Gvermi5204.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5204.t1
Unique NameGvermi5204.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length335
Homology
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A2V3J9E0_9FLOR (Katanin p80 WD40 repeat-containing subunit B1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J9E0_9FLOR)

HSP 1 Score: 572 bits (1475), Expect = 2.890e-205
Identity = 280/303 (92.41%), Postives = 292/303 (96.37%), Query Frame = 0
Query:   32 MSSQITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWDERQNHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAKTLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL 334
            M+S+ITVKKRWQLSRYVDAVVSAGGGNAVAATS +TG +WDG VHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNS+VNSVAVSSSKKLVASGGQD+AVLCWNLNEPSNEPMRFEGHIDSVNSVDWN+ GDNLLTASSDGMACVWDERQNHWQAAITIPTGL VYSAVFAASG+ +VMSTEMM+V+AFDLRAE K LWRKGGY G SHCLRASPHN KIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNV+L
Sbjct:    1 MTSKITVKKRWQLSRYVDAVVSAGGGNAVAATSQITGIVWDGCVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSNVNSVAVSSSKKLVASGGQDKAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNTTGDNLLTASSDGMACVWDERQNHWQAAITIPTGLDVYSAVFAASGTTMVMSTEMMDVVAFDLRAETKALWRKGGYTGASHCLRASPHNEKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVSL 303          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A7S0ZGB4_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZGB4_9RHOD)

HSP 1 Score: 303 bits (777), Expect = 3.020e-99
Identity = 149/296 (50.34%), Postives = 208/296 (70.27%), Query Frame = 0
Query:   36 ITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWDERQNH-WQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAKTLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAEL 330
            ++V++ W++ R VDAVV+AGGGN VAATS LTGSIWDGRV GL G+G +EAEI VE G+ADLC + EGQ++A  DDG VR +HSGG + L GGHNS VNSV+++ +    A+ G DR +  ++L + S EP RFE H DSVNSVDW SGG+ LL+ASSDG  CVWD R     Q+++ +  G   Y AVF+ +G  +++ TE  E++ +D+R+  + LW + G KG    L+ SPHNA  VA  ++ P+V +++V +G +    +HH D+VR+++WD Q  GRL++GSWDK+V EL
Sbjct:    1 MSVQQEWKVKRCVDAVVAAGGGNVVAATSNLTGSIWDGRVFGLTGSGLVEAEILVECGMADLCAIGEGQYLAACDDGMVRAIHSGGAMVLGGGHNSVVNSVSITGTTG--ATAGADRVIQFYDLEKHSTEPTRFEAHADSVNSVDW-SGGNKLLSASSDGTVCVWDARNRPICQSSLAVHVGSVAYVAVFSMNGDRVLIGTEKNELLCYDIRSTMQPLWSEIGLKGPVRNLKQSPHNASQVAAGTDAPSVLIINVESGKIERTMYHHRDFVRALSWDKQVPGRLYTGSWDKTVVEL 293          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A6T6DDA3_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A6T6DDA3_9RHOD)

HSP 1 Score: 248 bits (633), Expect = 4.670e-78
Identity = 122/253 (48.22%), Postives = 168/253 (66.40%), Query Frame = 0
Query:   79 MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWDERQNHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAKT-LWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSF-HHTDYVRSVAWDSQAEGRLFSGSWDKSVAE 329
            M  G+IEAEIEV+ G+ADLC L+EGQF+A  DDG+VRV+HSGGVLPLP  H+    +VAVS  +K+VASGG D  +LCW+L+EP+N+P R EGH D V +VDW+  G+ LL++S DG  CVWD R   WQ    +  G    +A F  +G  +++ TE +E+   DLR +A T +WR+   K     +R  PHN+ I A++ + PAV +L V NG+   K    HTD++R ++WD Q  G+L +GSWDK+V E
Sbjct:    1 MATGEIEAEIEVDCGVADLCGLEEGQFVAACDDGTVRVIHSGGVLPLPSCHDDMTITVAVSPERKMVASGGADGVILCWDLHEPANDPYRQEGHKDGVTAVDWS--GNILLSSSKDGRICVWDARNKPWQPVARVKVGSMALTAAFCRNGERILVGTENLEIHGHDLRGQAMTPMWREK-VKAPVRKIRPCPHNSNICAISMDLPAVHILQVDNGDEFDKPILGHTDFIRGLSWDPQYAGKLLTGSWDKTVKE 250          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A5J4Z1R0_PORPP (Peroxisomal targeting signal 2 receptor n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z1R0_PORPP)

