Gvermi5436.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5436.t1
Unique NameGvermi5436.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length508
Homology
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A2V3IHF9_9FLOR (Double homeobox protein 4C n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IHF9_9FLOR)

HSP 1 Score: 386 bits (991), Expect = 2.050e-127
Identity = 223/343 (65.01%), Postives = 251/343 (73.18%), Query Frame = 0
Query:    1 LLVTASPTTPALSTXXXXXXXXXXXXXXPV-PVGLSAHSLPQPSHSKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRRKQDQKRRRSNTSPISLRSNASLPPHPVQQGLRSMRQSDLSAAPHDPNRPDWRSTLPATLVPNVPQCQQL------------------------PQPSLLQTPPAANLPYPFDPHQYYQYKQPQFLITPSQIPFSKAELMALQAVQTVVNCAPTPDALTRLAQLLNRPVEALRDWFRTVDNARMA 318
            LLVTASPTTPALSTXXXXXXXXXXXXXXP  PV L+A  LPQP+HSKWRVTP QKDVLLKAFD++PYP+L KKNALA QLGVTT QISKWFQHRREHLTRLGQFKAQYNRTRRTPEEL VLQAAF+A+RYP +ERLQQLAAQL  VTPKQIKLWFKHRRKQDQKR+R+N+SPISLRS+ASLP H     L SM   D+S++  DP R DWRS +P  LVPNV Q                            P  +L+Q PP   +PY FDPH YY Y +    I  SQ  FS+ E +ALQA   V+N  P PDA+ R+AQLLNRP +A+RDWFR  +N   A
Sbjct:   60 LLVTASPTTPALSTXXXXXXXXXXXXXXPANPVALTAQPLPQPTHSKWRVTPAQKDVLLKAFDEQPYPELLKKNALARQLGVTTPQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELDVLQAAFDAERYPNSERLQQLAAQLQGVTPKQIKLWFKHRRKQDQKRKRANSSPISLRSSASLPDHSAYPSLPSMHPPDVSSSSQDPMRSDWRSNIPTNLVPNVQQAPXXXXXXXXXXXXXXXXXXXXXXXXXXPHAALMQAPPTTAVPYTFDPHGYYPYTKSSQFIVASQSSFSRMEHLALQAAFAVLNATPPPDAIARIAQLLNRPYDAVRDWFRAQENCPTA 402          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A7S1EPD8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EPD8_9RHOD)

HSP 1 Score: 117 bits (293), Expect = 6.290e-26
Identity = 53/114 (46.49%), Postives = 80/114 (70.18%), Query Frame = 0
Query:   45 SKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRR 158
            ++W+ T  Q+ +L++ FD+EPYP +  K  LA ++GV   QI+KWFQHRRE L++ G+F+ Q  R RRTP+EL VLQ AF    YP+A+ +Q +  +L  ++  Q++LWFKH+R
Sbjct:   37 NRWKPTELQRSMLMEEFDKEPYPSVEYKGELASRIGVKRQQIAKWFQHRRESLSKAGKFEGQKQRDRRTPQELHVLQDAFNISPYPSADEIQNIVLKLPSLSEAQVRLWFKHKR 150          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A7S1EU41_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EU41_9RHOD)

HSP 1 Score: 120 bits (300), Expect = 2.550e-25
Identity = 62/137 (45.26%), Postives = 88/137 (64.23%), Query Frame = 0
Query:   43 SHSKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRRKQDQKRRRSNTSPISLRSNAS 179
            S ++W+ TP Q+  LLK F++ PYP++  K  LA  L +  AQISKWFQHRRE L + G+F  Q  R RRTPEEL +L++AF    YP  + +  L  +L ++ P+Q+KLWFKH+R    +  RS++   S RS +S
Sbjct:   14 SGARWKPTPAQRATLLKEFEENPYPEIETKLRLAQSLDLRHAQISKWFQHRREALVKKGRFSGQKRRDRRTPEELEILESAFAECAYPKTKDVDCLCTRLPDMQPQQVKLWFKHKRMSIARMIRSSSGRGSERSESS 150          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A7S1THT7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THT7_9RHOD)

