Gvermi4455.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4455.t1
Unique NameGvermi4455.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length410
Homology
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BLAST of Gvermi4455.t1 vs. uniprot
Match: A0A2V3J1U0_9FLOR (Phosphoglucan, water dikinase, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1U0_9FLOR)

HSP 1 Score: 135 bits (341), Expect = 1.080e-32
Identity = 94/269 (34.94%), Postives = 129/269 (47.96%), Query Frame = 0 
Query:  154 TSLLRRFCHSQAVVI--GKLPSLLPKGH--VYVISGDQDVPPYCWHVRCT-LDPGEWPTALALMGFDWRESTVWLLQMQDASDDILVRQLKAVAMMSAPCSVVLLISLSAIAVKVANEVGFSMGVEQHGKPLYLLRKKVRHARWDGTDSPLPGP----------SFDGWVVRFDLDIDEMAGPVRDMLVGGCGKVVGSCKALGEWDIKRGVLLEDACGTLIAEVLVERSEKVEYKYVVENRDGLKVWEEGENRYFPDIDGISIWLEDKW 407
            ++LLRR    Q VV+     P   P+ H  VYV+           +VR     P EWP ALAL  FDWR  + WLL++ + S+  L R LKAVA ++ P SVV+L+SL  +AV +A+  GFS       +P+++L +  R        S L  P          S     VRF L+   +   V   L  G  +VVG  + LG W     + L DA    +AE+L+  S   EYKYV    DG+  WE G+NR  P      + +ED W
Sbjct:   88 SALLRRHATEQTVVMTPDSPPISPPQQHPLVYVVGEGDPFDEQSAYVRVPHSSPSEWPHALALAAFDWRRPSTWLLRLDNVSEPKLARHLKAVATLTPPSSVVILVSLKPLAVDIASSTGFSSHQPDSKQPVFVLHRNQRGVHTADVLSTLVSPATSVSSASTLSDSACFVRFTLEKSSLPASVLHRLPRGSLRVVGEKRQLGVWQPSNALALIDAGDVFVAELLLS-SAHAEYKYVFVGDDGVVEWEAGDNRCLPKPSDRFLSVEDAW 355
The following BLAST results are available for this feature:
BLAST of Gvermi4455.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3J1U0_9FLOR1.080e-3234.94Phosphoglucan, water dikinase, chloroplastic n=1 T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002044Carbohydrate binding module family 20SMARTSM01065CBM_20_2coord: 319..403
e-value: 5.7E-5
score: 32.5
IPR002044Carbohydrate binding module family 20PFAMPF00686CBM_20coord: 332..393
e-value: 8.2E-10
score: 38.4
IPR002044Carbohydrate binding module family 20PROSITEPS51166CBM20coord: 301..409
score: 11.533843
IPR013783Immunoglobulin-like foldGENE3D2.60.40.10Immunoglobulinscoord: 323..407
e-value: 2.2E-12
score: 48.8
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 15..409
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..10
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 11..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
IPR013784Carbohydrate-binding-like foldSUPERFAMILY49452Starch-binding domain-likecoord: 330..394

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:2058152..2059381 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4455.t1Gvermi4455.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 2058152..2059381 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4455.t1 ID=Gvermi4455.t1|Name=Gvermi4455.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=410bp
MRSLLLQGFFRLFGYDFDYDSSYTSLTPQFSEMYEVGSALLVPTPSPQEI
IPPSSTLSHSSKNGNVTDSALAKKKVEFSSEVSLQDDTCFSDDESILSPD
DTSLSDDESILSRSTATSTSELTVERRVVFHTPIDQENNETLDNGESSLE
GTVTSLLRRFCHSQAVVIGKLPSLLPKGHVYVISGDQDVPPYCWHVRCTL
DPGEWPTALALMGFDWRESTVWLLQMQDASDDILVRQLKAVAMMSAPCSV
VLLISLSAIAVKVANEVGFSMGVEQHGKPLYLLRKKVRHARWDGTDSPLP
GPSFDGWVVRFDLDIDEMAGPVRDMLVGGCGKVVGSCKALGEWDIKRGVL
LEDACGTLIAEVLVERSEKVEYKYVVENRDGLKVWEEGENRYFPDIDGIS
IWLEDKWGS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002044CBM_fam20
IPR013783Ig-like_fold
IPR013784Carb-bd-like_fold