Gvermi5147.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5147.t1
Unique NameGvermi5147.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length297
Homology
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A2V3J6Q7_9FLOR (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6Q7_9FLOR)

HSP 1 Score: 518 bits (1334), Expect = 1.490e-184
Identity = 251/296 (84.80%), Postives = 274/296 (92.57%), Query Frame = 0
Query:    1 MPDPALRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTEDW 296
            MPDP LR+ QTTILR+CQ  P+GLTDGEIVQ+L  DVKPKHRLDSYNELLR GRLKLLKK +GEG TKK+VVVYQWVSLKDAEKFRGLDA ERMVYDMI+RSGQNGVTKRDMKFRTNIQN SELKQIVERLI R LVKEIKSVQG NKKVYIASEVEPSAAHTGGPWYND++EFDTEFIETIY+H+L +M TME+VT++SVT+YVADLKIS+E L KSDIRQLMMTMLYDSVIE+C+GR DGG+YYRRAT TP VNHL+S+PCGSCPVFH+CSPDGVISPKTCVYMKEWLEQT DW
Sbjct:    1 MPDPLLRALQTTILRICQTCPEGLTDGEIVQRLDTDVKPKHRLDSYNELLRTGRLKLLKKTVGEGPTKKDVVVYQWVSLKDAEKFRGLDATERMVYDMIERSGQNGVTKRDMKFRTNIQNTSELKQIVERLIARGLVKEIKSVQGANKKVYIASEVEPSAAHTGGPWYNDDKEFDTEFIETIYAHILSYMGTMEFVTIESVTDYVADLKISNEDLTKSDIRQLMMTMLYDSVIEECEGRKDGGDYYRRATSTPGVNHLSSVPCGSCPVFHDCSPDGVISPKTCVYMKEWLEQTTDW 296          
BLAST of Gvermi5147.t1 vs. uniprot
Match: R7QCX5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QCX5_CHOCR)

HSP 1 Score: 357 bits (915), Expect = 3.920e-121
Identity = 168/273 (61.54%), Postives = 213/273 (78.02%), Query Frame = 0
Query:   24 LTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTEDW 296
            +TD E+  +L  D K K R+ +YN+LL  GR++L  +V G G  +K+ V+YQWVS +DAEKF+GLDA++RMV D++ + GQNG TK++MKFRTNIQ+ +ELKQI+ERLI+R L+KEIKSVQGTNK++YI + +EPS  HTGGPWYND+QEFDT FIE IY  VL  +    YVTVD VT YVA++K+S+E L  SDI+ LM TMLYD+VIE C+G+ DG EY+R    TPAVNHL SIPCGSCPVFH+C P GVISP+TCVYM +WL+   DW
Sbjct:    1 MTDKEVTAKLHFDTKAKIRIAAYNKLLAKGRIRLAARVTGTGENRKQQVLYQWVSAEDAEKFKGLDASDRMVLDLVVKGGQNGATKKEMKFRTNIQSNTELKQILERLISRNLIKEIKSVQGTNKRIYIKAGLEPSTLHTGGPWYNDDQEFDTVFIEAIYEQVLAFIKKTNYVTVDQVTSYVAEIKLSNEELSHSDIKSLMNTMLYDTVIELCEGKGDGHEYFRHVQPTPAVNHLASIPCGSCPVFHDCVPGGVISPQTCVYMGDWLKSVTDW 273          
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A6T5WUV9_9RHOD (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A6T5WUV9_9RHOD)

HSP 1 Score: 204 bits (518), Expect = 1.820e-60
Identity = 110/299 (36.79%), Postives = 176/299 (58.86%), Query Frame = 0
Query:   12 TILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCD-------------------GRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            ++L   ++ P G +D EI +Q+G  V PK R+D+YN LL+ GRL +LK+   +GV     V+Y+ VS + A K RGL A ER+V+  I++ G  G+  RD++F++ +Q  ++  ++++ L TRRLVK +KSV+  NKK Y+ +++ PS   TGGPWY+D++E+DTEFI  +Y+ +L    ++ + +V   T ++ +  IS E L++  ++ L+ TML+D  +E  +                   G      Y  R +     + L  +PCG CP+  EC P GVISP TC Y+ EWL+
Sbjct:   25 SLLSAARSRPGGASDQEIREQIGPSVTPKMRMDAYNHLLQKGRL-VLKRRESDGV-----VLYEEVSAEAAAKLRGLGAEERLVFAAIEKCGNVGIWTRDLRFKSGLQQ-NQFSKVLKTLETRRLVKAVKSVKARNKKFYMLADLAPSKELTGGPWYSDQKEYDTEFIFALYTQLLRFFRSLPHASVQDATRFIENSGISKEKLEREHVQALIDTMLFDGALEAFEDKGSHESFMADALGQSSATGLSKSPRYCVRPSRVHVQSVLAEMPCGLCPLQRECHPGGVISPSTCKYLDEWLD 316          
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A2P6V1J4_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V1J4_9CHLO)

