Gvermi5328.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5328.t1
Unique Name	Gvermi5328.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	277

Homology

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BLAST of Gvermi5328.t1 vs. uniprot
Match: A0A2V3J7R1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J7R1_9FLOR)

HSP 1 Score: 449 bits (1156), Expect = 4.100e-158
Identity = 228/276 (82.61%), Postives = 247/276 (89.49%), Query Frame = 0

Query:    1 MPTPAVPGYRQSYIEKDRCVRNSTAVKIPGVDVMQGFTLSKAEFEDLFLQTAENVDDASHPRADSRQKPRFRRKPPRRSPDPSDNDPESNPSLRPFRAAAKPSEPAIHSAEEAADYADLCRKHAVSLQRCLPPDYDGAGEFFEKAVDARAKHGLFCSSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMMNARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRRNKLSDDNVRVAIDGLSNNLRAQERPDEVDVVVKRHFLGALD 276
            MPT AVP YRQSYIEKDRCVRNSTAVKIPGVD+MQGFTLSK EFE+LFLQTA+NVDDA+ P    +Q+ RFRRKP R++   ++   ++NPS RPFRAAAK  EP I ++EEA DYADLCRKHA SLQRCLPPDY+GAGEFFEKAVDARAKHGLFC+ DNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRM++ARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYR+NKLSDDNVRV ID LSNNLRAQ R DEVD VVKRHFLGALD
Sbjct:    1 MPTAAVPAYRQSYIEKDRCVRNSTAVKIPGVDMMQGFTLSKTEFENLFLQTADNVDDATRPNPHQKQQ-RFRRKPQRKTTPLNETKTDTNPSSRPFRAAAKVVEPTISNSEEAIDYADLCRKHAASLQRCLPPDYEGAGEFFEKAVDARAKHGLFCTPDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMLDARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRKNKLSDDNVRVGIDSLSNNLRAQGRADEVDTVVKRHFLGALD 275

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BLAST of Gvermi5328.t1 vs. uniprot
Match: A0A2V3IN04_9FLOR (AMPK1_CBM domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IN04_9FLOR)

HSP 1 Score: 123 bits (309), Expect = 1.710e-28
Identity = 70/156 (44.87%), Postives = 92/156 (58.97%), Query Frame = 0

Query:  111 EEAADYADLCRKHAVSLQRCLPPDYDGAGEFFEKAVDARAKHGLFCSSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMMNARSARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRRNKLSDDNVRVAIDGLSNNLRAQERPDEVDVV 266
            +E    AD  R+ A  LQ  L  D  GA E F KA+  R KHGL+C+S NA  HV+ A+NLSK     +AE HLR    IY  ++A       D++LY+ VV+DRQ R AEAE  YR AL +Y+ N +  +NV +A+  LS NLR Q R  E++ V
Sbjct:  359 DEVNRQADNWRQMARHLQDDLC-DPTGARELFNKAIQHREKHGLWCTSQNAQVHVDLARNLSKADRMKDAELHLRLTLKIYNKIDA-GKEHVADLMLYVGVVVDRQKRRAEAEELYRKALNIYKENDIRSNNVEIAVKNLSLNLRKQNREHEIEAV 512

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BLAST of Gvermi5328.t1 vs. uniprot
Match: A0A7S0BLI2_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BLI2_9RHOD)

HSP 1 Score: 59.3 bits (142), Expect = 2.370e-6
Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 0

Query:  138 AGEFFEKAVDARAKHGLFCSSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMMNARS----------ARKYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYR 234
            A E   +A  AR ++G + +    +  +E A  L K     EAEY+LR A  ++ M ++               + DVL  + +V D+ GR  EAE +YRSAL +YR
Sbjct:  427 AVELLRRATFARRRYGAWVTPFTIEFLLEIANMLVKMDQYDEAEYNLRQAMSVWHMKSSAKDLLPEGEKWREETFADVLKMLGIVCDKAGRRLEAEEYYRSALEIYR 533

The following BLAST results are available for this feature:

BLAST of Gvermi5328.t1 vs. uniprot

BLAST of Gvermi5328.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3


Match Name	E-value	Identity	Description
A0A2V3J7R1_9FLOR	4.100e-158	82.61	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IN04_9FLOR	1.710e-28	44.87	AMPK1_CBM domain-containing protein n=1 Tax=Gracil...	[more]
A0A7S0BLI2_9RHOD	2.370e-6	32.71	Hypothetical protein n=1 Tax=Rhodosorus marinus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 133..274 e-value: 3.7E-14 score: 54.5
IPR011990	Tetratricopeptide-like helical domain superfamily	SUPERFAMILY	48452	TPR-like	coord: 117..237
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..108

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:1251462..1252292 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5328.t1	Gvermi5328.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24228 1251462..1252292 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5328.t1 ID=Gvermi5328.t1|Name=Gvermi5328.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=277bp
MPTPAVPGYRQSYIEKDRCVRNSTAVKIPGVDVMQGFTLSKAEFEDLFLQ
TAENVDDASHPRADSRQKPRFRRKPPRRSPDPSDNDPESNPSLRPFRAAA
KPSEPAIHSAEEAADYADLCRKHAVSLQRCLPPDYDGAGEFFEKAVDARA
KHGLFCSSDNADAHVEYAQNLSKRGLTPEAEYHLRSAADIYRMMNARSAR
KYGDVLLYMAVVIDRQGRLAEAENFYRSALAVYRRNKLSDDNVRVAIDGL
SNNLRAQERPDEVDVVVKRHFLGALD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf