Gvermi4203.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi4203.t1
Unique NameGvermi4203.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length134
Homology
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A2V3J1A4_9FLOR (Putative DNA-directed RNA polymerases I, II, and III subunit RPABC2 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1A4_9FLOR)

HSP 1 Score: 209 bits (533), Expect = 7.240e-68
Identity = 112/133 (84.21%), Postives = 118/133 (88.72%), Query Frame = 0
Query:    1 MDEDDGDNHMQDYNDDVPEENDYEEDNVDNTREPETVPSKNAPLNATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 133
            M++DDGDN MQDYN DVPE  DY +DN+DN  EPET     AP +A  AEEKITTKFLTKYERARILGTRALQLSMGAPPMVEV+GDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP
Sbjct:    1 MEDDDGDNRMQDYN-DVPE--DYADDNIDNAAEPETGDGGQAPKDAIQAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVMGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 130          
BLAST of Gvermi4203.t1 vs. uniprot
Match: R7QAB3_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QAB3_CHOCR)

HSP 1 Score: 145 bits (367), Expect = 1.410e-42
Identity = 86/134 (64.18%), Postives = 95/134 (70.90%), Query Frame = 0
Query:    1 MDEDDGDNHMQDYNDDVPEENDYEEDNVDNTREPETVPSKNAPLNATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVI-GDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP 133
            M +DDGD  MQDY D+V   ND  E N                      +E+ITT+ LTKYERARILGTRALQLSMGAPPMVE+  G+TDPLVIAKRELQEKKIPITIRRFLPDG+YEDW L +L IPSMG AP
Sbjct:    1 MADDDGDGGMQDYRDEV---NDMPEGNDGIDAMXXXXXXXXXXXXXXXEKERITTRTLTKYERARILGTRALQLSMGAPPMVEIQPGETDPLVIAKRELQEKKIPITIRRFLPDGSYEDWPLDDLTIPSMGQAP 131          
BLAST of Gvermi4203.t1 vs. uniprot
Match: UPI001E1D4A41 (DNA-directed RNA polymerases I, II, and III subunit RPABC2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D4A41)

HSP 1 Score: 130 bits (326), Expect = 4.330e-36
Identity = 70/116 (60.34%), Postives = 84/116 (72.41%), Query Frame = 0
Query:   16 DVPEENDYEEDNVDNTREPETVPSKNAPLNA-------TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQEL 124
            D P+E+  +E N D+  E +    + A   A        P  E+ITT FLTKYERARILGTRALQ+SMGAPPMV V G++DPL+IA +EL EKKIPITIRR+LPDG+YEDWTL EL
Sbjct:   32 DAPDEDFEDEGNADDAVEAQGGEEEGASRVAGAAGGRGVPRSERITTHFLTKYERARILGTRALQISMGAPPMVNVTGESDPLMIAHKELMEKKIPITIRRYLPDGSYEDWTLPEL 147          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A7S0BD28_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0BD28_9RHOD)

HSP 1 Score: 126 bits (317), Expect = 8.410e-35
Identity = 67/108 (62.04%), Postives = 84/108 (77.78%), Query Frame = 0
Query:   19 EENDYEEDNVDNTREPETVPSKNAPLNATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            EE D EE+N D         S+N    A P EE+ TTK++TKYERARILGTRALQ+SMGAP +VE+ G+TDPLVIA++EL+EKKIPIT+RR+LPDG+YEDW + +L I
Sbjct:   49 EEGDGEEENDD---------SEN---RAVPREERTTTKYMTKYERARILGTRALQISMGAPILVELEGETDPLVIAQKELREKKIPITVRRYLPDGSYEDWNVDDLII 144          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A1X6P0J5_PORUM (Uncharacterized protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0J5_PORUM)

HSP 1 Score: 125 bits (313), Expect = 1.940e-34
Identity = 61/103 (59.22%), Postives = 83/103 (80.58%), Query Frame = 0
Query:   25 EDNVDNTREPETVPSKNAPLNAT-PAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            +DNVD+  EPE   ++ +    T P  ++IT +++TKYERAR+LGTRALQ+SMGAP MVE++G+TDPL+IA +EL++KKIPITIRR+LPDG++EDW   EL I
Sbjct:   23 DDNVDDAPEPEGGEARASGSTYTQPNVKRITARYMTKYERARVLGTRALQISMGAPVMVELVGETDPLMIAHKELRQKKIPITIRRYLPDGSFEDWNCSELTI 125          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A7S4B2A3_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B2A3_CHRCT)

HSP 1 Score: 125 bits (314), Expect = 4.410e-34
Identity = 58/82 (70.73%), Postives = 72/82 (87.80%), Query Frame = 0
Query:   46 ATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNIP 127
            ATPA E+ITT ++TK+ERARILGTRALQ+SM AP MVE+ G+TDPL IA +EL+++KIPIT+RRFLPDG+YEDW + EL IP
Sbjct:   60 ATPASERITTPYMTKFERARILGTRALQISMNAPVMVELEGETDPLAIAAKELRKRKIPITVRRFLPDGSYEDWNVDELIIP 141          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A7E4ZZD5_PANRE (RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6233 RepID=A0A7E4ZZD5_PANRE)

HSP 1 Score: 122 bits (306), Expect = 2.370e-33
Identity = 56/84 (66.67%), Postives = 72/84 (85.71%), Query Frame = 0
Query:   43 PLNATPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            P    PAE ++TT F+TKYERARILGTRALQ++MGAP MVE+ G+TDPL IA++EL+E+KIPI IRR+LPDG++EDW + EL+I
Sbjct:   42 PGQQVPAENRVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKEQKIPIIIRRYLPDGSFEDWEIDELHI 125          
BLAST of Gvermi4203.t1 vs. uniprot
Match: D8LZ20_BLAHO (Uncharacterized protein n=2 Tax=Blastocystis TaxID=12967 RepID=D8LZ20_BLAHO)

