Gvermi5440.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5440.t1
Unique NameGvermi5440.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length132
Homology
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BLAST of Gvermi5440.t1 vs. uniprot
Match: A0A2V3JCK7_9FLOR (Mediator of RNA polymerase II transcription subunit 21 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JCK7_9FLOR)

HSP 1 Score: 198 bits (504), Expect = 2.510e-63
Identity = 97/131 (74.05%), Postives = 119/131 (90.84%), Query Frame = 0 
Query:    1 MDDLSKLQKRIEELGVKFYEYLGVLQRDAPPIARAPDEKEELINDEAARNRLASQIPDFATDIVKCSSDIDALITVIDGKMKQQEGQERSLLDTANFESNQAGEEMVEAIDDAQKLLTSVRNLITARERES 131
            MDDLS+LQKR+E++GV FY YLG+LQRDAPP ARAPDEKEE+ NDEA+R +LA++IP+FA DI++C  +ID+LI  IDGKMKQQEG+ER+LL+TANFES QAG+EM EA+DDAQKLL+SVR+LITARERES
Sbjct:   11 MDDLSRLQKRVEDMGVMFYTYLGILQRDAPPTARAPDEKEEMANDEASRKQLANKIPEFAKDIIQCGREIDSLIDHIDGKMKQQEGRERTLLETANFESMQAGDEMEEAVDDAQKLLSSVRDLITARERES 141
The following BLAST results are available for this feature:
BLAST of Gvermi5440.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3JCK7_9FLOR2.510e-6374.05Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D6.10.280.10Mediator complex, subunit Med21coord: 1..127
e-value: 2.7E-17
score: 65.1
IPR021384Mediator complex, subunit Med21PFAMPF11221Med21coord: 1..126
e-value: 6.8E-13
score: 49.1
IPR021384Mediator complex, subunit Med21PANTHERPTHR13381RNA POLYMERASE II HOLOENZYME COMPONENT SRB7coord: 1..125
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 1..125

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2080239..2080634 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5440.t1Gvermi5440.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2080239..2080634 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5440.t1 ID=Gvermi5440.t1|Name=Gvermi5440.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=132bp
MDDLSKLQKRIEELGVKFYEYLGVLQRDAPPIARAPDEKEELINDEAARN
RLASQIPDFATDIVKCSSDIDALITVIDGKMKQQEGQERSLLDTANFESN
QAGEEMVEAIDDAQKLLTSVRNLITARERES*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021384Mediator_Med21
IPR037212Med7/Med21-like