Gvermi5277.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5277.t1
Unique NameGvermi5277.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length252
Homology
BLAST of Gvermi5277.t1 vs. uniprot
Match: R7QN04_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QN04_CHOCR)

HSP 1 Score: 94.4 bits (233), Expect = 2.420e-18
Identity = 69/226 (30.53%), Postives = 107/226 (47.35%), Query Frame = 0
Query:   28 TAAQGKRSILKRYENALSLAKKRLNASQRRYKQDFNRKVMEGPHLKEGDKGFLDKPGK-------------TSGEPPDLTRKLVSATSGPYKVLATYRDTVAIEVNGLKEVVSRNRMMKVLTPSPSGMPATSSQRQRMKLPHQTTSGVKTPLDKGKRITGLVEPLLEAPDAIMTPEGDILYAVDHIVSHRQTPARVLSHVRWYGYKSKNDTEEPPGHIPENFLRRY 240
            T  Q KR+ L++  +AL  A+ +L+ASQ+RYK DF++KV   P +  GD  ++D+P +             T+G   +L+ KL+  T GP++V +    TV IE +G++  VS +R+ K+                              P   G  +   +    +A     TP  +  Y VD IV HR T   +   VRWYGY + +DT EP   +P+ F+ RY
Sbjct:  585 TPVQYKRATLRKLRDALDRARTKLSASQKRYKDDFDKKVRFRPVVVAGDFVYVDRPPRPLTSVERRTRAQGTTGT-DELSVKLLPKTEGPFRVRSATDTTVLIEQDGVENRVSIDRVTKM------------------------------PRGPGDTVASAIPSASDAQTT--TPRAE--YVVDRIVGHRMTRGGIEYKVRWYGYAASDDTYEPSEGLPQPFIDRY 775          
BLAST of Gvermi5277.t1 vs. uniprot
Match: R7Q4X3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q4X3_CHOCR)

HSP 1 Score: 92.0 bits (227), Expect = 1.040e-17
Identity = 67/218 (30.73%), Postives = 102/218 (46.79%), Query Frame = 0
Query:   24 PQAP-TAAQGKRSILKRYENALSLAKKRLNASQRRYKQDFNRKVMEGPHLKEGDKGFLDKPGKTSGEPPDLTRKLVSATSGPYKVLATYRDTVAIEVNGLKEVVSRNRMMKVLTPSPSGMPATSSQRQRMKLPHQTTSGVKTPLDKGKRITGLVEPLLEAPDAIMTPEGDILYAVDHIVSHRQTPARVLSHVRWYGYKSKNDTEEPPGHIPENFLRRY 240
            P+ P T  Q KR+ L++  +AL  A+ +L+ASQ+RYK DF++KV   P +  GD  ++D+P +    P     +   A  GP++V +    TV IE +G++  VS +R+ K+                              P   G  +   +    +A     TP  +  Y VD IV HR T       VRWYGY + +DT EP   +P+ F+ RY
Sbjct:  281 PEDPRTPVQYKRATLRKLRDALDRARTKLSASQKRYKDDFDKKVRFRPVVVAGDFVYVDRPPR----PLTSVERRTRAQEGPFRVRSATDTTVLIEQDGVENRVSIDRVTKM------------------------------PRGPGDTVASAIPSASDAQTT--TPRAE--YVVDRIVGHRMTRGGTEYKVRWYGYAASDDTYEPSEGLPQPFIDRY 460          
BLAST of Gvermi5277.t1 vs. uniprot
Match: R7QU67_CHOCR (Integrase catalytic domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QU67_CHOCR)

HSP 1 Score: 77.0 bits (188), Expect = 1.150e-12
Identity = 61/211 (28.91%), Postives = 100/211 (47.39%), Query Frame = 0
Query:   28 TAAQGKRSILKRYENALSLAKKRLNASQRRYKQDFNRKVMEGPHLKEGDKGFLDKP-------------GKTSGEPPDLTRKLVSATSGPYKVLATYRDTVAIEVNGLKEVVSRNRMMKVLTPSPSGMPATSSQRQRMKLPHQTTSGVKTPLDKGKRITGLVEPLLEAPDAIMTPEGDILYAVDHIVSHRQTPARVLSHVRWYGYKSKNDT 225
            T  Q KR+ L++  + L  A+ ++ A+Q+RYK++F++KV   P ++EGD+ ++D+P             G+  G   D++ KL+  T GP++V      TV +E + L   VS +R+ +        MP     R         T G+  P ++     G         D   TPE    + V+ +V+HR  P  +   VRWYGY   +DT
Sbjct:  187 TPVQYKRATLRKLRDVLDRARVKMTAAQKRYKENFDKKVRFRPVIQEGDQVYVDRPPPALRAAERRGRDGQGLGT-DDMSVKLLPKTEGPFRVRKATDTTVTVEQDRLPVPVSIDRVTR--------MPRGLGDRT------MPTEGISAPSERINPPHG---------DGANTPEE---FVVELLVAHRDIPTGLEYKVRWYGYIPADDT 370          
The following BLAST results are available for this feature:
BLAST of Gvermi5277.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
R7QN04_CHOCR2.420e-1830.53Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7Q4X3_CHOCR1.040e-1730.73Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
R7QU67_CHOCR1.150e-1228.91Integrase catalytic domain-containing protein n=1 ... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..57
NoneNo IPR availableGENE3D2.40.50.40coord: 191..247
e-value: 1.6E-5
score: 26.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 68..83
NoneNo IPR availableCDDcd00024CD_CSDcoord: 195..232
e-value: 1.71075E-6
score: 42.0789
IPR016197Chromo-like domain superfamilySUPERFAMILY54160Chromo domain-likecoord: 182..243

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:903181..903936 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5277.t1Gvermi5277.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 903181..903936 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5277.t1 ID=Gvermi5277.t1|Name=Gvermi5277.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=252bp
LVLFRISPSAVIEERATAHPANGPQAPTAAQGKRSILKRYENALSLAKKR
LNASQRRYKQDFNRKVMEGPHLKEGDKGFLDKPGKTSGEPPDLTRKLVSA
TSGPYKVLATYRDTVAIEVNGLKEVVSRNRMMKVLTPSPSGMPATSSQRQ
RMKLPHQTTSGVKTPLDKGKRITGLVEPLLEAPDAIMTPEGDILYAVDHI
VSHRQTPARVLSHVRWYGYKSKNDTEEPPGHIPENFLRRYHTNLVRKRLS
A*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016197Chromo-like_dom_sf