Gvermi5336.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5336.t1
Unique NameGvermi5336.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length628
Homology
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A2V3J6B5_9FLOR (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6B5_9FLOR)

HSP 1 Score: 319 bits (817), Expect = 1.410e-102
Identity = 164/207 (79.23%), Postives = 187/207 (90.34%), Query Frame = 0
Query:  423 MVLNHEGGNVPIRDRARDELRECRSLVSNLFVAQAEMFKSVPTGNEEGKYVK---RDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLGAMDLELEKGGESSEKAR 626
            MV ++   NVPIRDRARDELRECRSL+S+LFVAQA + KS+ T +++GK +K   RD T ESVQIMEKLV+QV+SFHSV+EQVLEHQRL+GIIEELRKANSVEDAKIAHLGANLRAAESVLQN+LD+A+PRLAAFKRANKRP+DVD+VI YGSKISASLSAP GWDPSQPLGN LPPAPTEEMMRAG+LGA+++E EKG E SEKAR
Sbjct:    1 MVQHNHASNVPIRDRARDELRECRSLISSLFVAQANLLKSISTASDDGKRIKDTKRDPTQESVQIMEKLVTQVKSFHSVMEQVLEHQRLHGIIEELRKANSVEDAKIAHLGANLRAAESVLQNSLDEAKPRLAAFKRANKRPIDVDEVISYGSKISASLSAPLGWDPSQPLGNFLPPAPTEEMMRAGKLGAVEMEEEKGAELSEKAR 207          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A2V3J675_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J675_9FLOR)

HSP 1 Score: 250 bits (638), Expect = 6.560e-72
Identity = 170/393 (43.26%), Postives = 214/393 (54.45%), Query Frame = 0
Query:   16 PHSFLPRKRRDHQPXXXXXXXXXXXXXXXXXXXXXXXSPPFSHSSANVTVADFVHAPPHRFADDSFPPEHKLTQPPPFDLFIA---AQRNSRHADSPTTVVTKPQYFGAVPYAPQPDAADQSSSDESAESIDSNVYVIDNSHHLSNLLNIV---APPKHXXXXXXXXXXXXXXSTPRRSFRVVPHSALPA--TAHISSDDTDLHEGHLEHLRFEDASSDQSASLSPELASERDEVSSTSITNMQPIFRPCAQFAHSHHLLPAPRLNE----RAKSETSTSSKSSIHPLS-ADACTVGLVESSDDLFRCASRCHSPLIRRVESWYSADDALHPGRNLLCQNPPSPAKYTFKPAHRRSSPHVSSPSSRLSLHAAVRTFSAQRHTEPINPQLSAQQ 395
            PH F  RKRR H P                        PP+SH    V+VADFV  P  RFA+ +  P   + +PP +DLF A   A+ N +H+ +P+ VVT P++FGA+PY         S+SD +++S+DS VY IDN+ H+S LL I+     P H               TP +S       ++ +  T    SD+TDL+EGHLEH RF+DAS D     S E  SERDEVSSTSITN +P  +      +S  L    RL       A S +S  S SSI P S +D CTV  VESSD +FR  SRC SPLI  VES+YS  +A    RNL+CQNP SP KYTFKP    SSP VS   SR +    V  F+A+RHTEPI+P+LS  Q
Sbjct:    7 PHPFHARKRRSHPPLSSPSHHSERQPPIEYR-------PPYSH----VSVADFVDVPSQRFAERALSPTDNVKRPPSYDLFRAKQAARNNQKHSQTPSAVVTNPRHFGALPYVTAHPDNTGSTSDSASDSLDSTVYYIDNNSHVSALLAIINSATQPNHRHSLPNIPPSFQQSCTPHQSNISTSDKSVSSRPTDEPPSDETDLYEGHLEHARFQDASDDDHQLRSKERISERDEVSSTSITNFEPYSQSTHPLHNSQPLAAERRLRYSHLGHATSASSLLSDSSIRPASLSDVCTVRSVESSDGIFRAHSRCSSPLITPVESFYSVHEAFQKSRNLMCQNPVSPTKYTFKPPQTPSSPSVSPAHSRHT----VPLFTAERHTEPISPKLSTPQ 384          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A7S0BGG5_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BGG5_9RHOD)

