Gvermi5139.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5139.t1
Unique NameGvermi5139.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length336
Homology
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A2V3J6V6_9FLOR (Splicing factor U2af small subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J6V6_9FLOR)

HSP 1 Score: 331 bits (849), Expect = 5.160e-109
Identity = 167/236 (70.76%), Postives = 192/236 (81.36%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLRPPP----RPDRPHPSEPRAPPADHKRPFRPRDRAPAPHYAARRRDERYRPS---WYDS 229
            MAEHLA+IYGTEKDK+NCPFYFKIGACRHGDRCSRVHHKPLFS T+LLHNLYVSP+QLI++AA+Q LP          +HFEDFY+D++DEL+K GPIDKLYVCENLADHLAGNTYVKF D+ +AQLAL+A+NGR+YAGR V+AEFSPVTDFREGKCRPFE DGQCERGDFCHFLHLR  P    R D  H S  R    +  R +RPRDRAP  +Y  RRR++RYR S   +YD+
Sbjct:    1 MAEHLASIYGTEKDKINCPFYFKIGACRHGDRCSRVHHKPLFSPTLLLHNLYVSPNQLISIAAKQGLPPPVIPQQDIFNHFEDFYWDIYDELAKHGPIDKLYVCENLADHLAGNTYVKFLDEHAAQLALNAINGRYYAGRPVKAEFSPVTDFREGKCRPFERDGQCERGDFCHFLHLRRQPNSAAREDTLHYSARR----EDVRGYRPRDRAPI-YYDGRRREDRYRSSSSAYYDA 231          
BLAST of Gvermi5139.t1 vs. uniprot
Match: R7QB72_CHOCR (Splicing factor U2af small subunit B n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QB72_CHOCR)

HSP 1 Score: 290 bits (741), Expect = 3.830e-94
Identity = 161/271 (59.41%), Postives = 183/271 (67.53%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLRP----------PPRPDR---PHPSEPRAPPADHKRPFRPRDRAPAPHYA----ARRRDERYRPSWYDSREPRHSYERSQ--PYDRYAQRDRER 252
            MAEHL +IYGTEKDKVNCPFY+KIGACRHGDRCSRVH+KPLFS+T+LLHNLY SPDQ+IA AA Q LP          HHF+DFY DV  E+ K GP+D+L VCENLADHLAGNTYVKF D+ SAQ AL+A++GR+YAGR V  EFSPVTDFREGKCRPFE  GQCERGD+CHF+HLR            PRPDR   PH S       D  R + PRD    P Y        RD R  P+ Y  R    S ER +   YD+  +  RER
Sbjct:    1 MAEHLVSIYGTEKDKVNCPFYYKIGACRHGDRCSRVHNKPLFSQTLLLHNLYQSPDQIIASAAAQSLPPPDIPPDDLRHHFDDFYADVLHEMLKHGPVDELRVCENLADHLAGNTYVKFADEESAQNALNALHGRWYAGRPVLVEFSPVTDFREGKCRPFERYGQCERGDYCHFMHLRRHPGGTRPDDHDPRPDRLRYPHSSR------DKYRDYPPRDSRDYPRYQYDDRRSERDRREGPARYRERSRPKSRERGRYSDYDKSYKSTRER 265          
BLAST of Gvermi5139.t1 vs. uniprot
Match: M2XVE9_GALSU (Splicing factor U2AF 35 kDa subunit n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XVE9_GALSU)

HSP 1 Score: 246 bits (628), Expect = 7.190e-77
Identity = 109/178 (61.24%), Postives = 144/178 (80.90%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLR 178
            MAEHLA+I+GTEKD+VNCPFYFKIGACRHG+RCSR+H+KP+FS+TILL N+Y+S DQ+ A A                +HF+DFY DV+DELSK+G I++++VCEN+++HL GN Y+KF D+ +AQ AL AVNGR+YAGR+V AEFSPVTDFRE +CRP+E    C+RGD+C+F+H++
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGERCSRLHNKPVFSQTILLKNMYLSVDQIAAAAIAVGAKPPEMSEEDIKYHFDDFYEDVYDELSKYGEIEEMHVCENMSEHLTGNVYIKFKDEDAAQRALQAVNGRYYAGRMVHAEFSPVTDFREARCRPYERQ-LCDRGDYCNFMHIK 177          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A7S2ZY96_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZY96_9RHOD)

HSP 1 Score: 243 bits (619), Expect = 5.000e-76
Identity = 107/178 (60.11%), Postives = 143/178 (80.34%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLR 178
            MAEHLA+I+GTEKD+VNCPFYFKIGACRHG+RCSR+H+KPLFS+T+LL N+Y+SP+Q+ A AA               +HFEDFY DV +EL+K G ++++++CENL+DHLAGN YVKF D+  AQ AL+AV GR YAGR+++ E+SPVT+FRE +CRP+E    C+RGD+C+F+H+R
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGERCSRMHNKPLFSQTLLLENMYLSPEQIGAAAAAAGKEFPKLSEEAEKYHFEDFYEDVFEELAKHGEVEEMHICENLSDHLAGNAYVKFRDEEGAQAALNAVKGRHYAGRLLKVEYSPVTEFREARCRPYEKK-LCDRGDYCNFMHIR 177          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A7S1XED7_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1XED7_9RHOD)