HSP 1 Score: 246 bits (627), Expect = 1.730e-76
Identity = 141/301 (46.84%), Postives = 185/301 (61.46%), Query Frame = 0
Query:   40 KRWQLSRYVDAVVSAGGG-NAVAATSMLTGSIWDGRVHGL-MGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQDRAVLCWNLNEPSN----EPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWDERQ-NHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAKT-LWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 332
            K W+LS  VDAV +AG G N V ATS LTGS+W+G+V+G+ +GA Q  AEI +E  +ADLC + EGQF+AG DDG VR+VH G  +PL G HN  V +VA S      AS G DR VL  +L         E  R   H  +VNSVDW+  G  LLTAS DG   VWD R   + +   +   G   Y AVF  +G  +V  TE  E++AFDLRA A T LW + G++G    ++A PHN  +VAVA++ P+V  + +  G V  + F+H D+VR++AWD    GRLFSGSWD++V E+ V
Sbjct:    5 KEWRLSMAVDAVAAAGDGKNIVVATSNLTGSVWEGKVYGIGLGASQPLAEIPIECSLADLCPIREGQFLAGCDDGYVRIVHEGAPIPLLGAHNGPVTAVATSGDT--AASAGTDRMVLLHDLVRLMELNGIEATRLTAHTSAVNSVDWS--GPMLLTASGDGTVRVWDTRNLANAKPTYSAAVGSMAYCAVFCRNGERIVAGTEAHELVAFDLRAGATTALWTEDGFRGPVRKIKACPHNPGLVAVATDTPSVATVLIDTGKVDKQIFNHRDFVRALAWDETTPGRLFSGSWDRTVCEIKV 301          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A1X6NVM9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NVM9_PORUM)

HSP 1 Score: 210 bits (534), Expect = 1.810e-61
Identity = 141/385 (36.62%), Postives = 192/385 (49.87%), Query Frame = 0
Query:   31 AMSSQITVKKRWQLSRYVDAVVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCLDEGQFIAGADDGSVRVVHSGGVLPLPGGHN--SSVNSVAVSSSK-------------------------------KLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWN-------SGGDNLLTASSDGMACVWDERQNHWQAA---------------------------------------------------ITIP-TGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAK-TLWRKGGY-KGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFHHTDYVRSVAWDSQAEGRLFSG 321
            A +   TV   W+L R+VDAV+ AG GNAVAATS LTG++WDGRV GL+  GQ EA++EVE G++ L  L EGQFIAG DDG VRVVHSGG+LPLPGGH+  SS+   A+SSS                                + VASGG D   L W++  P+  P R  GH  +V +VD+        S G  LLTAS DG A VWD+R     AA                                                   + +P TG  V +A +A  G+ ++++T+  +V  +D+RA ++  +W    + + V      +     +VA  S+CPAVT+L + +G++ G+SFHH D+VR VAWD       F G
Sbjct:    4 AAAPAATVGTVWRLDRHVDAVIYAGDGNAVAATSSLTGAVWDGRVIGLIRGGQTEAQLEVEVGLSSLATLAEGQFIAGGDDGVVRVVHSGGILPLPGGHDGGSSICVAALSSSPLTSPGGDAXXXXXXXXXXXXXXXXXXDAGTVQRVASGGSDGVALVWDVASPAAAPSRIIGHSCAVTAVDFPPPSSLVASRGGGLLTASQDGRAAVWDDRFGASDAAGGGGDSGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATPASASRLPAMVLPLTGDAVTAAAYAPDGTGVLVATDRCDVALWDVRAASRGAVWVTDAFWRPVRAIAPTAAVGGGVVACGSDCPAVTVLQLGDGSLGGRSFHHADFVRGVAWDKTVAELQFEG 388          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A1B6DLS7_9HEMI (Uncharacterized protein n=2 Tax=Clastoptera arizonana TaxID=38151 RepID=A0A1B6DLS7_9HEMI)

HSP 1 Score: 68.9 bits (167), Expect = 1.700e-9
Identity = 70/261 (26.82%), Postives = 116/261 (44.44%), Query Frame = 0
Query:   89 EVETGIADLCCLDEGQ-FIAGADDGSVRVV--------HSGGVLP--LPGGHNSSVNSVAVSSSKKLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASS--DGMACVWDERQNHWQAAITIPTGLHVYSAVF--AASGSMLVMSTEMMEVMAFDLRAEAKTLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNG--NVLGKSFHHTDYVRSVAWDSQAEGRLFSGSWDKSVAELNV 332
            + +T ++D   LD  Q  I G D G+V V         HS  ++       H+++V ++AVSS KK VASGG D  +  WN  +   +      H   V ++ +     N   ASS  DG   +WD RQ    A +   T     SA+   +   ++L + + +  +   DLR  +  +  +   + +   L     N+  +A  +    V ++  S+   N++     H D+VR +AW  + +  LFS  WDK V + NV
Sbjct:   73 DCKTSVSDGKFLDSKQKIIVGEDSGAVTVYTLTELEDDHSFHLVSESTRNDHDNTVLTIAVSSDKKQVASGGMDLCIKIWNTEDLLIKNNYQLAHCHHVTNLAFRPQDSNYTFASSSLDGTVLLWDSRQFE-PATVLRDTPNEGLSALAWNSVDDNVLAVGSVIGNIDLIDLRTVSNVMESRPFNRAIHKLLYI---NSNSLAAVAESHEVKVVQHSSDKLNIVYNDERHNDFVRGLAWHPKMKC-LFSCGWDKQVIKHNV 328          
BLAST of Gvermi5204.t1 vs. uniprot
Match: UPI000854A1BC (telomerase protein component 1 n=1 Tax=Nanorana parkeri TaxID=125878 RepID=UPI000854A1BC)

