Gvermi4337.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4337.t1
Unique NameGvermi4337.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length118
Homology
BLAST of Gvermi4337.t1 vs. uniprot
Match: A0A2V3ILQ6_9FLOR (E3 ubiquitin-protein ligase RBX1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILQ6_9FLOR)

HSP 1 Score: 239 bits (609), Expect = 6.530e-80
Identity = 106/118 (89.83%), Postives = 112/118 (94.92%), Query Frame = 0
Query:    1 MAQAGSSANMEIDTPS-GPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 117
            MA  GS++NM+IDTP+ GPAPR  +EKP+PRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPG EDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR
Sbjct:    1 MANQGSASNMDIDTPATGPAPRAGEEKPKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGSEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 118          
BLAST of Gvermi4337.t1 vs. uniprot
Match: R7QNI1_CHOCR (RING-box protein 1a n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QNI1_CHOCR)

HSP 1 Score: 213 bits (542), Expect = 1.120e-69
Identity = 96/119 (80.67%), Postives = 103/119 (86.55%), Query Frame = 0
Query:    1 MAQAGSSANMEIDT--PSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 117
            MA   ++A MEIDT  P  PA    + KP+PRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQA Q+AP  EDCNVAWGVCNHAFHFHCISRWLKTR+VCPLDNSEW+FQKYGR
Sbjct:    1 MADENATAGMEIDTGAPVQPAASDPENKPKPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQANQSAPPTEDCNVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGR 119          
BLAST of Gvermi4337.t1 vs. uniprot
Match: A0A3B6UA74_WHEAT (RING-type domain-containing protein n=9 Tax=BOP clade TaxID=359160 RepID=A0A3B6UA74_WHEAT)

HSP 1 Score: 189 bits (481), Expect = 2.240e-60
Identity = 84/115 (73.04%), Postives = 91/115 (79.13%), Query Frame = 0
Query:   10 MEIDTPSGPAPRPADE--------KPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 116
            ME D P  P P PA +        KP  RFEIKK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDNSEW+FQKYG
Sbjct:    4 METDAPDAPPPAPAADAGAGSSSRKPGKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYG 118          
BLAST of Gvermi4337.t1 vs. uniprot
Match: A0A7S0T741_9RHOD (Hypothetical protein n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T741_9RHOD)

HSP 1 Score: 186 bits (471), Expect = 8.260e-59
Identity = 78/95 (82.11%), Postives = 87/95 (91.58%), Query Frame = 0
Query:   23 ADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 117
            A EKP+ RFEIKKYNAVALWAWD+VVDNCAICRNHIMD CIECQA Q++   ++C VAWGVCNHAFHFHCISRWLKTR+VCPLDNS+W+FQKYGR
Sbjct:   28 ATEKPKKRFEIKKYNAVALWAWDIVVDNCAICRNHIMDLCIECQANQSSATCDECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSDWEFQKYGR 122          
BLAST of Gvermi4337.t1 vs. uniprot
Match: B4PX22_DROYA (RING-type domain-containing protein n=7 Tax=Endopterygota TaxID=33392 RepID=B4PX22_DROYA)

HSP 1 Score: 185 bits (469), Expect = 1.170e-58
Identity = 78/109 (71.56%), Postives = 89/109 (81.65%), Query Frame = 0
Query:    8 ANMEIDTPSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 116
            +NME+D      P  + +  + RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EWDFQKYG
Sbjct:    2 SNMEVDEEEFEVPSSSSKGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYG 110          
BLAST of Gvermi4337.t1 vs. uniprot
Match: A0A0C2WUH1_9AGAM (RING-type domain-containing protein n=10 Tax=Agaricomycetes incertae sedis TaxID=355688 RepID=A0A0C2WUH1_9AGAM)

HSP 1 Score: 185 bits (469), Expect = 1.290e-58
Identity = 78/113 (69.03%), Postives = 92/113 (81.42%), Query Frame = 0
Query:    8 ANMEIDTPSGPAPRPADEKPR---PRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 117
            A+ME+DTP+     PA +K +   PRFE+KK+NAVALWAWD+VVDNCAICRNHIMD CI+CQA Q +   ++C  AWG+CNHAFHFHCISRWLKTR VCPLDN EW+ QKYGR
Sbjct:    2 ADMEVDTPAATTSGPAGKKKKQDGPRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIDCQANQVSATSDECTAAWGICNHAFHFHCISRWLKTRNVCPLDNREWELQKYGR 114          
BLAST of Gvermi4337.t1 vs. uniprot
Match: I3JP46_ORENI (RING-type domain-containing protein n=9 Tax=Cichlidae TaxID=8113 RepID=I3JP46_ORENI)