HSP 1 Score: 119 bits (297), Expect = 2.580e-27
Identity = 72/186 (38.71%), Postives = 109/186 (58.60%), Query Frame = 0
Query:  432 VPIRDRARDELRECRSLVSNLFVAQAEMFKSVPTGNEEGKYVKRDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLGAMDLELEK 617
            +P RDRAR ELRE  SLV  L     + F    +G   G+ V      +  +I ++L+ + +   S+++++++HQ +N +IE++R +   E+ K+  LG  LR AE  LQ    D   R+AA + A K  V+V D++   +KI +S +AP  W P++PLGN LPPAP EEMMR+G LG +   L K
Sbjct:    7 IPARDRARVELREFESLVRLLI----QYFDLSASGRMPGEDVL-----QPDRIAQELIERQKVLRSIVDELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLRGAELCLQGPDIDHEARIAALEGAKK--VNVKDIVELAAKIGSSYAAPPNWTPTEPLGNHLPPAPPEEMMRSGHLGKVCTGLPK 181          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A7S2ZT46_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZT46_9RHOD)

HSP 1 Score: 118 bits (295), Expect = 2.950e-26
Identity = 72/186 (38.71%), Postives = 109/186 (58.60%), Query Frame = 0
Query:  432 VPIRDRARDELRECRSLVSNLFVAQAEMFKSVPTGNEEGKYVKRDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLGAMDLELEK 617
            +P RDRAR ELRE  SLV  L +   ++  S       G+    D+     +I ++L+ + +   S+  ++++HQ +N +IE++R +   E+ K+  LG  LR AE  LQ    D   R+AA + A K  V+V D++   +KI +S SAP  W P++PLGN LPPAPTEEMMR+G LG + ++  K
Sbjct:    7 IPARDRARVELREIESLV-RLLIQYFDLSAS-------GRMPSEDVLQPD-RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLGKVRMDPPK 181          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A7S2ZU48_9RHOD (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZU48_9RHOD)

HSP 1 Score: 102 bits (254), Expect = 7.640e-22
Identity = 54/127 (42.52%), Postives = 82/127 (64.57%), Query Frame = 0
Query:  483 QIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLG 609
            +I ++L+ + +   S+  ++++HQ +N +IE++R +   E+ K+  LG  LR AE  LQ    D   R+AA + A K  V+V D++   +KI +S SAP  W P++PLGN LPPAPTEEMMR+G LG
Sbjct:   20 RIAQELIERQKVLRSIAGELVQHQNMNKLIEKVRASLQREEQKLVQLGGTLREAELRLQGPDMDHEARIAALEGAKK--VNVKDIVELAAKIGSSYSAPPNWTPTEPLGNRLPPAPTEEMMRSGHLG 144          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A1X6P309_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P309_PORUM)

HSP 1 Score: 99.0 bits (245), Expect = 5.110e-18
Identity = 63/181 (34.81%), Postives = 87/181 (48.07%), Query Frame = 0
Query:  431 NVPIRDRARDELRECRSLVSNLFVAQAEMFKSVPTGNEEGKYVKRDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLGAM 611
            +VP+RDRAR  LRECRSLV+ LF A   +          G  +  +   +  Q+ME             +++ EHQR    I  L                         Q ALD ARPRL A   +  RP+ V  +I  G++++ +++AP GW P QPLG S+PPA T+E M  GRL A+
Sbjct:  101 SVPVRDRARTVLRECRSLVARLFEAVDALV---------GGRMSSEAVMQPEQVMEAXXXXXXXXXXXXDELTEHQRTAATIARLTAXXXXXXXXXXXXXXXXXXXXXXXQGALDAARPRLVAAAASAARPLPVPALIAAGARLAPAIAAPPGWAPPQPLGGSVPPAVTDEAMWGGRLAAL 272          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A1B6DGF2_9HEMI (Mediator of RNA polymerase II transcription subunit 4 n=1 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DGF2_9HEMI)

HSP 1 Score: 69.7 bits (169), Expect = 1.520e-9
Identity = 47/135 (34.81%), Postives = 69/135 (51.11%), Query Frame = 0
Query:  480 ESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISAS--LSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLGAMD 612
            E + + E LVS+      ++    E  ++N  ++ L+     +D  I  L   L+ AE VL  A+  AR +L A  RANKRPV  +++I +  +ISAS  + AP  W P  P      P PT+  MR G LG M+
Sbjct:   44 EQLHLTELLVSKDNELKEMLNLASEQAKINQKMDILKAEVEQQDQDIQQLQRQLKEAEQVLATAIFQARQKLQAINRANKRPVPSEELIKFAHRISASNAVCAPLTWQPGDPRR----PYPTDIEMRLGFLGRMN 174          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A444SYH5_ARMVU (Mediator of RNA polymerase II transcription subunit 4 n=2 Tax=Armadillidium TaxID=13346 RepID=A0A444SYH5_ARMVU)

