Gvermi4218.t2 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4218.t2
Unique NameGvermi4218.t2
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length748
Homology
BLAST of Gvermi4218.t2 vs. uniprot
Match: R7Q9H5_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9H5_CHOCR)

HSP 1 Score: 376 bits (966), Expect = 1.090e-115
Identity = 285/788 (36.17%), Postives = 379/788 (48.10%), Query Frame = 0
Query:    1 MSSPRTRSWLFHNQPPDSAHVIQSLLSAPLLLGYVFGS-HNPQQ-HDFPDIGDLNTVFTTDNHTLLGFHFGFQGIQPVIPMLFQVANDPILADPTVIVRRTAMLRYPAA--NCFFQIEMNWCKSGVLAVCTNVCPIHPSGSRPDGLTPFFDNAEFRVFKRCSAQRLAATAAIMADY-SPSASHAADPHPRYAH-----FFDPQDDCYALTICEPDDPVYHT----HLRPVSKRRKPSHPHTFTIQQHMP-------------PHEQSTCAHPSNS---------LSALPRHCDQGERASVAEPHTIALWTAFQNVVAQSRRLGIMHSMLEKRVGGRHGRRVQLFGREACYTFLSTSGINVRGRIHRLCAQIGIHYSGPCTDRFLLQLSRAERDAPPPECARARAHGATQHIDLTEPLSECSADGKRRKLRD-EREPAQA--LRHPAPPHGVRDAPASRALAVVRVERAAHGARGAASXXXXXXXXXXXXXXXXXXXVHHV------ADAGGVSHLGPPFDDVRHAPAGHPRPRPASPHGMENESLVTAAERPERCDKSSNFQVAAPPVHNIGPVTLKRRRSCSVARVSEDSSQSSGSEQPFCQSPPYVSKAAASSANSTSGSDLGFALTGANTDESHRGAGAPAPETDV--TAGRPATT--IWTCEICGVAIRGKKGNLNRHIANKHDNIRAYACQVPSCGKRFQTRLNLVRHEKAVHQGRPYVCHHCPRRFXXDDHLEAHVSSAHEGTSAQLACEVCGGCFGRRSTLNRHLANVHKIHPKTLTSLVS 739
            +++PR R+WLF    P  AHV+Q+LLS+P+L+GYVF   H P + + FPDIGDL+TVF  D   LLGF FGFQG  PV+P+LFQV  DP+L +P VIVR+TA  R P    + +  IE NW +SG L V T++     + + P G   F   +E RVF R SA +L+A    MAD  SP  SHA+ PH    H     F DP DD + L + E DD  YH      L P SK +       F +                   H +ST  H SN          L     HC +G+ +SVAE  T+ LW  +Q  V + RR G + +ML  +VGGR  + V ++GR+A Y FLSTSG+NV GRI +L +Q+ I +  P                P P          T+ ++ ++ LSE   +  +  L   +R  A A  +     P+ V D     A+   R ER A+  R   S                      +       D  GV+ L       RH+      P P     M  +     A+ P +        +    V  I P     R SC +  +  + + S        ++  + + A A+SA  + GS  G       T ++ +       ET    TA R   T  +WTC  CG  IRGKKGNLNRHIANKHDNIRAY C  P+C ++FQTRLNLVRH+ AVH GRPY C       XX          AH+ +   LAC+VCG CFGRRSTLNRH+A VHK+  K   + VS
Sbjct:   38 LNTPRVRAWLFERTAPLKAHVVQALLSSPILVGYVFSDLHIPSRSYSFPDIGDLHTVFCRDGDALLGFSFGFQGRNPVMPLLFQVIRDPMLGNPNVIVRKTAKQRAPRPYQDYYLCIEFNWLESGALGVVTSITSSDSNENTPSGRCSFVLQSEHRVFNRRSAAKLSA----MADQLSPYISHASLPHLSPFHTLPPDFADPPDDYHMLIVKEYDDSDYHALDPLSLNPASKNQVFEVESDFAVPSTAANSXXXXXXXXTNISHTEST--HNSNPTELQGHTPFLGGALLHCHKGDGSSVAEAETVKLWRHYQGAVDKCRRTGNLMTMLGTKVGGRFAKEVPVYGRDARYRFLSTSGVNVHGRIQQLFSQLDIQFGSP---------------HPGPNSKLY-----TRQLECSDSLSEALVEDHKVDLAGGDRSLATAGGMSSGFSPNMVEDFEVVDAVGGTRYERGANERRWGPSSSSDQAVGVQNDREPLHNGDERIRKRRRTTDVNGVTRLSA----SRHSAV----PLPTGFVQMPFQPAQQDADSPRK------MYIKQEQVATILP---SLRNSCDLTNILSNDTLSISVNPAGIENRGWSAAAVATSATLSHGSHGGSKEEPTFTSQAEQNQCTQGVETKAVETAKRDTGTKAVWTCHRCGQKIRGKKGNLNRHIANKHDNIRAYECTRPNCDRKFQTRLNLVRHDTAVHLGRPYTCXXXXXXXXXXXXXXXXXXXAHKNSQLSLACKVCGSCFGRRSTLNRHMAKVHKVEGKVENTGVS 782          
The following BLAST results are available for this feature:
BLAST of Gvermi4218.t2 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R7Q9H5_CHOCR1.090e-11536.17Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 644..669
e-value: 0.0014
score: 27.9
coord: 614..638
e-value: 23.0
score: 10.1
coord: 704..727
e-value: 0.03
score: 23.5
coord: 674..697
e-value: 0.054
score: 22.6
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 674..697
e-value: 8.1E-4
score: 19.7
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 646..669
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 706..727
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 676..697
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 644..674
score: 12.653067
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 704..727
score: 9.99283
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 674..702
score: 10.595541
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 673..727
e-value: 8.0E-12
score: 47.4
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 597..672
e-value: 2.3E-9
score: 39.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..403
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 469..521
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 385..411
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 580..606
NoneNo IPR availablePANTHERPTHR24393ZINC FINGER PROTEINcoord: 235..727
NoneNo IPR availablePANTHERPTHR24393:SF87FI17950P1coord: 235..727
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 33..37
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..20
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 21..32
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..37
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 38..747
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 627..683
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 672..723

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:771022..773265 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4218.t2Gvermi4218.t2Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 771022..773265 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4218.t2 ID=Gvermi4218.t2|Name=Gvermi4218.t2|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=748bp
MSSPRTRSWLFHNQPPDSAHVIQSLLSAPLLLGYVFGSHNPQQHDFPDIG
DLNTVFTTDNHTLLGFHFGFQGIQPVIPMLFQVANDPILADPTVIVRRTA
MLRYPAANCFFQIEMNWCKSGVLAVCTNVCPIHPSGSRPDGLTPFFDNAE
FRVFKRCSAQRLAATAAIMADYSPSASHAADPHPRYAHFFDPQDDCYALT
ICEPDDPVYHTHLRPVSKRRKPSHPHTFTIQQHMPPHEQSTCAHPSNSLS
ALPRHCDQGERASVAEPHTIALWTAFQNVVAQSRRLGIMHSMLEKRVGGR
HGRRVQLFGREACYTFLSTSGINVRGRIHRLCAQIGIHYSGPCTDRFLLQ
LSRAERDAPPPECARARAHGATQHIDLTEPLSECSADGKRRKLRDEREPA
QALRHPAPPHGVRDAPASRALAVVRVERAAHGARGAASSCSAAAAAAAAA
GGGASAAVHHVADAGGVSHLGPPFDDVRHAPAGHPRPRPASPHGMENESL
VTAAERPERCDKSSNFQVAAPPVHNIGPVTLKRRRSCSVARVSEDSSQSS
GSEQPFCQSPPYVSKAAASSANSTSGSDLGFALTGANTDESHRGAGAPAP
ETDVTAGRPATTIWTCEICGVAIRGKKGNLNRHIANKHDNIRAYACQVPS
CGKRFQTRLNLVRHEKAVHQGRPYVCHHCPRRFKTDDHLEAHVSSAHEGT
SAQLACEVCGGCFGRRSTLNRHLANVHKIHPKTLTSLVSPAEPEAPE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf