Gvermi5147.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male
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Overview
Homology
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A2V3J6Q7_9FLOR (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR) HSP 1 Score: 518 bits (1334), Expect = 1.490e-184 Identity = 251/296 (84.80%), Postives = 274/296 (92.57%), Query Frame = 0
Query: 1 MPDPALRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTEDW 296
MPDP LR+ QTTILR+CQ P+GLTDGEIVQ+L DVKPKHRLDSYNELLR GRLKLLKK +GEG TKK+VVVYQWVSLKDAEKFRGLDA ERMVYDMI+RSGQNGVTKRDMKFRTNIQN SELKQIVERLI R LVKEIKSVQG NKKVYIASEVEPSAAHTGGPWYND++EFDTEFIETIY+H+L +M TME+VT++SVT+YVADLKIS+E L KSDIRQLMMTMLYDSVIE+C+GR DGG+YYRRAT TP VNHL+S+PCGSCPVFH+CSPDGVISPKTCVYMKEWLEQT DW
Sbjct: 1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQTTDW 296
BLAST of Gvermi5147.t1 vs. uniprot
Match: R7QCX5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR) HSP 1 Score: 357 bits (915), Expect = 3.920e-121 Identity = 168/273 (61.54%), Postives = 213/273 (78.02%), Query Frame = 0
Query: 24 LTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTEDW 296
+TD E+ +L D K K R+ +YN+LL GR++L +V G G +K+ V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R L+KEIKSVQGTNK++YI + +EPS HTGGPWYND+QEFDT FIE IY VL + YVTVD VT YVA++K+S+E L SDI+ LM TMLYD+VIE C+G+ DG EY+R TPAVNHL SIPCGSCPVFH+C P GVISP+TCVYM +WL+ DW
Sbjct: 1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQTCVYMGDWLKSVTDW 273
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A6T5WUV9_9RHOD (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A6T5WUV9_9RHOD) HSP 1 Score: 204 bits (518), Expect = 1.820e-60 Identity = 110/299 (36.79%), Postives = 176/299 (58.86%), Query Frame = 0
Query: 12 TILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCD-------------------GRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
++L ++ P G +D EI +Q+G V PK R+D+YN LL+ GRL +LK+ +GV V+Y+ VS + A K RGL A ER+V+ I++ G G+ RD++F++ +Q ++ ++++ L TRRLVK +KSV+ NKK Y+ +++ PS TGGPWY+D++E+DTEFI +Y+ +L ++ + +V T ++ + IS E L++ ++ L+ TML+D +E + G Y R + + L +PCG CP+ EC P GVISP TC Y+ EWL+
Sbjct: 25 SLLSAARSRPGGASDQEIREQIGPSVTPKMRMDAYNHLLQKGRL-VLKRRESDGV-----VLYEEVSAEAAAKLRGLGAEERLVFAAIEKCGNVGIWTRDLRFKSGLQQ-NQFSKVLKTLETRRLVKAVKSVKARNKKFYMLADLAPSKELTGGPWYSDQKEYDTEFIFALYTQLLRFFRSLPHASVQDATRFIENSGISKEKLEREHVQALIDTMLFDGALEAFEDKGSHESFMADALGQSSATGLSKSPRYCVRPSRVHVQSVLAEMPCGLCPLQRECHPGGVISPSTCKYLDEWLD 316
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A2P6V1J4_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO) HSP 1 Score: 186 bits (471), Expect = 8.030e-54 Identity = 107/289 (37.02%), Postives = 163/289 (56.40%), Query Frame = 0
Query: 7 RSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRAT-HTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTE 294
R + +L VC+ HP+G+ D + +L DV R + N LL + +L++L +Y+ + D +F+GL A + +VY IQ +G G+ RDMK RTN+Q P K I++ L R LVK +KSVQ ++KVY+ E+EP+ TGGPW+ + FD+EF+ + L ++ + ++ + ++ + IS +AL++ D+ +++ T+ YD IEQ + DDG +YR P LTSIPCG CPVF EC G ISP TC Y ++WLEQ E
Sbjct: 3 RKVEEMVLAVCRKHPEGVADTVLESEL-PDVSVNDRALAINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIE-EDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPATCTYYQDWLEQME 282
BLAST of Gvermi5147.t1 vs. uniprot
Match: E1Z933_CHLVA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA) HSP 1 Score: 183 bits (465), Expect = 5.670e-53 Identity = 105/286 (36.71%), Postives = 165/286 (57.69%), Query Frame = 0
Query: 7 RSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
R + IL VC+ HP+G+ D + +L V R + N LL + +L++L +Y+ ++ DA +F+GL A + +VY IQ +G G+ RDMK RTN+Q P ++ +I++ L R LVK IKSVQ ++KVY+ E+EP+ TGGPWY + FD+EFI + + ++ T T+ + ++ + IS +AL++ D+ +++ T+ D IE +G +DG +YR + P TSIPCG CPVF+EC G ISP+TC+Y +WL+
Sbjct: 3 RKVEELILTVCRKHPEGVQDTALEAEL-PSVAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLD 280
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A061SD36_9CHLO (DNA-directed RNA polymerase III subunit C34 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SD36_9CHLO) HSP 1 Score: 183 bits (465), Expect = 5.290e-52 Identity = 103/289 (35.64%), Postives = 167/289 (57.79%), Query Frame = 0
Query: 4 PALRSTQTTILRVCQAHPDGLTDGEIVQQL-GKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
P+ + + I+ +C+ H +GL++ + ++L G D+ K + N LL+ RL++ K G +VY+ + ++DA KF+GL E +VY +I+++G G+ +DMKF++N+Q P ++ +I++ L R LVK ++SV G NKKVY+ E+EPS TGG WY EQ+FD+EFIE + + VT+ V E++ L++ D+ ++ +++YD I+ D DD + P + TSIPCG CPVF +C PDG ISP C+Y +WL+
Sbjct: 86 PSSGTAEQGIIDLCRKHSEGLSEAVLDKELSGFDISAKAA--AINSLLQQQRLQIFKSPDGS-------LVYKEIKVEDAAKFKGLGPQEMLVYQLIKQTGNKGMWTKDMKFQSNLQQP-QITKILKTLEGRNLVKSVRSVTGGNKKVYMLYELEPSRELTGGAWYT-EQKFDSEFIEALREACSQFIHKQGDVTLGDVVEFIHSRGFVKVDLREEDVLSVINSLVYDGRIDSVDDEDDVEHFRPAMLKIPRQSAFTSIPCGVCPVFAQCRPDGPISPAKCIYFDKWLD 363
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI) HSP 1 Score: 177 bits (450), Expect = 1.280e-50 Identity = 107/295 (36.27%), Postives = 163/295 (55.25%), Query Frame = 0
Query: 2 PDPALRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGE----YYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
PD A+ + I +CQ G+T + +L D+ + + N LL +L++ T+ + Y+ V+ +D +FRGL + E +VY +IQ S G+ RD+K R+N+Q P ++ +I++ L RRL+K +KSV N+KVY+ E+EPS TGG WY EQEFD EFI + V + VT++ + +V + L+ D +Q+ T++YD +E+ D + +YR + + P N TSIPCG CPV HECS DG+ISP TCVY +EWL+
Sbjct: 6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDEL-PDIPLEELGSALNVLLSRHQLQMY--------TQASTLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPATCVYYQEWLQ 289
BLAST of Gvermi5147.t1 vs. uniprot
Match: I0Z1U2_COCSC (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1U2_COCSC) HSP 1 Score: 174 bits (441), Expect = 1.860e-49 Identity = 101/283 (35.69%), Postives = 159/283 (56.18%), Query Frame = 0
Query: 10 QTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