HSP 1 Score: 184 bits (468), Expect = 1.470e-58
Identity = 79/110 (71.82%), Postives = 91/110 (82.73%), Query Frame = 0
Query:    7 SANMEIDTPSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 116
            +A M++DTPSG      +   + RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EW+FQKYG
Sbjct:    2 AAAMDVDTPSG-----TNSASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 106          
BLAST of Gvermi4337.t1 vs. uniprot
Match: A0A2A9NR34_9AGAR (RING-type domain-containing protein n=1 Tax=Amanita thiersii Skay4041 TaxID=703135 RepID=A0A2A9NR34_9AGAR)

HSP 1 Score: 185 bits (469), Expect = 1.560e-58
Identity = 79/114 (69.30%), Postives = 90/114 (78.95%), Query Frame = 0
Query:   10 MEIDTPSGPAPRP------ADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYGR 117
            ME+DTP  P  R        + K +PRFE+KK+NAVALWAWD+VVDNCAICRNHIMD CI+CQA Q +   E+CN AWG+CNHAFHFHCISRWLKTR VCPLDN EW+ QKYGR
Sbjct:    7 MEVDTPPQPVKRSIQNMTGTESKNQPRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIDCQANQVSATSEECNAAWGICNHAFHFHCISRWLKTRNVCPLDNREWELQKYGR 120          
BLAST of Gvermi4337.t1 vs. uniprot
Match: B5DKH1_DROPS (RING-box protein 1A n=15 Tax=Drosophila TaxID=7215 RepID=B5DKH1_DROPS)

HSP 1 Score: 184 bits (468), Expect = 1.720e-58
Identity = 78/108 (72.22%), Postives = 88/108 (81.48%), Query Frame = 0
Query:    9 NMEIDTPSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 116
            NME+D      P  + +  + RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EWDFQKYG
Sbjct:    4 NMEVDEEEFEVPSSSSKGEKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWDFQKYG 111          
BLAST of Gvermi4337.t1 vs. uniprot
Match: A4FUL3_DANRE (Rbx1 protein n=40 Tax=Euteleostomi TaxID=117571 RepID=A4FUL3_DANRE)

HSP 1 Score: 184 bits (467), Expect = 2.150e-58
Identity = 82/110 (74.55%), Postives = 93/110 (84.55%), Query Frame = 0
Query:    7 SANMEIDTPSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDNCAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTREVCPLDNSEWDFQKYG 116
            +A M++DTPSG A   A +K   RFE+KK+NAVALWAWD+VVDNCAICRNHIMD CIECQA Q +   E+C VAWGVCNHAFHFHCISRWLKTR+VCPLDN EW+FQKYG
Sbjct:    2 AAAMDVDTPSG-ANSGASKK---RFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEFQKYG 107          
The following BLAST results are available for this feature:
BLAST of Gvermi4337.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3ILQ6_9FLOR6.530e-8089.83E3 ubiquitin-protein ligase RBX1 n=1 Tax=Gracilari... [more]
R7QNI1_CHOCR1.120e-6980.67RING-box protein 1a n=1 Tax=Chondrus crispus TaxID... [more]
A0A3B6UA74_WHEAT2.240e-6073.04RING-type domain-containing protein n=9 Tax=BOP cl... [more]
A0A7S0T741_9RHOD8.260e-5982.11Hypothetical protein n=1 Tax=Erythrolobus madagasc... [more]
B4PX22_DROYA1.170e-5871.56RING-type domain-containing protein n=7 Tax=Endopt... [more]
A0A0C2WUH1_9AGAM1.290e-5869.03RING-type domain-containing protein n=10 Tax=Agari... [more]
I3JP46_ORENI1.470e-5871.82RING-type domain-containing protein n=9 Tax=Cichli... [more]
A0A2A9NR34_9AGAR1.560e-5869.30RING-type domain-containing protein n=1 Tax=Amanit... [more]
B5DKH1_DROPS1.720e-5872.22RING-box protein 1A n=15 Tax=Drosophila TaxID=7215... [more]
A4FUL3_DANRE2.150e-5874.55Rbx1 protein n=40 Tax=Euteleostomi TaxID=117571 Re... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 21..117
e-value: 3.0E-33
score: 115.9
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 49..107
e-value: 2.6E-25
score: 88.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR11210RING BOXcoord: 20..116
NoneNo IPR availablePANTHERPTHR11210:SF45OS01G0106800 PROTEINcoord: 20..116
NoneNo IPR availableCDDcd16485mRING-H2-C3H2C2D_RBX1coord: 49..110
e-value: 2.23079E-40
score: 126.715
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 29..114
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 51..107
score: 9.376395

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1271523..1271957 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4337.t1Gvermi4337.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1271523..1271957 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4337.t1 ID=Gvermi4337.t1|Name=Gvermi4337.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=118bp
MAQAGSSANMEIDTPSGPAPRPADEKPRPRFEIKKYNAVALWAWDMVVDN
CAICRNHIMDACIECQAKQTAPGGEDCNVAWGVCNHAFHFHCISRWLKTR
EVCPLDNSEWDFQKYGR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2
IPR001841Znf_RING