Gvermi5204.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi5204.t1
Unique NameGvermi5204.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length335
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:590366..591370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog121225.PHUM022330-PA
Preferred nameWDR77
PFAMsWD40
Max annot lvl33208|Metazoa
KEGG koko:K13221
GOsGO:0000003,GO:0000166,GO:0000578,GO:0001655,GO:0002065,GO:0002067,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003712,GO:0003713,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005794,GO:0005829,GO:0006355,GO:0006357,GO:0006464,GO:0006479,GO:0006807,GO:0007028,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007315,GO:0007350,GO:0007351,GO:0007389,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008284,GO:0008285,GO:0008327,GO:0008358,GO:0008595,GO:0008757,GO:0009790,GO:0009798,GO:0009880,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009948,GO:0009952,GO:0009987,GO:0009994,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0012505,GO:0016043,GO:0016273,GO:0016274,GO:0016740,GO:0016741,GO:0018193,GO:0018195,GO:0018216,GO:0019219,GO:0019222,GO:0019538,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0030154,GO:0030374,GO:0030850,GO:0030855,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032259,GO:0032501,GO:0032502,GO:0032504,GO:0032991,GO:0034708,GO:0034709,GO:0035246,GO:0035282,GO:0035770,GO:0036094,GO:0036211,GO:0036464,GO:0042127,GO:0043170,GO:0043186,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043565,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045495,GO:0045935,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048599,GO:0048608,GO:0048609,GO:0048731,GO:0048732,GO:0048856,GO:0048869,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0051704,GO:0060255,GO:0060293,GO:0060429,GO:0060525,GO:0060528,GO:0060742,GO:0060768,GO:0060770,GO:0061458,GO:0065007,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0097159,GO:0140096,GO:0140110,GO:1901265,GO:1901363,GO:1901564,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990904,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2001141
Evalue2.69e-08
EggNOG OGsCOG2319@1|root,KOG0284@2759|Eukaryota,39EDU@33154|Opisthokonta,3BFCW@33208|Metazoa,3CUE8@33213|Bilateria,41ZT1@6656|Arthropoda,3SMS8@50557|Insecta,3ED2H@33342|Paraneoptera
DescriptionWD domain, G-beta repeat
COG categoryA
BRITEko00000,ko03041
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5204Gvermi5204Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_24228 590366..591370 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1.stop1Gvermi5204.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_24228 590366..590368 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1.CDS1Gvermi5204.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_24228 590366..591370 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1.exon1Gvermi5204.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_24228 590366..591370 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1.start1Gvermi5204.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_24228 591368..591370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi5204.t1Gvermi5204.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_24228 590366..591370 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=335bp
LSYSSSKHISACNATLLKFFFVAAVVSAPKAMSSQITVKKRWQLSRYVDA
VVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCL
DEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQ
DRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVW
DERQNHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAK
TLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFH
HTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL*
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spliced messenger RNA

>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_24228:590366..591370- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
TTGTCGTACTCGTCAAGCAAACATATTTCAGCTTGCAACGCAACTCTTCT
GAAGTTCTTTTTTGTGGCGGCAGTTGTTTCTGCTCCGAAGGCCATGTCTT
CCCAGATCACTGTTAAGAAACGATGGCAACTGTCCCGCTATGTCGATGCC
GTCGTATCGGCGGGCGGCGGAAACGCGGTTGCGGCCACATCCATGCTCAC
GGGCTCAATCTGGGATGGACGCGTACACGGTTTGATGGGGGCCGGTCAGA
TAGAAGCAGAGATAGAAGTCGAGACAGGCATTGCCGATCTATGCTGCCTA
GACGAAGGTCAGTTTATCGCCGGCGCCGATGATGGTTCCGTACGGGTCGT
TCACAGCGGTGGCGTCTTACCTCTTCCAGGTGGACATAATTCAAGCGTAA
ACAGCGTTGCCGTGAGCTCGTCAAAGAAGCTTGTTGCATCCGGTGGTCAG
GACAGAGCAGTACTGTGTTGGAACCTTAATGAGCCTTCCAATGAACCAAT
GCGCTTTGAAGGACATATCGATTCTGTGAATTCCGTCGATTGGAATTCTG
GAGGAGATAATCTACTCACTGCTAGTTCTGATGGAATGGCATGTGTTTGG
GATGAGAGACAAAATCATTGGCAAGCCGCAATAACAATACCCACAGGTTT
GCATGTCTACTCAGCAGTGTTTGCTGCTTCAGGCTCAATGCTCGTAATGT
CAACCGAAATGATGGAAGTGATGGCATTCGACCTTCGAGCGGAAGCGAAA
ACCTTATGGCGAAAGGGTGGCTATAAAGGAGTTTCGCACTGTTTACGCGC
ATCCCCGCATAATGCAAAGATCGTGGCAGTAGCGTCGAATTGTCCGGCTG
TCACATTGCTCGATGTTTCGAACGGAAACGTCCTTGGAAAAAGCTTCCAC
CATACTGATTATGTGAGAAGTGTCGCATGGGACTCCCAAGCAGAGGGGCG
TTTGTTTAGCGGCTCATGGGACAAGAGTGTGGCCGAGCTTAATGTGGCTT
TATGA
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protein sequence of Gvermi5204.t1