+ +IL +C+ HP+GL + + Q + R + N LL RL++L+ + +VYQ V ++A K +GL A + +VY I ++G G+ +D+K RTN+Q P ++ +I++ L R LVK +KSV ++KVYI E+EP+ TGG WY Q+FD EFI+ + ++ T++ V ++V S L+ +D+ ++ T+ +D ++E D GE YR A H P + TS+PCG CPV +ECS GVISP TC Y + WL+
Sbjct: 6 EESILALCRQHPEGLPEAVLEQY----IPATQRTTAMNNLLAKHRLRILQH------PRDNSLVYQEVIQEEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQP-QITKILKNLDQRSLVKSVKSVINPSRKVYILFELEPARELTGGAWYTG-QDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVES--SLSDDGEVYRPARHVVPKTSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLD 274
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A5J4XES7_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XES7_9CHLO) HSP 1 Score: 169 bits (429), Expect = 1.290e-47 Identity = 97/286 (33.92%), Postives = 156/286 (54.55%), Query Frame = 0
Query: 6 LRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
+ + T IL + + P+G+ + +L R D+ N LL++ +++L VY+ V + + +GL +VY I+ +G GV +DMKF+TN+Q P ++ +I++ L TR LVK IK V +KK Y+ ++EP+ TGG WY D Q++D+EFI+ + + + T++ V+ ++ D IS L+ D+ ++ T+ YD IE+ D D + + P + TSIPCG CPVF+EC+PDG ISP TCVY ++WLE
Sbjct: 1 MEAAMTAILDLFKRMPEGIPQHVVPAELAGTPASVQR-DAVNRLLKDKKIQLQM-----SANDSNTFVYKEVEAGKSARLKGLAPEFLLVYQCIEAAGNTGVWTKDMKFKTNLQQP-QITKILKELETRTLVKAIKPVNQPSKKFYMLYDLEPAREITGGAWYTD-QDYDSEFIQVLQTQCFKFIKQEGDPTLEDVSTFIHDKGISRVQLRDEDVMMILNTLEYDGQIEKIDSPDGEDRFRQALLAIPESSAFTSIPCGVCPVFNECTPDGPISPATCVYFQQWLE 278
BLAST of Gvermi5147.t1 vs. uniprot
Match: K1RBD0_CRAGI (DNA-directed RNA polymerase III subunit RPC6 n=3 Tax=Crassostrea TaxID=6564 RepID=K1RBD0_CRAGI) HSP 1 Score: 165 bits (418), Expect = 1.350e-45 Identity = 99/306 (32.35%), Postives = 163/306 (53.27%), Query Frame = 0
Query: 10 QTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHM-----------------MTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIE------QCDGRDDGG-EYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
+T + +CQA P+G+TD I ++L + K R+ N LL G++ LLK ++Y+ A + +G D E++VY +I+ +G G+ RD++F+ N+ +++ +I++ L T++L+K +KSV + KKVY+ +EP + TGG WY+D Q+F++EF+E + ++ + ++ V +Y++DL IS L K DI ++ T++YD +E Q DG + YR L +PCG+CPVF +C G +SP TCVYMKEWLE
Sbjct: 17 ETRFIMLCQASPEGITDNVIQKELPQ-CDTKQRMTIVNRLLSMGKIDLLKS--------GSKLLYRLKDPDSARQVKGGDNQEKLVYQIIKDAGNKGIWIRDIRFKCNLLL-TQVNKILKNLETKKLIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYSD-QDFESEFVEVLNQQCFKYLEQRAAAAREAKSDPIAQRNASFTPLEDVWKYISDLGISKVQLSKEDIETILNTLIYDGKVERSLVAGQATASGDGYVKLYRSVQPLIPTTGLMRMPCGACPVFDQCYEGGAVSPTTCVYMKEWLE 311 The following BLAST results are available for this feature:
BLAST of Gvermi5147.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topInterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
Alignments
The following features are aligned
Analyses
This polypeptide is derived from or has results from the following analyses
Relationships
This polypeptide derives from the following mRNA feature(s):
Sequences
The following sequences are available for this feature:
polypeptide sequence >Gvermi5147.t1 ID=Gvermi5147.t1|Name=Gvermi5147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bpback to top |