HSP 1 Score: 224 bits (571), Expect = 2.150e-68
Identity = 101/178 (56.74%), Postives = 131/178 (73.60%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLR 178
            MAEHLAAI+GTEKD+VNCPFYFKIGACRHG+RCSR+H+KP+FS+T+L  N Y+SP+ +   A                 HFE F+ DV  EL++ G I++ +VC+NL+DHL GN YVKF D+  AQ AL  V+GR+Y GR V+ E+SPVTDFRE +CRP E  G C+RGD+C+F+H+R
Sbjct:    1 MAEHLAAIHGTEKDRVNCPFYFKIGACRHGERCSRMHNKPIFSQTLLFENFYLSPEAIAQAAVSAGQHPPKFSEEGAREHFEFFFEDVFSELAEHGEIEEFHVCQNLSDHLNGNVYVKFADEEGAQEALKKVSGRYYCGRPVKVEYSPVTDFREARCRPHER-GTCDRGDYCNFMHIR 177          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A7R9Y1B8_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7R9Y1B8_MICPS)

HSP 1 Score: 221 bits (564), Expect = 3.400e-68
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIAL-AAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLRP 179
            MAEHLA+I+GTEKD+VNCPFYFKIGACRHGDRCSR+H+KP  S+TIL+ N+Y SP+  +A  AA                HFEDFY D+ +EL+ +G I+ L +C+NLADHL GN YVK+ ++ SA  AL+A++GRFYAGR +  EFSPVTDFRE  CR +E +  C RG +C+F+HL+P
Sbjct:   13 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPTLSQTILMSNMYQSPEAAMAAQAATSGAVPEAPDARKMQEHFEDFYEDIFEELATYGEIEGLNICDNLADHLVGNVYVKYREEESALAALNALSGRFYAGRPILCEFSPVTDFRESTCRQYE-ENTCTRGGYCNFMHLKP 191          
BLAST of Gvermi5139.t1 vs. uniprot
Match: C1N5W3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1N5W3_MICPC)

HSP 1 Score: 221 bits (564), Expect = 9.990e-67
Identity = 103/180 (57.22%), Postives = 133/180 (73.89%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIAL-AAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLRP 179
            MAEHLA+I+GTEKD+VNCPFYFKIGACRHGDRCSR+H+KP  S+TIL+ N+Y SP+  +A  AA                HFEDFY D+ +EL+ +G I+ L +C+NLADHL GN YVK+ ++ SA  AL+A++GRFYAGR +  EFSPVTDFRE  CR +E +  C RG +C+F+HL+P
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPTLSQTILMSNMYQSPEAAMAAQAATSGAVPEAPDARKMQEHFEDFYEDIFEELATYGEIEGLNICDNLADHLVGNVYVKYREEESALAALNALSGRFYAGRPILCEFSPVTDFRESTCRQYE-ENTCTRGGYCNFMHLKP 179          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A7S0SNP1_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0SNP1_9CHLO)

HSP 1 Score: 218 bits (556), Expect = 1.110e-66
Identity = 101/180 (56.11%), Postives = 132/180 (73.33%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQR-LPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLRP 179
            MAEHLA I+GTEKD+VNCPFYFKIGACRHGDRCSR+H+KP  S+TIL+ N+Y +P+ + A AA    +            HFEDFY D+ +EL+ FG ++ L VC+NLADHL GN YVK+ ++  A  AL+A++GRFY+GR +  EFSPVTDFRE  CR +E +  C RG +C+F+HL+P
Sbjct:    1 MAEHLAQIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNKPTLSQTILMTNMYQNPEAIAAAAAAAGGVAPAPMDPRQMQEHFEDFYEDIFEELANFGELEGLNVCDNLADHLVGNVYVKYKEEECALAALNALSGRFYSGRPILCEFSPVTDFRESTCRQYE-ENTCTRGGYCNFMHLKP 179          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A2R6WH09_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WH09_MARPO)

HSP 1 Score: 221 bits (563), Expect = 1.290e-66
Identity = 102/178 (57.30%), Postives = 129/178 (72.47%), Query Frame = 0
Query:    1 MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHLR 178
            MAEHLA+I+GTEKD+VNCPFYFKIGACRHGDRCSR+H++P  S+T+LL N+Y SPD        Q              HFEDFY D+ +ELSK+G I+ L VC+NLADH+ GN YVKF ++  A  AL+A+NGRFYAGR +  +FSPVTDFRE  CR +E +  C RG +C+F+HL+
Sbjct:    1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTASQTLLLANMYQSPDAGFHGGVDQHGNIQQSDPRKLQEHFEDFYEDIFEELSKYGEIENLNVCDNLADHMIGNVYVKFREEEHAAAALNALNGRFYAGRPIIVDFSPVTDFREATCRQYE-ENTCNRGGYCNFMHLK 177          
BLAST of Gvermi5139.t1 vs. uniprot
Match: A0A1X6NKM9_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6NKM9_PORUM)