HSP 1 Score: 103 bits (258), Expect = 2.850e-21
Identity = 53/115 (46.09%), Postives = 76/115 (66.09%), Query Frame = 0
Query:   45 SKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQF-KAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRR 158
            S+W+ T  +K +L ++++Q+PYP   +K  LA+QLGV   QISKWFQH+RE + + GQ  +A   + RRT EEL +L  AFE + YPT   + +L  ++  +T  Q KLWFKHRR
Sbjct:   55 SRWKPTMAEKVILSESYEQQPYPSPEEKLKLANQLGVKKKQISKWFQHKRESMAKAGQLPEAVKQKDRRTHEELEILLQAFEENPYPTTSDVDELVKKIGTMTVPQTKLWFKHRR 169          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A7S3A1E6_9RHOD (Hypothetical protein (Fragment) n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3A1E6_9RHOD)

HSP 1 Score: 107 bits (268), Expect = 2.880e-21
Identity = 59/127 (46.46%), Postives = 79/127 (62.20%), Query Frame = 0
Query:   34 LSAHSLPQPSH-SKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLH-EVTPKQIKLWFKHRR 158
            LS    P   H ++W+ +  QK  L+  F +  YPD   K  LA QL V  AQ+SKWFQH+RE L++LG F  Q  R RRT E+LAVLQ A +   YPTAE+++ +  +    +T KQ+KLWFKH+R
Sbjct:    9 LSGSGSPHKGHVTRWKPSEEQKGWLMGQFQENAYPDTDTKARLAAQLRVKRAQVSKWFQHKRESLSKLGHFNPQKQRERRTKEQLAVLQQALDRHPYPTAEQVEDVLRRTGGSMTAKQVKLWFKHKR 135          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A5J4Z290_PORPP (Double homeobox protein 4C n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z290_PORPP)

HSP 1 Score: 102 bits (253), Expect = 4.010e-19
Identity = 88/294 (29.93%), Postives = 126/294 (42.86%), Query Frame = 0
Query:   45 SKWRVTPTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRRKQDQKRRRSNTSPI---SLRSNASLPPHPVQQGLRSMRQSDLSAAPHDPNR-----PDWRSTLPATLVPNVPQCQQLPQ--PSLLQTPPAANLPYPFDPHQYYQYKQPQFLITPSQIPFSKAELMALQAVQTVVNCAPTPDALTRLAQLLNRPVEALRDWFRTVDNARMADSPAPAPVSH 328
            ++W+ T  QK  LL  F++  YP + +K A+A  L V   ++SKWFQHRRE L RLGQFK +    RRTP ELA L+A+F  + Y + + +  L   +  ++  QI+LWFKH+R+   K  +  ++     S R  +S+   P    + +      S     P R      D +  L   L     Q QQLP   P L           P D H+  Q + PQ         F   +LMALQ    + N +    +  RLA         +  W       R        P  H
Sbjct:  292 ARWKPTVEQKSYLLGEFEKNSYPSVEEKEAMADHLNVPRPRVSKWFQHRRESLVRLGQFKGESQPQRRTPAELAHLEASFANNPYSSRDEMAHLQEVIGTLSETQIRLWFKHKRRAMSKSGQKGSTASTYGSARGGSSVAGSPAPSPILAQGSERPSPNASPPLRGAGQAQDLQPQLQVHLNKQK-QAQQLPSYPPPLPMELSQKQAHSPHDQHRQ-QSRMPQAQYGVPMFHFHSDQLMALQGA-FIANPSMDVASERRLAHFFRMDPVQVSQWMTQERAVRSGSMVGFVPTGH 582          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A1Y2ECM4_9FUNG (Uncharacterized protein n=3 Tax=Neocallimastigaceae TaxID=29007 RepID=A0A1Y2ECM4_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 1.290e-7
Identity = 37/114 (32.46%), Postives = 66/114 (57.89%), Query Frame = 0
Query:   47 WRVT-PTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRRK 159
            WRV  P+++++L + ++  P P    K +LA +L V+   I +WF  RR     L +       +R+TPE+L++L+  F+   +PT E+ + LA   H ++ KQ+  WF+++RK
Sbjct:   10 WRVIGPSEENILERQYEYNPNPSSATKMSLALKLHVSPQNIGRWFSARRRREAGLARA------SRKTPEQLSLLEEFFKHTHFPTQEQKENLAHGTH-LSYKQVNSWFQNQRK 116          
BLAST of Gvermi5436.t1 vs. uniprot
Match: A0A1Y3MQN8_PIRSE (Uncharacterized protein n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3MQN8_PIRSE)