HSP 1 Score: 186 bits (471), Expect = 8.030e-54
Identity = 107/289 (37.02%), Postives = 163/289 (56.40%), Query Frame = 0
Query:    7 RSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRAT-HTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTE 294
            R  +  +L VC+ HP+G+ D  +  +L  DV    R  + N LL + +L++L              +Y+  +  D  +F+GL A + +VY  IQ +G  G+  RDMK RTN+Q P   K I++ L  R LVK +KSVQ  ++KVY+  E+EP+   TGGPW+  +  FD+EF+  +    L ++ +    ++  +  ++ +  IS +AL++ D+ +++ T+ YD  IEQ +  DDG  +YR      P    LTSIPCG CPVF EC   G ISP TC Y ++WLEQ E
Sbjct:    3 RKVEEMVLAVCRKHPEGVADTVLESEL-PDVSVNDRALAINSLLSSMKLQILVNPADPSSH-----IYKASTTGDTARFKGLTAEDMLVYQCIQAAGNIGIWTRDMKQRTNLQQPKVTK-ILKALEERLLVKSVKSVQNASRKVYMLYELEPAKELTGGPWFGPDA-FDSEFVAVLQETTLSYIKSKGQPSLADIVRFIKETGISKQALQEDDVERIINTLEYDGKIEQIE-EDDGDRHYRMMLMRIPESTPLTSIPCGVCPVFSECVEGGKISPATCTYYQDWLEQME 282          
BLAST of Gvermi5147.t1 vs. uniprot
Match: E1Z933_CHLVA (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z933_CHLVA)

HSP 1 Score: 183 bits (465), Expect = 5.670e-53
Identity = 105/286 (36.71%), Postives = 165/286 (57.69%), Query Frame = 0
Query:    7 RSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            R  +  IL VC+ HP+G+ D  +  +L   V    R  + N LL + +L++L              +Y+  ++ DA +F+GL A + +VY  IQ +G  G+  RDMK RTN+Q P ++ +I++ L  R LVK IKSVQ  ++KVY+  E+EP+   TGGPWY  +  FD+EFI  +    + ++ T    T+  +  ++ +  IS +AL++ D+ +++ T+  D  IE  +G +DG  +YR    + P     TSIPCG CPVF+EC   G ISP+TC+Y  +WL+
Sbjct:    3 RKVEELILTVCRKHPEGVQDTALEAEL-PSVAVNDRAVAINSLLASLKLQILVNPADPSSH-----IYKASAVGDATRFKGLTAEDMLVYQCIQGAGNMGIWTRDMKQRTNLQQP-KINKILKTLEERCLVKSIKSVQNASRKVYMLYELEPAKELTGGPWYGPDA-FDSEFITVLQEATMSYINTKGDATLADIVRFIKETGISKQALQEDDVERIINTLECDGKIEGVEGDEDGLPHYRLPLMSIPEATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLD 280          
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A061SD36_9CHLO (DNA-directed RNA polymerase III subunit C34 n=3 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061SD36_9CHLO)

HSP 1 Score: 183 bits (465), Expect = 5.290e-52
Identity = 103/289 (35.64%), Postives = 167/289 (57.79%), Query Frame = 0
Query:    4 PALRSTQTTILRVCQAHPDGLTDGEIVQQL-GKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            P+  + +  I+ +C+ H +GL++  + ++L G D+  K    + N LL+  RL++ K   G        +VY+ + ++DA KF+GL   E +VY +I+++G  G+  +DMKF++N+Q P ++ +I++ L  R LVK ++SV G NKKVY+  E+EPS   TGG WY  EQ+FD+EFIE +       +     VT+  V E++         L++ D+  ++ +++YD  I+  D  DD   +       P  +  TSIPCG CPVF +C PDG ISP  C+Y  +WL+
Sbjct:   86 PSSGTAEQGIIDLCRKHSEGLSEAVLDKELSGFDISAKAA--AINSLLQQQRLQIFKSPDGS-------LVYKEIKVEDAAKFKGLGPQEMLVYQLIKQTGNKGMWTKDMKFQSNLQQP-QITKILKTLEGRNLVKSVRSVTGGNKKVYMLYELEPSRELTGGAWYT-EQKFDSEFIEALREACSQFIHKQGDVTLGDVVEFIHSRGFVKVDLREEDVLSVINSLVYDGRIDSVDDEDDVEHFRPAMLKIPRQSAFTSIPCGVCPVFAQCRPDGPISPAKCIYFDKWLD 363          
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A1Y1IK16_KLENI (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IK16_KLENI)

