Gvermi4315.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4315.t1
Unique NameGvermi4315.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length401
Homology
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A2V3J3U8_9FLOR (DEAD-box ATP-dependent RNA helicase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3U8_9FLOR)

HSP 1 Score: 201 bits (512), Expect = 3.450e-55
Identity = 115/185 (62.16%), Postives = 133/185 (71.89%), Query Frame = 0
Query:  101 MNSGHSEPNRIQFDLCSAEDDAERSKAGSKLPGEGRKSCLDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVPKAEILIATPGRLVRHFRGMVYEAARDNK 285
            M +G S+  RI FDL S+E   + S   SKL   G KS LDPRL+ VL+SQLGI  +  MQE +L +IL+ +S  RTGDVVLCAPTGSGKTLAYALPIIQDMLDR++ RLRAIVVVPTRDLA QVF+V   LT+ FGI  LC +GSS+ AEEA  +P AEILIATPGRLV H     Y    D K
Sbjct:    1 MKAGMSDVKRILFDLGSSEGIPQNS-GPSKLTPAGTKSILDPRLRKVLSSQLGIQNVLHMQEVVLEYILSTSSRSRTGDVVLCAPTGSGKTLAYALPIIQDMLDRRMPRLRAIVVVPTRDLANQVFTVLSTLTKPFGIFTLCTIGSSAIAEEALAIPNAEILIATPGRLVDHINNGDYLKLSDVK 184          
BLAST of Gvermi4315.t1 vs. uniprot
Match: R7QSB0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSB0_CHOCR)

HSP 1 Score: 135 bits (341), Expect = 2.120e-31
Identity = 71/121 (58.68%), Postives = 91/121 (75.21%), Query Frame = 0
Query:  152 LGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVPKAEILIATPGRLVRH 272
            +GI  +FPMQEA+ S++ + ++    GDV+LCAPTGSGKTLAYALPI+Q ++ RK+ RLRAI+V+PTRDLA QV  VF  LT  FGISV  + G++S   E  ++  AEILIATPGRLV H
Sbjct:    1 MGITSLFPMQEAVFSYLQDASAKRIVGDVILCAPTGSGKTLAYALPIVQGIIGRKLPRLRAIIVLPTRDLATQVAGVFKELTGNFGISVALVSGATSIVVERASLKTAEILIATPGRLVDH 121          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A7S0ZIH6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S0ZIH6_9RHOD)

HSP 1 Score: 105 bits (261), Expect = 7.600e-23
Identity = 65/147 (44.22%), Postives = 89/147 (60.54%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIR-LRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEA-----RNVPK--------AEILIATPGRLVRH 272
            +  R+   L  +L I  +F MQE ++S I+        GDV+L APTGSGKTLAYA+PI+  +L    +R +RA+V++PTRDL  QV +VF AL  K  + V+C+ G +S A EA     R+  K        AEI++ATPGRLV H
Sbjct:   52 ISSRILKNLRKKLKIKTLFSMQETVISRIIQMDKSALLGDVILSAPTGSGKTLAYAIPIVHHLLSVPSLRAVRALVILPTRDLTLQVEAVFEALLHKTPLKVMCLTGQTSFAMEASQLVVRDYSKDSEVYESVAEIIVATPGRLVEH 198          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A5J4YLL8_PORPP (ATP-dependent RNA helicase DDX51 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YLL8_PORPP)

HSP 1 Score: 110 bits (275), Expect = 1.350e-22
Identity = 65/156 (41.67%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLD---------RKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVPKA------------EILIATPGRLVRHFR 274
            LD R++  L  + G+  +F MQ+ +++ +L   ++ ++GDVVLCAPTGSGKTLAYALP++  ++          R+   LRA+V+VPTRDLA QV  V  AL  K G+ V+ + G SS ++EA+ + +A            EI++ATPGRLV H +
Sbjct:   31 LDARVELNLRRKCGVTALFKMQQRVVAHLLRLDAMQQSGDVVLCAPTGSGKTLAYALPLMNCVVTQANSLRCSTRECRTLRALVLVPTRDLALQVVGVLSALAHKTGVRVVAMTGQSSFSQEAKALVEAHPCLPGVFQSATEIIVATPGRLVHHLQ 186          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A7S0ISN9_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0ISN9_9EUKA)

HSP 1 Score: 107 bits (267), Expect = 1.600e-22
Identity = 69/152 (45.39%), Postives = 89/152 (58.55%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTA--EEARNV---------------PKAEILIATPGRLVRHFR 274
            L+ RL   LA ++GI R FP+Q  ++  +L   S G  GDV +CAPTGSGKTLAYALP++Q +L   + RLRA+V+VPTR LA QV SVF  L  +  + V   VG +  +  EE R +                  +ILIATPGRLV H R
Sbjct:  142 LNDRLGAALA-RMGIRRAFPVQATVVPLVLAAHSSGIGGDVCVCAPTGSGKTLAYALPVVQQLLAVVVHRLRALVLVPTRGLALQVHSVFEQLCAELPLRVAVAVGGNEVSWEEERRTLLGDPDELLVGAEHARAAVDILIATPGRLVEHLR 292          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A7S1TIA8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1TIA8_9RHOD)

HSP 1 Score: 106 bits (264), Expect = 1.100e-21
Identity = 63/141 (44.68%), Postives = 82/141 (58.16%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGS----------SSTAEEARNVPKAEILIATPGRLV 270
            +  R++  +    GIHR+F MQEA++   L     G  GDVVL APTGSGKTLAYA+P++Q +  R + RLRA+VVVP RDLAAQV  V + L +   + V C V                 +  +V   +ILIATPGRLV
Sbjct:   23 ISKRVRRNVRKGFGIHRLFAMQEAVIRHCLELDRRGEPGDVVLSAPTGSGKTLAYAIPVVQRLRRRVVPRLRAVVVVPARDLAAQVRQVMVKLVQGTDLEVACSVDEFIPRRTRSFQGDDKNDVASVQTVDILIATPGRLV 163          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A2P6TCX3_CHLSO (DEAD-box ATP-dependent RNA helicase 1 isoform X1 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCX3_CHLSO)

HSP 1 Score: 107 bits (268), Expect = 1.120e-21
Identity = 63/135 (46.67%), Postives = 84/135 (62.22%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVPKA--EILIATPGRLVRH 272
            LDPRL+T L    GI  +FP+Q  + +     AS     DV +CAPTGSGKTL+YALP++Q +  R + RLRA+ V+PTRDLA+QVFSV   L    G++     G +  A EA  +     +IL+ATPGRL+ H
Sbjct:  138 LDPRLKTALEGS-GIEVLFPVQAVVWAQTAGGASAAH--DVCICAPTGSGKTLSYALPVLQALAGRAVPRLRALAVLPTRDLASQVFSVLSTLCPALGLTACLACGKAGLAAEAELLAAGGIDILVATPGRLIAH 269          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A1Y3NCP4_PIRSE (Uncharacterized protein (Fragment) n=1 Tax=Piromyces sp. (strain E2) TaxID=73868 RepID=A0A1Y3NCP4_PIRSE)

HSP 1 Score: 106 bits (265), Expect = 1.590e-21
Identity = 60/134 (44.78%), Postives = 90/134 (67.16%), Query Frame = 0
Query:  150 SQLGIHRIFPMQEALLSFILNQASIGR-TGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSS-TAEEARNVP------KAEILIATPGRLVRHFRG 275
            +Q+ I  +FP+Q ++L F+L+  +  R TGD+ + APTGSGKTLAY LPI++ +  R I RLRA++++PTRDL AQV   F   T+K  + V+ I GS S T+E+++ +       K +++IATPGRL+ H  G
Sbjct:   60 NQMKITHLFPVQTSVLPFLLSTPTSTRMTGDLCVSAPTGSGKTLAYVLPIVETLSKRIIQRLRALIILPTRDLVAQVKETFNYFTQKTNLKVIAITGSISFTSEQSQLIDEKTGNCKVDVVIATPGRLIDHLNG 193          
BLAST of Gvermi4315.t1 vs. uniprot
Match: A0A7S4B177_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B177_CHRCT)

HSP 1 Score: 107 bits (267), Expect = 1.680e-21
Identity = 68/162 (41.98%), Postives = 88/162 (54.32%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVP---------------------------KAEILIATPGRLVRHFR 274
            LD RL   L S++GI R FP+Q  ++  +L  A+    GDV +CAPTGSGKTL YALP++Q +L R + RLRA+V++PTR LAAQVFSVF +L     + V   VG +  + E                                  +ILIATPGRLV H R
Sbjct:   88 LDARLADAL-SRMGITRCFPVQATVIPLVLASAAAHCAGDVCVCAPTGSGKTLGYALPLLQSLLGRVVRRLRALVLLPTRGLAAQVFSVFESLCATLPLRVGIAVGGADVSWETERAALTGDDAHAXXXXXXXXXXXXXXXXGSSAVDILIATPGRLVEHLR 248          
BLAST of Gvermi4315.t1 vs. uniprot
Match: E1ZNU6_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZNU6_CHLVA)