HSP 1 Score: 117 bits (294), Expect = 4.080e-32
Identity = 57/79 (72.15%), Postives = 64/79 (81.01%), Query Frame = 0
Query:   47 TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELN 125
            TP  E++TT +LTKYERARILGTRALQLSM APPMVEV G TD L IA  EL++KKIP+ IRRFLP G +EDW L ELN
Sbjct:    2 TPISERVTTPYLTKYERARILGTRALQLSMNAPPMVEVNGQTDTLQIALEELRQKKIPLIIRRFLPSGKFEDWRLDELN 80          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A183UQG1_TOXCA (RPB6 homolog n=1 Tax=Toxocara canis TaxID=6265 RepID=A0A183UQG1_TOXCA)

HSP 1 Score: 117 bits (293), Expect = 6.880e-32
Identity = 52/80 (65.00%), Postives = 71/80 (88.75%), Query Frame = 0
Query:   47 TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            T + +++TT F+TKYERARILGTRALQ++MGAP MVE+ G+TDPL IA++EL+++KIPI IRR+LPDG++EDW + ELN+
Sbjct:    6 TASTDRVTTPFMTKYERARILGTRALQIAMGAPVMVELEGETDPLEIARKELKDRKIPIIIRRYLPDGSFEDWGVDELNV 85          
BLAST of Gvermi4203.t1 vs. uniprot
Match: A0A1I8CM57_9BILA (RPB6 homolog n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CM57_9BILA)

HSP 1 Score: 118 bits (295), Expect = 1.140e-31
Identity = 55/80 (68.75%), Postives = 71/80 (88.75%), Query Frame = 0
Query:   47 TPAEEKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQEKKIPITIRRFLPDGTYEDWTLQELNI 126
            T + EKITT F+TKYERARILGTRALQ+++GAP MVE+ G+TDPL IA++EL+E+KIPI IRR+LPDG++EDW + EL+I
Sbjct:   47 TASTEKITTPFMTKYERARILGTRALQIALGAPVMVELEGETDPLEIARKELKEQKIPIIIRRYLPDGSFEDWGVDELHI 126          
The following BLAST results are available for this feature:
BLAST of Gvermi4203.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J1A4_9FLOR7.240e-6884.21Putative DNA-directed RNA polymerases I, II, and I... [more]
R7QAB3_CHOCR1.410e-4264.18Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
UPI001E1D4A414.330e-3660.34DNA-directed RNA polymerases I, II, and III subuni... [more]
A0A7S0BD28_9RHOD8.410e-3562.04Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
A0A1X6P0J5_PORUM1.940e-3459.22Uncharacterized protein n=1 Tax=Porphyra umbilical... [more]
A0A7S4B2A3_CHRCT4.410e-3470.73Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7E4ZZD5_PANRE2.370e-3366.67RPB6 homolog n=1 Tax=Panagrellus redivivus TaxID=6... [more]
D8LZ20_BLAHO4.080e-3272.15Uncharacterized protein n=2 Tax=Blastocystis TaxID... [more]
A0A183UQG1_TOXCA6.880e-3265.00RPB6 homolog n=1 Tax=Toxocara canis TaxID=6265 Rep... [more]
A0A1I8CM57_9BILA1.140e-3168.75RPB6 homolog n=1 Tax=Rhabditophanes sp. KR3021 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6SMARTSM01409RNA_pol_Rpb6_2coord: 52..105
e-value: 1.4E-7
score: 41.2
IPR006110RNA polymerase, subunit omega/Rpo6/RPB6PFAMPF01192RNA_pol_Rpb6coord: 53..105
e-value: 5.7E-15
score: 55.0
IPR036161RPB6/omega subunit-like superfamilyGENE3D3.90.940.10coord: 1..127
e-value: 1.2E-43
score: 150.1
IPR036161RPB6/omega subunit-like superfamilySUPERFAMILY63562RPB6/omega subunit-likecoord: 4..127
IPR028363DNA-directed RNA polymerase, subunit RPB6PIRSFPIRSF500154RPB6coord: 1..128
e-value: 2.9E-46
score: 154.7
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitPIRSFPIRSF000778RpoK/RPB6coord: 1..128
e-value: 1.4E-44
score: 149.0
IPR006111Archaeal Rpo6/eukaryotic RPB6 RNA polymerase subunitHAMAPMF_00192RNApol_arch_Kcoord: 56..111
score: 18.969765
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..48
NoneNo IPR availablePANTHERPTHR47227DNA-DIRECTED RNA POLYMERASE SUBUNIT Kcoord: 12..124
IPR020708DNA-directed RNA polymerase, 14-18kDa subunit, conserved sitePROSITEPS01111RNA_POL_K_14KDcoord: 59..73

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_147contigScGOVlb_147:679604..680184 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi4203.t1Gvermi4203.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_147 679604..680184 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi4203.t1 ID=Gvermi4203.t1|Name=Gvermi4203.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=134bp
MDEDDGDNHMQDYNDDVPEENDYEEDNVDNTREPETVPSKNAPLNATPAE
EKITTKFLTKYERARILGTRALQLSMGAPPMVEVIGDTDPLVIAKRELQE
KKIPITIRRFLPDGTYEDWTLQELNIPSMGSAP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006110Pol_omega/Rpo6/RPB6
IPR036161RPB6/omega-like_sf
IPR028363RPB6
IPR006111Rpo6/Rpb6
IPR020708DNA-dir_RNA_polK_14-18kDa_CS