HSP 1 Score: 177 bits (450), Expect = 1.280e-50
Identity = 107/295 (36.27%), Postives = 163/295 (55.25%), Query Frame = 0
Query:    2 PDPALRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGE----YYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            PD A+   +  I  +CQ    G+T   +  +L  D+  +    + N LL   +L++         T+   + Y+ V+ +D  +FRGL + E +VY +IQ S   G+  RD+K R+N+Q P ++ +I++ L  RRL+K +KSV   N+KVY+  E+EPS   TGG WY  EQEFD EFI  +   V   +     VT++ +  +V     +   L+  D +Q+  T++YD  +E+    D   +    +YR +  + P  N  TSIPCG CPV HECS DG+ISP TCVY +EWL+
Sbjct:    6 PDSAVFRLEEAIANLCQESDGGVTQKMLQDEL-PDIPLEELGSALNVLLSRHQLQMY--------TQASTLYYKPVNQEDRVRFRGLGSEEMLVYQIIQASQNMGIWTRDLKLRSNLQQP-QITKIIKTLEGRRLIKAVKSVASKNRKVYMLYEIEPSREITGGAWYT-EQEFDAEFIGVLREAVKKFVENQGKVTLEEIAAFVKSSGATKVDLRLEDYQQVANTLVYDGEVEEISEFDPDEDADTTFYRMSPMSVPETNAFTSIPCGVCPVLHECSDDGLISPATCVYYQEWLQ 289          
BLAST of Gvermi5147.t1 vs. uniprot
Match: I0Z1U2_COCSC (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0Z1U2_COCSC)

HSP 1 Score: 174 bits (441), Expect = 1.860e-49
Identity = 101/283 (35.69%), Postives = 159/283 (56.18%), Query Frame = 0
Query:   10 QTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHT-PAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            + +IL +C+ HP+GL +  + Q     +    R  + N LL   RL++L+        +   +VYQ V  ++A K +GL A + +VY  I ++G  G+  +D+K RTN+Q P ++ +I++ L  R LVK +KSV   ++KVYI  E+EP+   TGG WY   Q+FD EFI+ +      ++      T++ V ++V     S   L+ +D+  ++ T+ +D ++E      D GE YR A H  P  +  TS+PCG CPV +ECS  GVISP TC Y + WL+
Sbjct:    6 EESILALCRQHPEGLPEAVLEQY----IPATQRTTAMNNLLAKHRLRILQH------PRDNSLVYQEVIQEEAAKLKGLSAEDLLVYQHIAQAGDTGIWTKDLKNRTNLQQP-QITKILKNLDQRSLVKSVKSVINPSRKVYILFELEPARELTGGAWYTG-QDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRTKGFSRVELRDADVLCILRTLEFDGLVES--SLSDDGEVYRPARHVVPKTSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLD 274          
BLAST of Gvermi5147.t1 vs. uniprot
Match: A0A5J4XES7_9CHLO (DNA-directed RNA polymerase III subunit RPC6 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XES7_9CHLO)

HSP 1 Score: 169 bits (429), Expect = 1.290e-47
Identity = 97/286 (33.92%), Postives = 156/286 (54.55%), Query Frame = 0
Query:    6 LRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            + +  T IL + +  P+G+    +  +L        R D+ N LL++ +++L               VY+ V    + + +GL     +VY  I+ +G  GV  +DMKF+TN+Q P ++ +I++ L TR LVK IK V   +KK Y+  ++EP+   TGG WY D Q++D+EFI+ + +     +      T++ V+ ++ D  IS   L+  D+  ++ T+ YD  IE+ D  D    + +     P  +  TSIPCG CPVF+EC+PDG ISP TCVY ++WLE
Sbjct:    1 MEAAMTAILDLFKRMPEGIPQHVVPAELAGTPASVQR-DAVNRLLKDKKIQLQM-----SANDSNTFVYKEVEAGKSARLKGLAPEFLLVYQCIEAAGNTGVWTKDMKFKTNLQQP-QITKILKELETRTLVKAIKPVNQPSKKFYMLYDLEPAREITGGAWYTD-QDYDSEFIQVLQTQCFKFIKQEGDPTLEDVSTFIHDKGISRVQLRDEDVMMILNTLEYDGQIEKIDSPDGEDRFRQALLAIPESSAFTSIPCGVCPVFNECTPDGPISPATCVYFQQWLE 278          
BLAST of Gvermi5147.t1 vs. uniprot
Match: K1RBD0_CRAGI (DNA-directed RNA polymerase III subunit RPC6 n=3 Tax=Crassostrea TaxID=6564 RepID=K1RBD0_CRAGI)

