Gvermi5261.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5261.t1
Unique NameGvermi5261.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length184
Homology
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A2V3JCC8_9FLOR (U3 small nucleolar ribonucleoprotein imp3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3JCC8_9FLOR)

HSP 1 Score: 336 bits (861), Expect = 3.320e-116
Identity = 165/183 (90.16%), Postives = 176/183 (96.17%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA 183
            MRKLKYHEYKLLRKADFLKWKRE NLREVKVARRYHLSNP+EYH+YSKIVGD+KQLC+KIQELK DDP+R+QRT+DL+TKLYDMGII +KS L ECSKVTVSAICRRRLPVVMKRLKFAE LTEA TLIEQGHIRIGPTQVKDPAML+TR+MEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA
Sbjct:    1 MRKLKYHEYKLLRKADFLKWKRERNLREVKVARRYHLSNPEEYHQYSKIVGDVKQLCAKIQELKPDDPVRIQRTDDLMTKLYDMGIISLKSGLEECSKVTVSAICRRRLPVVMKRLKFAETLTEATTLIEQGHIRIGPTQVKDPAMLITRSMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA 183          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A7S1TED8_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TED8_9RHOD)

HSP 1 Score: 249 bits (635), Expect = 8.640e-82
Identity = 116/181 (64.09%), Postives = 153/181 (84.53%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MRKLK+HEYKLL+K DFL+WK+E +LRE  V +RY + NP++YH+Y+K+VG I  L +K+++L   D +RV+RTE LL K+YDMG+I +K +L +C+K++VS+ CRRRLPVVM RL+FAENL EAV+LIEQGH+RIGPT V+DPA+LVTR MEDF+TW +TSKIKRK+ +FND LDD+DLL
Sbjct:    1 MRKLKFHEYKLLKKVDFLQWKKEKSLREYGVRKRYRIQNPEDYHKYNKLVGLITSLANKLKQLDPADALRVERTEQLLVKMYDMGLITVKKNLEQCAKLSVSSFCRRRLPVVMVRLRFAENLLEAVSLIEQGHVRIGPTLVRDPALLVTRTMEDFITWSNTSKIKRKILKFNDKLDDFDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: M2XX62_GALSU (RNA-binding protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XX62_GALSU)

HSP 1 Score: 247 bits (631), Expect = 3.390e-81
Identity = 118/181 (65.19%), Postives = 147/181 (81.22%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR LKYHE+KLL+KADFL+WK+E NL E ++ RRY +  P++YH+Y+K+ G IK+L  KI+EL   D  RV+ T+ LL KLY+MGIIP+K SL +C+K+TVS+ CRRRL VV+ RLK+AENL EA T +EQGHIRIGP QV DPA+LVTRNMEDF+TW D SKIKRK+ Q+ND LDDYDLL
Sbjct:    1 MRVLKYHEFKLLKKADFLQWKKERNLHETRIIRRYRIQRPEDYHQYNKLCGRIKKLAEKIKELDPSDKKRVEYTDILLEKLYEMGIIPLKRSLEQCAKITVSSFCRRRLAVVLVRLKYAENLKEATTFVEQGHIRIGPHQVTDPALLVTRNMEDFITWTDHSKIKRKILQYNDQLDDYDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A0L0SML7_ALLM3 (Ribosomal protein S4 n=2 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0SML7_ALLM3)

HSP 1 Score: 238 bits (607), Expect = 1.580e-77
Identity = 110/181 (60.77%), Postives = 144/181 (79.56%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            +R+LK+HE KLL+K DFL+WK ENNLRE++V RRYH+   ++Y +Y+++ G I+QL  +I  L A DP +  +T+ LLTKLY+MG +P K +L +C K+TVSA+CRRRLP+VM RLK AE + EAVT +EQGHIR+GP  V DPA LVTRN EDF+TWVDTSKIKRK+ ++ND LDD+DLL
Sbjct:    2 VRQLKHHEQKLLKKVDFLQWKNENNLREIQVMRRYHIQKREDYTKYNRLCGQIRQLAHRISLLDARDPFKAHKTDALLTKLYNMGFLPTKKALSQCEKITVSAVCRRRLPIVMVRLKMAETVREAVTFVEQGHIRVGPQVVTDPAFLVTRNFEDFITWVDTSKIKRKIMKYNDKLDDFDLL 182          
BLAST of Gvermi5261.t1 vs. uniprot
Match: L1JBM1_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JBM1_GUITC)