HSP 1 Score: 64.3 bits (155), Expect = 7.630e-8
Identity = 44/138 (31.88%), Postives = 71/138 (51.45%), Query Frame = 0
Query:  474 KRDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISA--SLSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLG 609
            +R  +NE  Q+++ L+++ +     ++   E   + GI+E ++      +  I  L   L  A   L  AL  AR +L +  RANKRPV+ +++I Y  +IS+  S++AP  W    P      P PT+  MRAG LG
Sbjct:   34 QRLSSNEQTQLIQLLLTKDEELKETMKVAGEQAVVAGIMESVQAEVDKHEMMIVQLEKQLYEAAHTLSVALYQARQKLDSISRANKRPVNSEELIKYAHRISSTYSVAAPTNWQQGDPRR----PYPTDHEMRAGFLG 167          
BLAST of Gvermi5336.t1 vs. uniprot
Match: A0A423SZI8_PENVA (Mediator of RNA polymerase II transcription subunit 4 n=6 Tax=Penaeus TaxID=133894 RepID=A0A423SZI8_PENVA)

HSP 1 Score: 61.6 bits (148), Expect = 6.860e-7
Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 0
Query:  474 KRDMTNESVQIMEKLVSQVQSFHSVIEQVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPRLAAFKRANKRPVDVDDVIGYGSKISAS--LSAPAGWDPSQPLGNSLPPAPTEEMMRAGRLG 609
            +R   ++  Q++E L+ +       I+   +  R+  I+E ++      D  I  L   L  A   L  AL  AR +L +  RANKRPV+ +++I Y  +IS++  +SAP  W    P      P PT+  MRAG LG
Sbjct:   34 QRLSAHDQAQLIELLIHKDTELKETIKLASDQARIAEIMETVQAEVDRHDQMILQLEKQLHDAHHTLSVALYQARQKLQSIARANKRPVNSEELIKYAHRISSTYAVSAPDNWQQGDPRR----PYPTDLEMRAGYLG 167          
The following BLAST results are available for this feature:
BLAST of Gvermi5336.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A2V3J6B5_9FLOR1.410e-10279.23Mediator of RNA polymerase II transcription subuni... [more]
A0A2V3J675_9FLOR6.560e-7243.26Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A7S0BGG5_9RHOD2.580e-2738.71Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZT46_9RHOD2.950e-2638.71Mediator of RNA polymerase II transcription subuni... [more]
A0A7S2ZU48_9RHOD7.640e-2242.52Mediator of RNA polymerase II transcription subuni... [more]
A0A1X6P309_PORUM5.110e-1834.81Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DGF2_9HEMI1.520e-934.81Mediator of RNA polymerase II transcription subuni... [more]
A0A444SYH5_ARMVU7.630e-831.88Mediator of RNA polymerase II transcription subuni... [more]
A0A423SZI8_PENVA6.860e-731.88Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019258Mediator complex, subunit Med4PFAMPF10018Med4coord: 483..618
e-value: 4.8E-18
score: 65.5
IPR019258Mediator complex, subunit Med4PANTHERPTHR13208MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4coord: 432..622
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 585..627
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 170..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 610..627
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..109
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 224..240
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..146
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 205..223
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:1291710..1295083 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5336.t1Gvermi5336.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 1291710..1295083 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5336.t1 ID=Gvermi5336.t1|Name=Gvermi5336.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=628bp
MHFFTPPSSMPRRPRPHSFLPRKRRDHQPQPHPPPQPQPKPHHSPSPEAP
PPSPPFSHSSANVTVADFVHAPPHRFADDSFPPEHKLTQPPPFDLFIAAQ
RNSRHADSPTTVVTKPQYFGAVPYAPQPDAADQSSSDESAESIDSNVYVI
DNSHHLSNLLNIVAPPKHHCEEAAAPSGSPPPSTPRRSFRVVPHSALPAT
AHISSDDTDLHEGHLEHLRFEDASSDQSASLSPELASERDEVSSTSITNM
QPIFRPCAQFAHSHHLLPAPRLNERAKSETSTSSKSSIHPLSADACTVGL
VESSDDLFRCASRCHSPLIRRVESWYSADDALHPGRNLLCQNPPSPAKYT
FKPAHRRSSPHVSSPSSRLSLHAAVRTFSAQRHTEPINPQLSAQQPWTLL
IPELSSALLNHNHSLLRRLDYFMVLNHEGGNVPIRDRARDELRECRSLVS
NLFVAQAEMFKSVPTGNEEGKYVKRDMTNESVQIMEKLVSQVQSFHSVIE
QVLEHQRLNGIIEELRKANSVEDAKIAHLGANLRAAESVLQNALDDARPR
LAAFKRANKRPVDVDDVIGYGSKISASLSAPAGWDPSQPLGNSLPPAPTE
EMMRAGRLGAMDLELEKGGESSEKARA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019258Mediator_Med4