HSP 1 Score: 165 bits (418), Expect = 1.350e-45
Identity = 99/306 (32.35%), Postives = 163/306 (53.27%), Query Frame = 0
Query:   10 QTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELLRNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQRSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKVYIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHM-----------------MTMEYVTVDSVTEYVADLKISHEALKKSDIRQLMMTMLYDSVIE------QCDGRDDGG-EYYRRATHTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLE 291
            +T  + +CQA P+G+TD  I ++L +    K R+   N LL  G++ LLK            ++Y+      A + +G D  E++VY +I+ +G  G+  RD++F+ N+   +++ +I++ L T++L+K +KSV  + KKVY+   +EP  + TGG WY+D Q+F++EF+E +      ++                     +  ++ V +Y++DL IS   L K DI  ++ T++YD  +E      Q     DG  + YR          L  +PCG+CPVF +C   G +SP TCVYMKEWLE
Sbjct:   17 ETRFIMLCQASPEGITDNVIQKELPQ-CDTKQRMTIVNRLLSMGKIDLLKS--------GSKLLYRLKDPDSARQVKGGDNQEKLVYQIIKDAGNKGIWIRDIRFKCNLLL-TQVNKILKNLETKKLIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYSD-QDFESEFVEVLNQQCFKYLEQRAAAAREAKSDPIAQRNASFTPLEDVWKYISDLGISKVQLSKEDIETILNTLIYDGKVERSLVAGQATASGDGYVKLYRSVQPLIPTTGLMRMPCGACPVFDQCYEGGAVSPTTCVYMKEWLE 311          
The following BLAST results are available for this feature:
BLAST of Gvermi5147.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6Q7_9FLOR1.490e-18484.80DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
R7QCX5_CHOCR3.920e-12161.54Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A6T5WUV9_9RHOD1.820e-6036.79DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A2P6V1J4_9CHLO8.030e-5437.02DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
E1Z933_CHLVA5.670e-5336.71DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A061SD36_9CHLO5.290e-5235.64DNA-directed RNA polymerase III subunit C34 n=3 Ta... [more]
A0A1Y1IK16_KLENI1.280e-5036.27DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
I0Z1U2_COCSC1.860e-4935.69DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
A0A5J4XES7_9CHLO1.290e-4733.92DNA-directed RNA polymerase III subunit RPC6 n=1 T... [more]
K1RBD0_CRAGI1.350e-4532.35DNA-directed RNA polymerase III subunit RPC6 n=3 T... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 286..296
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 6..63
e-value: 4.5E-9
score: 37.9
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 64..147
e-value: 3.8E-19
score: 70.2
IPR007832RNA polymerase Rpc34PIRSFPIRSF028763RNAP3_C34/C39coord: 189..294
e-value: 1.5E-21
score: 74.9
coord: 5..192
e-value: 3.3E-36
score: 123.0
IPR007832RNA polymerase Rpc34PFAMPF05158RNA_pol_Rpc34coord: 8..188
e-value: 3.9E-37
score: 128.4
coord: 192..291
e-value: 9.0E-18
score: 64.7
IPR016049RNA polymerase Rpc34-likePANTHERPTHR12780RNA POLYMERASE III DNA DIRECTED , 39KD SUBUNIT-RELATEDcoord: 10..290
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 80..154
IPR036390Winged helix DNA-binding domain superfamilySUPERFAMILY46785"Winged helix" DNA-binding domaincoord: 8..60

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:448743..449633 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5147.t1Gvermi5147.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 448743..449633 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5147.t1 ID=Gvermi5147.t1|Name=Gvermi5147.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=297bp
MPDPALRSTQTTILRVCQAHPDGLTDGEIVQQLGKDVKPKHRLDSYNELL
RNGRLKLLKKVIGEGVTKKEVVVYQWVSLKDAEKFRGLDAAERMVYDMIQ
RSGQNGVTKRDMKFRTNIQNPSELKQIVERLITRRLVKEIKSVQGTNKKV
YIASEVEPSAAHTGGPWYNDEQEFDTEFIETIYSHVLGHMMTMEYVTVDS
VTEYVADLKISHEALKKSDIRQLMMTMLYDSVIEQCDGRDDGGEYYRRAT
HTPAVNHLTSIPCGSCPVFHECSPDGVISPKTCVYMKEWLEQTEDW*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036388WH-like_DNA-bd_sf
IPR007832RNA_pol_Rpc34
IPR016049RNA_pol_Rpc34-like
IPR036390WH_DNA-bd_sf