HSP 1 Score: 235 bits (600), Expect = 1.890e-76
Identity = 112/183 (61.20%), Postives = 146/183 (79.78%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA 183
            MR+LKYHE KLL+K +F +WK + N+RE+++ RRY + N D+YH+Y+KI G I +L SK++EL+ DDP RV+ TE L+ KLY+MG+I  K SL++C K+  SA CRRRLPVV+ RLKF ENL EAVT +EQGHIRIGP  V DPA  VTR+MEDF+TWVD+SKI+RKV ++ND +DD+DLL A
Sbjct:    1 MRQLKYHEEKLLKKVNFFQWKSDKNVREIQILRRYRVQNRDDYHKYNKIAGLITKLTSKLKELRQDDPTRVKTTELLIDKLYNMGLISTKKSLLQCEKIPTSAFCRRRLPVVLVRLKFCENLKEAVTFVEQGHIRIGPEVVTDPAFHVTRSMEDFITWVDSSKIRRKVMKYNDAVDDFDLLQA 183          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A7S0VRX3_9CHLO (Hypothetical protein n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VRX3_9CHLO)

HSP 1 Score: 235 bits (599), Expect = 2.600e-76
Identity = 117/181 (64.64%), Postives = 143/181 (79.01%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LKYHE KLL+K DFL WK +++LRE++V RRYH+ N D+Y +Y+KI G I++L SK+++L + DP R++ T+ LLTKLY+MGII  K SLV+C K+ VSA CRRRL VVM RLK AE L  A TLIEQGHIR+GP  V DPA  VT NMEDFVTWVD SKIKRKV ++ND LDDYDLL
Sbjct:    1 MRQLKYHEKKLLKKVDFLNWKSDDSLREIQVMRRYHIQNRDDYKKYNKIAGYIQKLTSKLKQLDSTDPERIEMTDQLLTKLYNMGIITAKKSLVQCEKLAVSAFCRRRLSVVMVRLKMAETLKVACTLIEQGHIRVGPETVMDPAYHVTLNMEDFVTWVDNSKIKRKVLKYNDKLDDYDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A077WXZ6_9FUNG (Putative 30S ribosomal protein S4 n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A077WXZ6_9FUNG)

HSP 1 Score: 232 bits (591), Expect = 4.140e-75
Identity = 110/181 (60.77%), Postives = 142/181 (78.45%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LK+HE KLL+K DFL+WK+E+N+RE+K+ RRY L   ++YH+Y+++ G IKQL ++I  L + DP R ++ + LL KLY MGII   S   +C+KVTVSA CRRRLP+VM RLK AE + EA T IEQGH+R+GPT + DPA LVTR MEDFVTWVDTSKIKRK+ ++ND LDD+DLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLQWKKEDNIREIKIIRRYGLQQREDYHKYNRLAGSIKQLANRISLLDSRDPFRAKQEKALLDKLYAMGIITSTSKFSDCNKVTVSAFCRRRLPIVMCRLKMAETVKEATTFIEQGHVRVGPTTINDPAYLVTRTMEDFVTWVDTSKIKRKIMKYNDKLDDFDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: D8TEF5_SELML (Uncharacterized protein n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8TEF5_SELML)

HSP 1 Score: 232 bits (591), Expect = 4.280e-75
Identity = 112/181 (61.88%), Postives = 141/181 (77.90%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MRKLK+HE +LL+K +FL+WKRE N REV+V +RY ++  D+Y  Y++I G + +L S +++L   DP R+Q T+ LL KLY+MGIIP K SL +C  +  SAICRRRL VV+ +L FAENL +AVT +EQGHIR+GP  + DPA LVTRNMEDFVTWVDTSKIKRKV Q+ND LDDYDLL
Sbjct:    1 MRKLKFHEQRLLKKVNFLEWKRERNSREVQVMQRYRVTGRDDYKHYNRICGMVSKLTSILKKLDPKDPFRIQMTDQLLDKLYNMGIIPTKKSLAQCESLAASAICRRRLAVVLMKLHFAENLKDAVTFVEQGHIRVGPDTITDPAFLVTRNMEDFVTWVDTSKIKRKVLQYNDRLDDYDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A168MR85_MUCCL (Uncharacterized protein n=13 Tax=Mucorineae TaxID=1344963 RepID=A0A168MR85_MUCCL)

HSP 1 Score: 231 bits (590), Expect = 5.880e-75
Identity = 112/181 (61.88%), Postives = 141/181 (77.90%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLL 181
            MR+LK+HE KLL+K DFL+WK+E+ +RE+KV RRY L   ++YH+Y+K+VG I+QL +KI  L + DP R Q+ + LL KLY+MGII   +   +C KVTVSA CRRRLP+VM RLK AE + EAVT +EQGHIR+GP  V DPA LV R MED+VTWVDTSKIKRK+ ++ND LDDYDLL
Sbjct:    1 MRQLKHHEQKLLKKVDFLQWKKEDTIREMKVIRRYFLQQREDYHKYNKLVGSIRQLANKISLLDSRDPFRTQQEKALLEKLYNMGIITATTKFSDCRKVTVSAFCRRRLPIVMCRLKMAETVKEAVTFVEQGHIRVGPQTVTDPAFLVNRTMEDYVTWVDTSKIKRKIMKYNDKLDDYDLL 181          
BLAST of Gvermi5261.t1 vs. uniprot
Match: A0A2K1JL39_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JL39_PHYPA)

