Gvermi1971.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi1971.t1
Unique NameGvermi1971.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length165
Homology
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A2V3IYF6_9FLOR (Cytochrome b6-f complex iron-sulfur subunit, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IYF6_9FLOR)

HSP 1 Score: 302 bits (773), Expect = 1.380e-102
Identity = 143/164 (87.20%), Postives = 153/164 (93.29%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWWNF 164
            MNLLLAGSTGAVAL VLYPFSYFFVPKSSG AGAG +AKDALGNNIKK +YL SH AGSRELVQGL+GDATYLIVTDDKSDLE++ALNAVCTHLGCVVPWN+AE KFKCPCHGSQY+PTGAVVRGPAPLPLALE VE D+  NVLLKSWKEEDFRTG++PWWNF
Sbjct:   56 MNLLLAGSTGAVALSVLYPFSYFFVPKSSGNAGAGTVAKDALGNNIKKKEYLDSHLAGSRELVQGLRGDATYLIVTDDKSDLEYFALNAVCTHLGCVVPWNKAENKFKCPCHGSQYSPTGAVVRGPAPLPLALEHVEFDEADNVLLKSWKEEDFRTGEAPWWNF 219          
BLAST of Gvermi1971.t1 vs. uniprot
Match: S0F3J4_CHOCR (Rieske domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=S0F3J4_CHOCR)

HSP 1 Score: 282 bits (721), Expect = 1.950e-93
Identity = 133/164 (81.10%), Postives = 146/164 (89.02%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWWNF 164
            MNLLL GST AVALG+L PF++FFVP+SSGG   GVIAKDALG NI+K  YL SH+ GSRELVQGL+GDATYLIVT+DKSD+E+YALNAVCTHLGCVVPWN+AE KF CPCHGSQYAPTGAVVRGPAPLPLALERVE D+ GNV+LKSWKEEDFRTG  PWW F
Sbjct:  141 MNLLLFGSTSAVALGILGPFAFFFVPQSSGGGDGGVIAKDALGTNIQKKAYLDSHNGGSRELVQGLRGDATYLIVTEDKSDIEYYALNAVCTHLGCVVPWNKAENKFMCPCHGSQYAPTGAVVRGPAPLPLALERVEEDEAGNVVLKSWKEEDFRTGGEPWWKF 304          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A1X6PEC0_PORUM (Rieske domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6PEC0_PORUM)

HSP 1 Score: 225 bits (573), Expect = 3.520e-72
Identity = 109/164 (66.46%), Postives = 127/164 (77.44%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWWNF 164
            MNLLL G+ G+VALG L P++YFFVP+S GG+G GV AKDA GN IK+  +L +H   SRELV GLK +AT+LIV D K  +  +A+NAVCTHLGCVVPW  AE KFKCPCHGSQY   G V+RGPAPL LALE V  D  GNV+L SWKEEDFRTG++PWWNF
Sbjct:   56 MNLLLTGAAGSVALGALGPYAYFFVPESGGGSGGGVGAKDAAGNAIKESGWLAAHPTDSRELVLGLKAEATWLIVEDKK--IAPFAINAVCTHLGCVVPWVPAENKFKCPCHGSQYDKQGKVIRGPAPLSLALEHVNVDGDGNVVLSSWKEEDFRTGEAPWWNF 217          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A1X6P412_PORUM (Rieske domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P412_PORUM)

HSP 1 Score: 222 bits (566), Expect = 3.470e-71
Identity = 107/164 (65.24%), Postives = 127/164 (77.44%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWWNF 164
            MNLLLAG+   VAL  L P++YFFVPKS+GG G G+ A+DA G+ +K   YL SH+AGSRELV GL+G+AT+LIV  DK+ LE +ALNAVCTHLGCVVPW  AE KFKCPCHGSQY   G V+RGPAPL LALE V+    G ++L SWK+EDFRTG+ PWW F
Sbjct:   50 MNLLLAGAATTVALAALGPYTYFFVPKSAGGTGGGLAARDAAGSVLKAQPYLASHAAGSRELVLGLQGEATWLIVDTDKA-LEPFALNAVCTHLGCVVPWVPAENKFKCPCHGSQYDRNGKVIRGPAPLSLALEHVDVSGDGEIVLSSWKDEDFRTGEMPWWKF 212          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A7S1THJ4_9RHOD (Hypothetical protein n=1 Tax=Compsopogon caeruleus TaxID=31354 RepID=A0A7S1THJ4_9RHOD)

HSP 1 Score: 222 bits (565), Expect = 6.170e-71
Identity = 101/162 (62.35%), Postives = 126/162 (77.78%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MNLLLAG+ G  A  +L  ++YFF+PK +G  G G++AKDALG ++KK  +L++H  G+R+LV+GLKGDA YLI T+D +D+E+YALNAVCTHLGCVVPWN A+ KF CPCHGSQY  TG V+RGPAPL LAL   E D + NV+LK W EEDFRT  +PWW
Sbjct:   58 MNLLLAGTVGVPATSILAAYAYFFLPKGAGSVGGGLVAKDALGKDVKKAQWLETHPPGTRKLVEGLKGDAYYLITTED-NDIEYYALNAVCTHLGCVVPWNAAQNKFMCPCHGSQYDKTGKVIRGPAPLSLALAHAEVDTSDNVILKPWTEEDFRTNSAPWW 218          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A7S0G3Y7_9RHOD (Hypothetical protein n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G3Y7_9RHOD)

HSP 1 Score: 215 bits (547), Expect = 2.670e-68
Identity = 105/162 (64.81%), Postives = 119/162 (73.46%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MNL+LAG        V+  + YF  P S GGAG G IAKDALGNN+ K +++K+   G+R+LVQGLKGDATYLIV D   DLE Y LNAVCTHLGCVVPWN AEKKFKCPCHGSQY  TG VVRGPAPL LAL  VE   +G V+LK+W E DFRT  +PWW
Sbjct:   50 MNLILAGGVTVPFGSVIGGWLYFLYPPSKGGAGGGSIAKDALGNNVIKAEWIKTQGKGARKLVQGLKGDATYLIVNDAGDDLESYGLNAVCTHLGCVVPWNAAEKKFKCPCHGSQYDKTGKVVRGPAPLSLALAHVEEGGSGEVVLKTWTETDFRTNTAPWW 211          
BLAST of Gvermi1971.t1 vs. uniprot
Match: U9VU44_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=8 Tax=Leptolyngbyaceae TaxID=1890438 RepID=U9VU44_9CYAN)

HSP 1 Score: 210 bits (535), Expect = 6.310e-67
Identity = 100/162 (61.73%), Postives = 116/162 (71.60%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MNLL  G+    ALG LYP   +F+P SSG AG GV AKD LGN++    YL++H AG R LVQGLKGD TYL+VTDD + ++ YA+NAVCTHLGCVVPWN +E KFKCPCHGSQY   G VVRGPAPL LAL +    D   V L  W + DFRTGD+PWW
Sbjct:   19 MNLLTFGAATGTALGALYPIVKYFLPPSSGSAGGGVTAKDELGNDVVAASYLETHGAGDRSLVQGLKGDPTYLVVTDDGT-IDNYAVNAVCTHLGCVVPWNASENKFKCPCHGSQYDAAGKVVRGPAPLSLALAKTSVSDDDKVTLSPWTDTDFRTGDAPWW 179          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A2P8WE35_9CYAN (Cytochrome b6-f complex iron-sulfur subunit n=1 Tax=filamentous cyanobacterium CCP5 TaxID=2107701 RepID=A0A2P8WE35_9CYAN)

HSP 1 Score: 210 bits (535), Expect = 6.310e-67
Identity = 99/162 (61.11%), Postives = 118/162 (72.84%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MNLLL G+ G    G+LYP   +FVP S+GGAG G IAKD +GNN+    +L+SH+ G+RELVQGLKGD TYL+VT+D + L  Y +N+VCTHLGCVVPWN +E KF CPCHGSQY   G VVRGPAPL LAL   +  +TG V L  W E DFRTG+ PWW
Sbjct:   19 MNLLLLGAGGTAVGGMLYPVIRYFVPPSAGGAGGGTIAKDEIGNNVVASQFLESHAPGARELVQGLKGDPTYLVVTEDAT-LASYGINSVCTHLGCVVPWNASENKFICPCHGSQYNAQGKVVRGPAPLSLALAHADVTETGEVSLSPWTETDFRTGEKPWW 179          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A2V0P194_9CHLO (Plastoquinol--plastocyanin reductase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0P194_9CHLO)

HSP 1 Score: 210 bits (534), Expect = 2.150e-66
Identity = 99/162 (61.11%), Postives = 118/162 (72.84%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MNL+L G  GA A G+L  ++ FFVPKS+GG+G G +AKDALGN++K + +L +H  G   LVQGLKGD TYL+VT +   +E Y +NAVCTHLGCVVPW  AE KFKCPCHGSQY  TG  +RGPAPL LAL     DD  NVLL +W E DFRTG+ PWW
Sbjct:   46 MNLILLGGVGAPASGMLGAYALFFVPKSAGGSGGGQVAKDALGNDVKSNAWLATHGKGDHSLVQGLKGDPTYLVVTAE-GKVENYGINAVCTHLGCVVPWVAAENKFKCPCHGSQYDSTGKKIRGPAPLSLALAHANVDDADNVLLSAWTETDFRTGEKPWW 206          
BLAST of Gvermi1971.t1 vs. uniprot
Match: A0A836CBH8_9STRA (Plastoquinol--plastocyanin reductase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBH8_9STRA)

HSP 1 Score: 210 bits (535), Expect = 2.450e-66
Identity = 101/162 (62.35%), Postives = 124/162 (76.54%), Query Frame = 0
Query:    1 MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDDYLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPWNQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWKEEDFRTGDSPWW 162
            MN +LAGS G V LG+  P+  FFVPKS+GGAG GVIA+DA+G ++  + ++ +H  GSRELV+G+KGDATYL V  DK+ ++ + + AVCTHLGCVVPW QAE KF CPCHGSQY   G VVRGPAPL LAL  +ETD TGNV+ K W E DFRTG++PWW
Sbjct:   62 MNAILAGSAGVVVLGLAIPYISFFVPKSAGGAGGGVIARDAVGQDVTVEGWVATHLPGSRELVEGIKGDATYLTVKQDKT-IQDFGIVAVCTHLGCVVPWVQAENKFICPCHGSQYNMDGKVVRGPAPLSLALSHIETD-TGNVVFKPWTETDFRTGEAPWW 221          
The following BLAST results are available for this feature:
BLAST of Gvermi1971.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IYF6_9FLOR1.380e-10287.20Cytochrome b6-f complex iron-sulfur subunit, chlor... [more]
S0F3J4_CHOCR1.950e-9381.10Rieske domain-containing protein n=1 Tax=Chondrus ... [more]
A0A1X6PEC0_PORUM3.520e-7266.46Rieske domain-containing protein n=1 Tax=Porphyra ... [more]
A0A1X6P412_PORUM3.470e-7165.24Rieske domain-containing protein n=1 Tax=Porphyra ... [more]
A0A7S1THJ4_9RHOD6.170e-7162.35Hypothetical protein n=1 Tax=Compsopogon caeruleus... [more]
A0A7S0G3Y7_9RHOD2.670e-6864.81Hypothetical protein n=1 Tax=Rhodosorus marinus Ta... [more]
U9VU44_9CYAN6.310e-6761.73Cytochrome b6-f complex iron-sulfur subunit n=8 Ta... [more]
A0A2P8WE35_9CYAN6.310e-6761.11Cytochrome b6-f complex iron-sulfur subunit n=1 Ta... [more]
A0A2V0P194_9CHLO2.150e-6661.11Plastoquinol--plastocyanin reductase n=1 Tax=Raphi... [more]
A0A836CBH8_9STRA2.450e-6662.35Plastoquinol--plastocyanin reductase n=1 Tax=Tribo... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005805Rieske iron-sulphur protein, C-terminalPRINTSPR00162RIESKEcoord: 86..97
score: 66.04
coord: 119..131
score: 59.62
coord: 107..119
score: 60.19
NoneNo IPR availableGENE3D1.20.5.700Single helix bincoord: 1..26
e-value: 7.4E-9
score: 37.2
NoneNo IPR availablePANTHERPTHR10134:SF38CYTOCHROME B6-F COMPLEX IRON-SULFUR SUBUNITcoord: 1..160
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 3..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..164
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..2
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableCDDcd03471Rieske_cytochrome_b6fcoord: 36..162
e-value: 3.71995E-77
score: 223.781
NoneNo IPR availableTMHMMTMhelixcoord: 3..25
IPR017941Rieske [2Fe-2S] iron-sulphur domainPFAMPF00355Rieskecoord: 69..131
e-value: 1.7E-14
score: 53.5
IPR017941Rieske [2Fe-2S] iron-sulphur domainPROSITEPS51296RIESKEcoord: 54..145
score: 21.821463
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilyGENE3D2.102.10.10coord: 27..164
e-value: 2.9E-47
score: 161.7
IPR036922Rieske [2Fe-2S] iron-sulphur domain superfamilySUPERFAMILY50022ISP domaincoord: 5..163
IPR014349Rieske iron-sulphur proteinPANTHERPTHR10134CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIALcoord: 1..160

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2576562..2577056 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1Gvermi1971.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_1622 2576562..2577056 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=165bp
MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDD
YLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPW
NQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWK
EEDFRTGDSPWWNF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005805Rieske_Fe-S_prot_C
IPR017941Rieske_2Fe-2S
IPR036922Rieske_2Fe-2S_sf
IPR014349Rieske_Fe-S_prot