Gvermi5365.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5365.t1
Unique NameGvermi5365.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length207
Homology
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BLAST of Gvermi5365.t1 vs. uniprot
Match: A0A2V3IYZ2_9FLOR (Non-structural maintenance of chromosomes element 1 homolog n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYZ2_9FLOR)

HSP 1 Score: 268 bits (686), Expect = 5.210e-88
Identity = 126/206 (61.17%), Postives = 164/206 (79.61%), Query Frame = 0 
Query:    1 MHDVDQSFVSGMMASKALSQQKAIELYNSCLSSSKEKRGVKIRDVDAFHRRMDKINKAISFFDLELKTIYSPWDQAQYWALVNTVDDDSVECATTFKGTGEKKMYFEIVDDLIEDLQNGGEGLLPHNYVQNLATTHGMSVSDGSQLLHRMNQLKWLKTVRGISGETFVAPGPRSLLELPQLRTLTIKLNMKGIKKFEDVVNPSASQ 206
            +H VDQSF++GMMA+KALSQQKAI+LYNSCL+++K  RG+KIRD  AF  R+DKINK +S  DL+ KTIYSPWD  QYW++ NTV+DD+ + AT F G  +KKM+FE+++++ ED+Q+GGEGLL  N VQNLA+++GM+V+DG Q LH++NQ KWLKTVR  SGE  +APGPRSLLELPQLRTL +K NM+  K+    + P  SQ
Sbjct:    3 LHVVDQSFIAGMMANKALSQQKAIDLYNSCLANTK--RGIKIRDASAFQHRIDKINKVLSLMDLQFKTIYSPWDNTQYWSVCNTVEDDATDTATVFNGINQKKMFFEVIEEIAEDIQSGGEGLLRFNDVQNLASSYGMTVADGGQFLHKLNQYKWLKTVRNRSGEAHIAPGPRSLLELPQLRTLALKKNMQTKKRRSQEITPPQSQ 206
The following BLAST results are available for this feature:
BLAST of Gvermi5365.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3IYZ2_9FLOR5.210e-8861.17Non-structural maintenance of chromosomes element ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.1150.220coord: 1..85
e-value: 4.1E-13
score: 51.3
NoneNo IPR availablePANTHERPTHR20973:SF0NON-STRUCTURAL MAINTENANCE OF CHROMOSOMES ELEMENT 1 HOMOLOGcoord: 2..181
IPR011513Non-structural maintenance of chromosomes element 1PFAMPF07574SMC_Nse1coord: 10..98
e-value: 1.1E-11
score: 45.0
IPR011513Non-structural maintenance of chromosomes element 1PANTHERPTHR20973NON-SMC ELEMENT 1-RELATEDcoord: 2..181

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1411616..1412295 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5365.t1Gvermi5365.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1411616..1412295 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5365.t1 ID=Gvermi5365.t1|Name=Gvermi5365.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=207bp
MHDVDQSFVSGMMASKALSQQKAIELYNSCLSSSKEKRGVKIRDVDAFHR
RMDKINKAISFFDLELKTIYSPWDQAQYWALVNTVDDDSVECATTFKGTG
EKKMYFEIVDDLIEDLQNGGEGLLPHNYVQNLATTHGMSVSDGSQLLHRM
NQLKWLKTVRGISGETFVAPGPRSLLELPQLRTLTIKLNMKGIKKFEDVV
NPSASQ*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011513Nse1