HSP 1 Score: 56.2 bits (134), Expect = 6.000e-6
Identity = 36/114 (31.58%), Postives = 64/114 (56.14%), Query Frame = 0
Query:   47 WRVT-PTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRLGQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQIKLWFKHRRK 159
            WRV  P ++++L   ++  P P    K +LA +L V+   I +WF  RR     L +       +R+TPE+L++L+  F+   +PT E+ + LA   + ++ KQ+  WF+++RK
Sbjct:   10 WRVIGPGEENILESQYEYNPNPSSATKMSLALKLHVSPQNIGRWFSARRRRDAGLARA------SRKTPEQLSLLEEFFKHTHFPTQEQKENLAHGTN-LSYKQVNSWFQNQRK 116          
The following BLAST results are available for this feature:
BLAST of Gvermi5436.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3IHF9_9FLOR2.050e-12765.01Double homeobox protein 4C n=1 Tax=Gracilariopsis ... [more]
A0A7S1EPD8_9RHOD6.290e-2646.49Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A7S1EU41_9RHOD2.550e-2545.26Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A7S1THT7_9RHOD2.850e-2146.09Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7S3A1E6_9RHOD2.880e-2146.46Hypothetical protein (Fragment) n=2 Tax=Rhodosorus... [more]
A0A5J4Z290_PORPP4.010e-1929.93Double homeobox protein 4C n=1 Tax=Porphyridium pu... [more]
A0A1Y2ECM4_9FUNG1.290e-732.46Uncharacterized protein n=3 Tax=Neocallimastigacea... [more]
A0A1Y3MQN8_PIRSE6.000e-631.58Uncharacterized protein n=1 Tax=Piromyces sp. (str... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001356Homeobox domainSMARTSM00389HOX_1coord: 42..104
e-value: 2.1E-8
score: 43.9
coord: 105..168
e-value: 2.0E-10
score: 50.7
IPR001356Homeobox domainPFAMPF00046Homeodomaincoord: 108..162
e-value: 4.5E-13
score: 48.9
coord: 45..94
e-value: 1.9E-12
score: 46.8
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 40..100
score: 13.426327
IPR001356Homeobox domainPROSITEPS50071HOMEOBOX_2coord: 103..164
score: 16.098553
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 109..155
e-value: 5.82151E-12
score: 58.7941
IPR001356Homeobox domainCDDcd00086homeodomaincoord: 50..94
e-value: 5.87869E-12
score: 58.7941
NoneNo IPR availableGENE3D1.10.10.60coord: 104..173
e-value: 3.1E-14
score: 54.2
NoneNo IPR availableGENE3D1.10.10.60coord: 38..103
e-value: 2.0E-14
score: 54.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..214
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 167..194
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 319..339
NoneNo IPR availablePANTHERPTHR24339:SF28INTERMEDIATE NEUROBLASTS DEFECTIVEcoord: 50..94
coord: 108..400
NoneNo IPR availablePANTHERPTHR24339HOMEOBOX PROTEIN EMX-RELATEDcoord: 50..94
coord: 108..400
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 108..166
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 38..98

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:2073110..2074633 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5436.t1Gvermi5436.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 2073110..2074633 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5436.t1 ID=Gvermi5436.t1|Name=Gvermi5436.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=508bp
LLVTASPTTPALSTSPAPPVVTFAPIPPPVPVGLSAHSLPQPSHSKWRVT
PTQKDVLLKAFDQEPYPDLHKKNALAHQLGVTTAQISKWFQHRREHLTRL
GQFKAQYNRTRRTPEELAVLQAAFEADRYPTAERLQQLAAQLHEVTPKQI
KLWFKHRRKQDQKRRRSNTSPISLRSNASLPPHPVQQGLRSMRQSDLSAA
PHDPNRPDWRSTLPATLVPNVPQCQQLPQPSLLQTPPAANLPYPFDPHQY
YQYKQPQFLITPSQIPFSKAELMALQAVQTVVNCAPTPDALTRLAQLLNR
PVEALRDWFRTVDNARMADSPAPAPVSHDSQQNALMQSPIMHDPEHAMRQ
SPVTKSSMLDHHTSPLHDLRKIDNDISMSEKSAKMVTEEMKAQNTREVES
QKEFSALDDKHSMDASLKAGMPRDGSTAQNSVVQSVGTGMYPTYVYPGSV
VDGGLMVQHQSAPFQQPQASPTPTLAPLRYMPTTSSASPYIAQNGVWYHT
APSLQPK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001356Homeobox_dom
IPR009057Homeobox-like_sf