Gvermi5090.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi5090.t1
Unique NameGvermi5090.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length163
Homology
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BLAST of Gvermi5090.t1 vs. uniprot
Match: R7QR26_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QR26_CHOCR)

HSP 1 Score: 76.6 bits (187), Expect = 5.500e-14
Identity = 38/101 (37.62%), Postives = 59/101 (58.42%), Query Frame = 0 
Query:    1 MLATPFFAVREVVAASISVDGPVASAMTGGVVGYFGALVTLGPCWKSISRSAMLMGVGCGLVDML------RATVQALEEEQARIALLLQALESVKAGRHV 95
            +   PFFA REV+ A + +DGP+AS + GG+ GY G+L   GP WK++S SAM +G+GCG  D++      +  V  +    A +    + +ES ++G  V
Sbjct:   56 VFTAPFFAFREVLTARLHMDGPMASTIAGGIAGYVGSLFIAGPHWKTVSHSAMAVGIGCGFADIVVSRLDWQRKVYIVNRHDAAVKAAAEQVESKESGASV 156
The following BLAST results are available for this feature:
BLAST of Gvermi5090.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7QR26_CHOCR5.500e-1437.62Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 69..89
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 24..45
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 10..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..23
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..1
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 46..162
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 2..9
NoneNo IPR availableTMHMMTMhelixcoord: 23..45

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_24228contigScGOVlb_24228:99417..101188 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi5090.t1Gvermi5090.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_24228 99417..101188 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi5090.t1 ID=Gvermi5090.t1|Name=Gvermi5090.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=163bp
MLATPFFAVREVVAASISVDGPVASAMTGGVVGYFGALVTLGPCWKSISR
SAMLMGVGCGLVDMLRATVQALEEEQARIALLLQALESVKAGRHVTDVQL
ADATLRSADKLASPCTTSSNPYVQSAKVMANNSPFLYLKRVLQQTLKNAA
FVPVIAAMSLRS*
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