAGGRRLLQKGNITLTVQLGTIKVQARFIVVDGLAAECILGCQFIDRQVQAIHPKEKRVTLANGSVIPII-----HDSGP----PVCGRPSTPPKELPPSTKVRVSKMIVLPPRSECVVPVQCAAPGLRFLQ--ARLRDNATGVHMANGVAEIWPNQPFTVRVVNTSMKTRRLPKGMVLGHALPHPTAI 258          
BLAST of Gvermi5457.t1 vs. uniprot
Match: A0A2V3IJC9_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IJC9_9FLOR)

HSP 1 Score: 58.9 bits (141), Expect = 3.370e-7
Identity = 30/69 (43.48%), Postives = 42/69 (60.87%), Query Frame = 0
Query:    1 MVMVKRNYKVYADLGLNFQFMVCTLTVLDTGAGPIFIVESLLPPHVRSHVHSSVPLDVANANNNPLKTI 69
            M+M +RNYKVYAD+G +   +   L VLDTGAGP FI    L    RS +  +   D+ +AN  P+K++
Sbjct:   63 MIMARRNYKVYADIGSSKSLLSRRLAVLDTGAGPNFIRLYELQSDERSRIQEACLPDIRDANKRPIKSL 131          
The following BLAST results are available for this feature:
BLAST of Gvermi5457.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A2V3IQ80_9FLOR3.570e-2746.88Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
UPI001E1D3E381.290e-2032.24uncharacterized protein LOC123544752 n=1 Tax=Merce... [more]
UPI001E1DB02D7.060e-2033.61uncharacterized protein LOC123543982 n=1 Tax=Merce... [more]
A0A2V3IJC9_9FLOR3.370e-743.48Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..296
NoneNo IPR availableCDDcd00303retropepsin_likecoord: 22..104
e-value: 5.14986E-6
score: 42.3236

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2119975..2120991 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5457.t1Gvermi5457.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2119975..2120991 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5457.t1 ID=Gvermi5457.t1|Name=Gvermi5457.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=339bp
MVMVKRNYKVYADLGLNFQFMVCTLTVLDTGAGPIFIVESLLPPHVRSHV
HSSVPLDVANANNNPLKTIGTVDLVVRLGSLVVKLDFIVCGSLAALVILG
CDYCDRFEDAIRPRLKQVQLKDGSTIPIVRLPLRHASRKHVPFPAVQEPS
IAARESTKLRVSASVRILPESQVIGQVTSRQHDLGVIQPLPSLYEKSQPA
IAKGTVQVPCNAPLEVFVANVGRTPQYLVKTQVIGMVTPRPLAMLPTTLT
SADVLGLLQSLADTASAEFAPSKGEEGAATAVTVATEREDRTSGVEERTD
TSYDKLDPVMGLEELDLSHVPESHRERLRNMLRDFIPM*
back to top