HSP 1 Score: 231 bits (590), Expect = 6.080e-75
Identity = 111/182 (60.99%), Postives = 141/182 (77.47%), Query Frame = 0
Query:    1 MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIVGDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVTVSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTRNMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLN 182
            MRKLKYHE KLL+K +FL+WK+E    E++V RRYH++  ++Y  Y+KI G + +L + ++++   DP R++ TE LL KLY MG+IP K SL  C+K+TVS ICRRRL VVM RL  AEN+ EAVT +EQGHIR+GP  + +PA LVTRNMEDFVTWVD+SKIKRKV Q+ND LDDYDLLN
Sbjct:    1 MRKLKYHEQKLLKKVNFLEWKKERGEHELRVMRRYHITGREDYQEYNKICGMVTKLVTMLKKMNPQDPTRIEMTEALLEKLYSMGVIPSKKSLALCNKLTVSTICRRRLAVVMLRLNMAENMREAVTFVEQGHIRVGPDTITEPAFLVTRNMEDFVTWVDSSKIKRKVLQYNDRLDDYDLLN 182          
The following BLAST results are available for this feature:
BLAST of Gvermi5261.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3JCC8_9FLOR3.320e-11690.16U3 small nucleolar ribonucleoprotein imp3 n=1 Tax=... [more]
A0A7S1TED8_9RHOD8.640e-8264.09Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
M2XX62_GALSU3.390e-8165.19RNA-binding protein n=1 Tax=Galdieria sulphuraria ... [more]
A0A0L0SML7_ALLM31.580e-7760.77Ribosomal protein S4 n=2 Tax=Allomyces macrogynus ... [more]
L1JBM1_GUITC1.890e-7661.20Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0VRX3_9CHLO2.600e-7664.64Hypothetical protein n=1 Tax=Polytomella parva Tax... [more]
A0A077WXZ6_9FUNG4.140e-7560.77Putative 30S ribosomal protein S4 n=2 Tax=Lichthei... [more]
D8TEF5_SELML4.280e-7561.88Uncharacterized protein n=2 Tax=Selaginella moelle... [more]
A0A168MR85_MUCCL5.880e-7561.88Uncharacterized protein n=13 Tax=Mucorineae TaxID=... [more]
A0A2K1JL39_PHYPA6.080e-7560.99Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001912Ribosomal protein S4/S9, N-terminalSMARTSM01390Ribosomal_S4_2coord: 3..106
e-value: 3.2E-25
score: 99.8
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 3..60
e-value: 4.8E-8
score: 33.8
IPR002942RNA-binding S4 domainSMARTSM00363s4_6coord: 107..170
e-value: 1.2E-4
score: 31.4
IPR002942RNA-binding S4 domainPFAMPF01479S4coord: 107..153
e-value: 7.8E-11
score: 41.5
IPR002942RNA-binding S4 domainCDDcd00165S4coord: 107..176
e-value: 1.18075E-5
score: 39.5402
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 108..180
e-value: 2.7E-5
score: 26.3
IPR022801Ribosomal protein S4/S9PANTHERPTHR1183130S 40S RIBOSOMAL PROTEINcoord: 1..181
NoneNo IPR availablePANTHERPTHR11831:SF1U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP3coord: 1..181
NoneNo IPR availablePROSITEPS50889S4coord: 107..173
score: 10.155128
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 19..171

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:846802..847353 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5261.t1Gvermi5261.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 846802..847353 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5261.t1 ID=Gvermi5261.t1|Name=Gvermi5261.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=184bp
MRKLKYHEYKLLRKADFLKWKRENNLREVKVARRYHLSNPDEYHRYSKIV
GDIKQLCSKIQELKADDPIRVQRTEDLLTKLYDMGIIPIKSSLVECSKVT
VSAICRRRLPVVMKRLKFAENLTEAVTLIEQGHIRIGPTQVKDPAMLVTR
NMEDFVTWVDTSKIKRKVSQFNDNLDDYDLLNA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001912Ribosomal_S4/S9_N
IPR002942S4_RNA-bd
IPR036986S4_RNA-bd_sf
IPR022801Ribosomal_S4/S9