HSP 1 Score: 222 bits (565), Expect = 1.380e-66
Identity = 103/180 (57.22%), Postives = 138/180 (76.67%), Query Frame = 0
Query:    1 MAEHLA---AIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHNLYVSPDQLIALAAQQRLPXXXXXXXXXXHHFEDFYYDVHDELSKFGPIDKLYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVTDFREGKCRPFESDGQCERGDFCHFLHL 177
            MA+HLA   A++GTE+D+VNCPFY+K+GACRHG+RCSR+H+KPL S T+LL N+Y SP Q+ A AA   LP           +F++FY DV  E++K+G +D+L+VCENL+DHLAGNTYVKF ++ SA  AL A+  R+YAGR V+A+ SPVT FRE +CRP+E D  C+RGD+C+F+HL
Sbjct:    1 MAKHLANLVAVHGTERDRVNCPFYYKMGACRHGERCSRLHNKPLSSTTLLLTNMYYSPAQIRATAAAAGLPPPTIPKAEETTYFDNFYVDVWREMAKYGRVDELHVCENLSDHLAGNTYVKFAEEDSAAAALAALESRWYAGRPVKADLSPVTHFREARCRPYEKDA-CDRGDYCNFMHL 179          
The following BLAST results are available for this feature:
BLAST of Gvermi5139.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J6V6_9FLOR5.160e-10970.76Splicing factor U2af small subunit B n=1 Tax=Graci... [more]
R7QB72_CHOCR3.830e-9459.41Splicing factor U2af small subunit B n=1 Tax=Chond... [more]
M2XVE9_GALSU7.190e-7761.24Splicing factor U2AF 35 kDa subunit n=1 Tax=Galdie... [more]
A0A7S2ZY96_9RHOD5.000e-7660.11Hypothetical protein (Fragment) n=1 Tax=Rhodosorus... [more]
A0A7S1XED7_9RHOD2.150e-6856.74Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A7R9Y1B8_MICPS3.400e-6857.22Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
C1N5W3_MICPC9.990e-6757.22Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]
A0A7S0SNP1_9CHLO1.110e-6656.11Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A2R6WH09_MARPO1.290e-6657.30Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A1X6NKM9_PORUM1.380e-6657.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]

Pages

back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009145U2 auxiliary factor small subunitPRINTSPR01848U2AUXFACTORcoord: 18..37
score: 83.18
coord: 37..57
score: 41.77
coord: 78..93
score: 44.32
coord: 133..157
score: 56.18
coord: 106..128
score: 49.01
coord: 169..181
score: 40.56
IPR009145U2 auxiliary factor small subunitPANTHERPTHR12620U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNITcoord: 3..326
IPR000571Zinc finger, CCCH-typeSMARTSM00356c3hfinal6coord: 13..39
e-value: 0.05
score: 22.8
coord: 153..178
e-value: 0.72
score: 17.4
IPR000571Zinc finger, CCCH-typePFAMPF00642zf-CCCHcoord: 14..38
e-value: 1.4E-6
score: 28.1
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 12..40
score: 12.539708
IPR000571Zinc finger, CCCH-typePROSITEPS50103ZF_C3H1coord: 151..179
score: 11.966972
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 43..148
e-value: 4.5E-23
score: 83.5
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 88..142
e-value: 7.8E-6
score: 25.6
IPR000504RNA recognition motif domainPROSITEPS50102RRMcoord: 44..149
score: 10.121413
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 232..335
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 177..217
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 80..152

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:368872..369879 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5139.t1Gvermi5139.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 368872..369879 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5139.t1 ID=Gvermi5139.t1|Name=Gvermi5139.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=336bp
MAEHLAAIYGTEKDKVNCPFYFKIGACRHGDRCSRVHHKPLFSRTILLHN
LYVSPDQLIALAAQQRLPPPVIPPDDIVHHFEDFYYDVHDELSKFGPIDK
LYVCENLADHLAGNTYVKFFDDRSAQLALDAVNGRFYAGRVVRAEFSPVT
DFREGKCRPFESDGQCERGDFCHFLHLRPPPRPDRPHPSEPRAPPADHKR
PFRPRDRAPAPHYAARRRDERYRPSWYDSREPRHSYERSQPYDRYAQRDR
ERYHSRDRDAQMRQDRDRHRNRDRDRDRDRDRDRDKHPDRDRDRDRDRNR
DRDRERDRERDRDRDRDRDRDRDRAYRSSSRDRAL*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009145U2AF_small
IPR000571Znf_CCCH
IPR012677Nucleotide-bd_a/b_plait_sf
IPR000504RRM_dom
IPR035979RBD_domain_sf