HSP 1 Score: 106 bits (265), Expect = 2.290e-21
Identity = 63/138 (45.65%), Postives = 83/138 (60.14%), Query Frame = 0
Query:  140 LDPRLQTVLASQLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQDMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTAEEARNVPKA--EILIATPGRLVRHFRG 275
            LDPRL+  L    GI  +FP+Q          AS     D+ +CAPTGSGKTL+YALP++Q +  R + RLRA+VV+PTRDLA QVF V   L    G++     G +S A EA+ +     +IL+ATPGRL+ H  G
Sbjct:  145 LDPRLRRALEGT-GIEVLFPVQTVAWRETAGGASPAH--DICICAPTGSGKTLSYALPVLQALSGRAVPRLRALVVLPTRDLAVQVFGVLAGLCPALGLAACLAAGKASLAAEAQLLASGGVDILVATPGRLIAHLEG 279          
The following BLAST results are available for this feature:
BLAST of Gvermi4315.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3U8_9FLOR3.450e-5562.16DEAD-box ATP-dependent RNA helicase 1 n=1 Tax=Grac... [more]
R7QSB0_CHOCR2.120e-3158.68Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A7S0ZIH6_9RHOD7.600e-2344.22Hypothetical protein (Fragment) n=1 Tax=Timspurcki... [more]
A0A5J4YLL8_PORPP1.350e-2241.67ATP-dependent RNA helicase DDX51 n=1 Tax=Porphyrid... [more]
A0A7S0ISN9_9EUKA1.600e-2245.39Hypothetical protein (Fragment) n=1 Tax=Calcidiscu... [more]
A0A7S1TIA8_9RHOD1.100e-2144.68Hypothetical protein (Fragment) n=1 Tax=Compsopogo... [more]
A0A2P6TCX3_CHLSO1.120e-2146.67DEAD-box ATP-dependent RNA helicase 1 isoform X1 n... [more]
A0A1Y3NCP4_PIRSE1.590e-2144.78Uncharacterized protein (Fragment) n=1 Tax=Piromyc... [more]
A0A7S4B177_CHRCT1.680e-2141.98Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
E1ZNU6_CHLVA2.290e-2145.65Uncharacterized protein n=1 Tax=Chlorella variabil... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR014001Helicase superfamily 1/2, ATP-binding domainSMARTSM00487ultradead3coord: 153..341
e-value: 9.3E-17
score: 71.7
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 171..306
score: 16.098581
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 105..296
e-value: 2.2E-36
score: 127.2
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 140..275
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 159..278
e-value: 2.0E-24
score: 86.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 349..366
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 346..379
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 132..303
NoneNo IPR availablePANTHERPTHR24031:SF68ATP-DEPENDENT RNA HELICASE DDX51coord: 132..303
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..400
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:1185987..1190627 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4315.t1Gvermi4315.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 1185987..1190627 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4315.t1 ID=Gvermi4315.t1|Name=Gvermi4315.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=401bp
MTSWGRVVTVLTVLSGAVLIPFKLSEIERYRKISDQAKANASPLMDGSSM
GNEILIASLFDTLMECNPARKQQQWTHQSSIVCPEIHTPYQILNGLAEEM
MNSGHSEPNRIQFDLCSAEDDAERSKAGSKLPGEGRKSCLDPRLQTVLAS
QLGIHRIFPMQEALLSFILNQASIGRTGDVVLCAPTGSGKTLAYALPIIQ
DMLDRKIIRLRAIVVVPTRDLAAQVFSVFMALTEKFGISVLCIVGSSSTA
EEARNVPKAEILIATPGRLVRHFRGMVYEAARDNKKVRTIDMKVQMDDGA
TRALLTQSLAALRRVMDCERFGALAHDESVPRFLLYALNRRATSGASYAE
EDEDEGGEQGGDDGIEQVEEAGERGEDTLHDVLFAQIGRSVARAGGGDDA
*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR014001Helicase_ATP-bd
IPR027417P-loop_NTPase
IPR011545DEAD/DEAH_box_helicase_dom