Gvermi5306.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi5306.t1
Unique Name	Gvermi5306.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	480

Homology

[Close]

BLAST of Gvermi5306.t1 vs. uniprot
Match: A0A2V3J6I4_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6I4_9FLOR)

HSP 1 Score: 380 bits (975), Expect = 6.560e-125
Identity = 193/405 (47.65%), Postives = 268/405 (66.17%), Query Frame = 0

Query:   11 IPGFRYDASRKRYFKMQPGEAKQSQNLKANLDRPRKRMKSSSHINM---GHRPCLYRYLKNIETNHSQPSIPAVNSFLLSAGLRTCFMDLAGEKLRYKMQVGLRHRKKINNYYNQLASTETRKVLWDMDQVNTFLEVRRNLRSVTLRAHLYPIGGSDWKLGMPEGTEINTCSTNGSWVVIGSLVGRCYQVCSLRVSDIEIHLERPHYIPIGRRFSATVAISNEGLPALAIQRSVFLLQTDPEYHLPQEPKRLFNVSGKLPIDNLKVFEERIVGSIFNGKVFVYDMMSA-SPLWESKGGTRVVDLQSCDGGKTVFVSSMLNTRLNLVCWDTRIPYSRAPPMRFEGHRNSHKQLRFHVDTSYACGVLAAGGDDGFVRLWDARMAALPLKSLNVEGEIPEVVKLAGFR 411
            IPG+RYD    RYFK+QPG   +S +L    DRP KR      ++    G    L+RY+ N+E + + PS   +N  LL++  R  F ++  +     + + +  RKKI  +Y  LA  +  K LWD+++VN+F+EVR    S+ +  HLYPIGG+   L   E  +  TC T+G+W+ +GS  G  YQV   R++  ++  E+   + + R F+  +AIS++GLPALA+ + V++L T+     P+ P+ +FNV G   IDNLK F  RI GS++NGK+F+YD+ S  SP+WES+G TRV D+QSCDGGK ++ SSMLN   NL+CWDTR+ Y+  P +RFEGHRNSHK+LRFHVDT+YACG+LAAGGDDG VRLWDAR A LPL S++++GEIPE VKL GFR
Sbjct:   18 IPGYRYDRKLNRYFKLQPGCTDKSPSLH---DRPCKRTVKRRRLSQEPTGIGTSLHRYITNVEEDKTPPSRVGLNCRLLASSPRASFDEIDYDT--NDLDISIEQRKKIYGHYQSLAERDKPKSLWDINEVNSFVEVREKATSLQINFHLYPIGGA---LATFEPCKAQTCVTHGAWIALGSDSGMFYQVSKFRITQCDLEEEQRLLLYLRRPFAGRMAISSDGLPALAVNKKVYILDTELGQLAPRAPRPVFNVVGLSAIDNLKFFGTRIAGSLWNGKLFMYDIASPRSPIWESRGNTRVADMQSCDGGKILYTSSMLNYAQNLLCWDTRLSYALTPVLRFEGHRNSHKRLRFHVDTNYACGILAAGGDDGIVRLWDARKAELPLSSIDLKGEIPEAVKLVGFR 414

[Close]

BLAST of Gvermi5306.t1 vs. uniprot
Match: R7QDC6_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QDC6_CHOCR)

HSP 1 Score: 96.7 bits (239), Expect = 1.970e-18
Identity = 50/134 (37.31%), Postives = 74/134 (55.22%), Query Frame = 0

Query:  285 GKVFVYDMMS-----ASPLWESKGGTRVVDLQSCDGGKTVFVSSMLNTRLNLVCWDTRIPYSRAPPMRFEGHRNSHKQLRFHVDTSYACGVLAAGGDDGFVRLWDARMAALPLKSLNVEGEIPEVVKLAGFRAE 413
            G ++++D+ +     A     SK  + V DL+    G  ++VS M N   NL  WD R  YS  P + F GHRNSHK L+F ++ +   G+L AGGDD  VR W+   +   ++   + GEIP++VK AG+  E
Sbjct:  177 GNIYIWDVRTRPHRPACSFRPSKKHSAVTDLKLSTDGNYLYVSCMRNKSNNLAKWDLR-KYSSEPAVVFNGHRNSHKSLKFDIEETTTGGILLAGGDDSVVRAWNTHTSGTGVECARLPGEIPKLVKFAGWGKE 309

The following BLAST results are available for this feature:

BLAST of Gvermi5306.t1 vs. uniprot

BLAST of Gvermi5306.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3J6I4_9FLOR	6.560e-125	47.65	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
R7QDC6_CHOCR	1.970e-18	37.31	Uncharacterized protein n=1 Tax=Chondrus crispus T...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 238..402 e-value: 1.1E-10 score: 43.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..47
None	No IPR available	PANTHER	PTHR44472	DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED	coord: 284..394 coord: 5..46
IPR001680	WD40 repeat	PROSITE	PS50082	WD_REPEATS_2	coord: 348..384 score: 9.238559
IPR036322	WD40-repeat-containing domain superfamily	SUPERFAMILY	50978	WD40 repeat-like	coord: 149..386

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_24228	contig	ScGOVlb_24228:1153406..1155105 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi5306.t1	Gvermi5306.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_24228 1153406..1155105 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi5306.t1 ID=Gvermi5306.t1|Name=Gvermi5306.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=480bp
MENSSDIMPEIPGFRYDASRKRYFKMQPGEAKQSQNLKANLDRPRKRMKS
SSHINMGHRPCLYRYLKNIETNHSQPSIPAVNSFLLSAGLRTCFMDLAGE
KLRYKMQVGLRHRKKINNYYNQLASTETRKVLWDMDQVNTFLEVRRNLRS
VTLRAHLYPIGGSDWKLGMPEGTEINTCSTNGSWVVIGSLVGRCYQVCSL
RVSDIEIHLERPHYIPIGRRFSATVAISNEGLPALAIQRSVFLLQTDPEY
HLPQEPKRLFNVSGKLPIDNLKVFEERIVGSIFNGKVFVYDMMSASPLWE
SKGGTRVVDLQSCDGGKTVFVSSMLNTRLNLVCWDTRIPYSRAPPMRFEG
HRNSHKQLRFHVDTSYACGVLAAGGDDGFVRLWDARMAALPLKSLNVEGE
IPEVVKLAGFRAEMRLLLRTPPFVWNHICHDILPEFCVCIPNIEIKVNYN
GFDCFRVLPGTFSALNSSHSKDLKLRSFA*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom_sf
IPR001680	WD40_repeat
IPR036322	WD40_repeat_dom_sf