>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=335bp
LSYSSSKHISACNATLLKFFFVAAVVSAPKAMSSQITVKKRWQLSRYVDA
VVSAGGGNAVAATSMLTGSIWDGRVHGLMGAGQIEAEIEVETGIADLCCL
DEGQFIAGADDGSVRVVHSGGVLPLPGGHNSSVNSVAVSSSKKLVASGGQ
DRAVLCWNLNEPSNEPMRFEGHIDSVNSVDWNSGGDNLLTASSDGMACVW
DERQNHWQAAITIPTGLHVYSAVFAASGSMLVMSTEMMEVMAFDLRAEAK
TLWRKGGYKGVSHCLRASPHNAKIVAVASNCPAVTLLDVSNGNVLGKSFH
HTDYVRSVAWDSQAEGRLFSGSWDKSVAELNVAL*
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mRNA from alignment at ScGOVlb_24228:590366..591370-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=1005bp|location=Sequence derived from alignment at ScGOVlb_24228:590366..591370- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCGTACTCGTCAAGCAAACATATTTCAGCTTGCAACGCAACTCTTCT
GAAGTTCTTTTTTGTGGCGGCAGTTGTTTCTGCTCCGAAGGCCATGTCTT
CCCAGATCACTGTTAAGAAACGATGGCAACTGTCCCGCTATGTCGATGCC
GTCGTATCGGCGGGCGGCGGAAACGCGGTTGCGGCCACATCCATGCTCAC
GGGCTCAATCTGGGATGGACGCGTACACGGTTTGATGGGGGCCGGTCAGA
TAGAAGCAGAGATAGAAGTCGAGACAGGCATTGCCGATCTATGCTGCCTA
GACGAAGGTCAGTTTATCGCCGGCGCCGATGATGGTTCCGTACGGGTCGT
TCACAGCGGTGGCGTCTTACCTCTTCCAGGTGGACATAATTCAAGCGTAA
ACAGCGTTGCCGTGAGCTCGTCAAAGAAGCTTGTTGCATCCGGTGGTCAG
GACAGAGCAGTACTGTGTTGGAACCTTAATGAGCCTTCCAATGAACCAAT
GCGCTTTGAAGGACATATCGATTCTGTGAATTCCGTCGATTGGAATTCTG
GAGGAGATAATCTACTCACTGCTAGTTCTGATGGAATGGCATGTGTTTGG
GATGAGAGACAAAATCATTGGCAAGCCGCAATAACAATACCCACAGGTTT
GCATGTCTACTCAGCAGTGTTTGCTGCTTCAGGCTCAATGCTCGTAATGT
CAACCGAAATGATGGAAGTGATGGCATTCGACCTTCGAGCGGAAGCGAAA
ACCTTATGGCGAAAGGGTGGCTATAAAGGAGTTTCGCACTGTTTACGCGC
ATCCCCGCATAATGCAAAGATCGTGGCAGTAGCGTCGAATTGTCCGGCTG
TCACATTGCTCGATGTTTCGAACGGAAACGTCCTTGGAAAAAGCTTCCAC
CATACTGATTATGTGAGAAGTGTCGCATGGGACTCCCAAGCAGAGGGGCG
TTTGTTTAGCGGCTCATGGGACAAGAGTGTGGCCGAGCTTAATGTGGCTT
TATGA
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Coding sequence (CDS) from alignment at ScGOVlb_24228:590366..591370-

>Gvermi5204.t1 ID=Gvermi5204.t1|Name=Gvermi5204.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=1005bp|location=Sequence derived from alignment at ScGOVlb_24228:590366..591370- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
TTGTCGTACTCGTCAAGCAAACATATTTCAGCTTGCAACGCAACTCTTCT
GAAGTTCTTTTTTGTGGCGGCAGTTGTTTCTGCTCCGAAGGCCATGTCTT
CCCAGATCACTGTTAAGAAACGATGGCAACTGTCCCGCTATGTCGATGCC
GTCGTATCGGCGGGCGGCGGAAACGCGGTTGCGGCCACATCCATGCTCAC
GGGCTCAATCTGGGATGGACGCGTACACGGTTTGATGGGGGCCGGTCAGA
TAGAAGCAGAGATAGAAGTCGAGACAGGCATTGCCGATCTATGCTGCCTA
GACGAAGGTCAGTTTATCGCCGGCGCCGATGATGGTTCCGTACGGGTCGT
TCACAGCGGTGGCGTCTTACCTCTTCCAGGTGGACATAATTCAAGCGTAA
ACAGCGTTGCCGTGAGCTCGTCAAAGAAGCTTGTTGCATCCGGTGGTCAG
GACAGAGCAGTACTGTGTTGGAACCTTAATGAGCCTTCCAATGAACCAAT
GCGCTTTGAAGGACATATCGATTCTGTGAATTCCGTCGATTGGAATTCTG
GAGGAGATAATCTACTCACTGCTAGTTCTGATGGAATGGCATGTGTTTGG
GATGAGAGACAAAATCATTGGCAAGCCGCAATAACAATACCCACAGGTTT
GCATGTCTACTCAGCAGTGTTTGCTGCTTCAGGCTCAATGCTCGTAATGT
CAACCGAAATGATGGAAGTGATGGCATTCGACCTTCGAGCGGAAGCGAAA
ACCTTATGGCGAAAGGGTGGCTATAAAGGAGTTTCGCACTGTTTACGCGC
ATCCCCGCATAATGCAAAGATCGTGGCAGTAGCGTCGAATTGTCCGGCTG
TCACATTGCTCGATGTTTCGAACGGAAACGTCCTTGGAAAAAGCTTCCAC
CATACTGATTATGTGAGAAGTGTCGCATGGGACTCCCAAGCAGAGGGGCG
TTTGTTTAGCGGCTCATGGGACAAGAGTGTGGCCGAGCTTAATGTGGCTT
TATGA
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