HSP 1 Score: 59.7 bits (143), Expect = 4.600e-6
Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 0
Query:  128 GHNSSVNSVAVSSSKKLVASGGQDRAVLCWNL--NEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWD 201
            GH ++V   + SS  +L+A+GGQDR+VLCW++  N P         H D V    W   G  L++ S DG  C+WD
Sbjct: 1982 GHTAAVTCCSFSSDGRLLATGGQDRSVLCWDVSVNPPILSCTLLSCHKDWVTGCSWTDSG-MLISGSGDGALCLWD 2056          
BLAST of Gvermi5204.t1 vs. uniprot
Match: A0A086TKP6_9FUNG (Uncharacterized protein n=1 Tax=Podila verticillata NRRL 6337 TaxID=1069443 RepID=A0A086TKP6_9FUNG)

HSP 1 Score: 59.3 bits (142), Expect = 5.690e-6
Identity = 39/142 (27.46%), Postives = 68/142 (47.89%), Query Frame = 0
Query:  141 SKKLVASGGQDRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVWDERQNHWQAAITIPTGLHVYSAVFA--ASGSMLVMSTEMMEVMAFDLRAEAKTLWRKGGYKGVSHCLRASPHNAKIVAVASN 280
            S++L+ASGG+D  V+CW++   S   +    H  SV +VDW   G  +++   +G   VWD   N  ++   +P G H  S + A  +S   + + TE  +++   ++       R  G+K   H L   P    I A+ ++
Sbjct:  134 SRELIASGGEDGRVVCWDIVSQSTIAVLQGTHQVSVKAVDWTMDGKYIVSGDKNGKISVWDPAANAVESK-DLP-GRHNVSCIKALHSSPDTVAVGTEGGDILIVSIKPSITVKLRLHGHKAKIHSLAWQPVTGSINALLAS 273          
The following BLAST results are available for this feature:
BLAST of Gvermi5204.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J9E0_9FLOR2.890e-20592.41Katanin p80 WD40 repeat-containing subunit B1 n=1 ... [more]
A0A7S0ZGB4_9RHOD3.020e-9950.34Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]
A0A6T6DDA3_9RHOD4.670e-7848.22Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A5J4Z1R0_PORPP1.730e-7646.84Peroxisomal targeting signal 2 receptor n=1 Tax=Po... [more]
A0A1X6NVM9_PORUM1.810e-6136.62Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A1B6DLS7_9HEMI1.700e-926.82Uncharacterized protein n=2 Tax=Clastoptera arizon... [more]
UPI000854A1BC4.600e-639.47telomerase protein component 1 n=1 Tax=Nanorana pa... [more]
A0A086TKP6_9FUNG5.690e-627.46Uncharacterized protein n=1 Tax=Podila verticillat... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 119..158
e-value: 0.0011
score: 28.2
coord: 162..201
e-value: 1.3E-7
score: 41.2
coord: 292..331
e-value: 0.14
score: 21.2
coord: 81..118
e-value: 25.0
score: 8.2
IPR001680WD40 repeatPFAMPF00400WD40coord: 169..201
e-value: 5.8E-5
score: 23.8
coord: 127..158
e-value: 4.1E-5
score: 24.3
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 169..201
score: 13.181907
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 126..167
score: 11.678087
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 45..333
e-value: 5.2E-47
score: 162.3
NoneNo IPR availablePANTHERPTHR46853METHYLOSOME PROTEIN 50coord: 35..330
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 34..334
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 14..25
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..13
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 26..33
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..33
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 169..201
score: 10.943775
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 126..160
score: 9.704691
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 94..328

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:590366..591370 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1Gvermi5204.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 590366..591370 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=335bp
LSYSSSKHISACNATLLKFFFVAAVVSAPKAMSSQITVKKRWQLSRYVDA
VVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCL
DEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQ
DRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVW
DERQNHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAK
TLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFH
HTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf