Gvermi1971.t1 (mRNA) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGvermi1971.t1
Unique NameGvermi1971.t1
TypemRNA
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_1622contigScGOVlb_1622:2576562..2577056 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1385935.N836_08230
Preferred namepetC
PFAMsCytB6-F_Fe-S,Rieske
Max annot lvl1117|Cyanobacteria
KEGG rclassRC01002
KEGG koko:K02636
KEGG ReactionR03817,R08409
KEGG Pathwayko00195,ko01100,map00195,map01100
KEGG ModuleM00162
Evalue1.91e-68
EggNOG OGsCOG0723@1|root,COG0723@2|Bacteria,1G03Q@1117|Cyanobacteria,1H9D7@1150|Oscillatoriales
EC1.10.9.1
DescriptionComponent of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions
COG categoryC
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi1971Gvermi1971Gracilaria vermiculophylla HapMaleFtJ_2017 malegeneScGOVlb_1622 2576562..2577056 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1.stop1Gvermi1971.t1.stop1Gracilaria vermiculophylla HapMaleFtJ_2017 malestop_codonScGOVlb_1622 2576562..2576564 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1.CDS1Gvermi1971.t1.CDS1Gracilaria vermiculophylla HapMaleFtJ_2017 maleCDSScGOVlb_1622 2576562..2577056 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1.exon1Gvermi1971.t1.exon1Gracilaria vermiculophylla HapMaleFtJ_2017 maleexonScGOVlb_1622 2576562..2577056 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1.start1Gvermi1971.t1.start1Gracilaria vermiculophylla HapMaleFtJ_2017 malestart_codonScGOVlb_1622 2577054..2577056 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gvermi1971.t1Gvermi1971.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malepolypeptideScGOVlb_1622 2576562..2577056 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=165bp
MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDD
YLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPW
NQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWK
EEDFRTGDSPWWNF*
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spliced messenger RNA

>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp|location=Sequence derived from alignment at ScGOVlb_1622:2576562..2577056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAACCTTCTTCTGGCCGGCAGCACAGGCGCTGTCGCCCTGGGCGTGCT
CTACCCCTTCTCCTACTTCTTCGTCCCCAAGTCCTCTGGCGGCGCCGGAG
CCGGCGTCATCGCCAAGGACGCCCTGGGCAACAACATCAAGAAGGACGAC
TACCTCAAGTCCCACTCCGCGGGCTCCCGCGAATTGGTACAGGGCTTGAA
GGGCGATGCCACGTACCTCATCGTCACCGACGACAAGTCGGACCTCGAAT
TCTATGCCCTCAACGCTGTCTGCACTCACCTCGGATGCGTCGTGCCCTGG
AACCAGGCCGAGAAGAAGTTCAAGTGCCCGTGCCACGGTTCGCAGTACGC
CCCGACAGGCGCCGTCGTTCGGGGACCCGCCCCGCTCCCGCTCGCCCTTG
AGCGCGTGGAAACTGACGACACCGGCAACGTCCTCCTCAAGAGTTGGAAG
GAAGAGGACTTCCGCACAGGCGACTCACCATGGTGGAACTTCTAA
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protein sequence of Gvermi1971.t1

>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=165bp
MNLLLAGSTGAVALGVLYPFSYFFVPKSSGGAGAGVIAKDALGNNIKKDD
YLKSHSAGSRELVQGLKGDATYLIVTDDKSDLEFYALNAVCTHLGCVVPW
NQAEKKFKCPCHGSQYAPTGAVVRGPAPLPLALERVETDDTGNVLLKSWK
EEDFRTGDSPWWNF*
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mRNA from alignment at ScGOVlb_1622:2576562..2577056-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=mRNA|length=495bp|location=Sequence derived from alignment at ScGOVlb_1622:2576562..2577056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCTTCTTCTGGCCGGCAGCACAGGCGCTGTCGCCCTGGGCGTGCT
CTACCCCTTCTCCTACTTCTTCGTCCCCAAGTCCTCTGGCGGCGCCGGAG
CCGGCGTCATCGCCAAGGACGCCCTGGGCAACAACATCAAGAAGGACGAC
TACCTCAAGTCCCACTCCGCGGGCTCCCGCGAATTGGTACAGGGCTTGAA
GGGCGATGCCACGTACCTCATCGTCACCGACGACAAGTCGGACCTCGAAT
TCTATGCCCTCAACGCTGTCTGCACTCACCTCGGATGCGTCGTGCCCTGG
AACCAGGCCGAGAAGAAGTTCAAGTGCCCGTGCCACGGTTCGCAGTACGC
CCCGACAGGCGCCGTCGTTCGGGGACCCGCCCCGCTCCCGCTCGCCCTTG
AGCGCGTGGAAACTGACGACACCGGCAACGTCCTCCTCAAGAGTTGGAAG
GAAGAGGACTTCCGCACAGGCGACTCACCATGGTGGAACTTCTAA
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Coding sequence (CDS) from alignment at ScGOVlb_1622:2576562..2577056-

>Gvermi1971.t1 ID=Gvermi1971.t1|Name=Gvermi1971.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=CDS|length=495bp|location=Sequence derived from alignment at ScGOVlb_1622:2576562..2577056- (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
ATGAACCTTCTTCTGGCCGGCAGCACAGGCGCTGTCGCCCTGGGCGTGCT
CTACCCCTTCTCCTACTTCTTCGTCCCCAAGTCCTCTGGCGGCGCCGGAG
CCGGCGTCATCGCCAAGGACGCCCTGGGCAACAACATCAAGAAGGACGAC
TACCTCAAGTCCCACTCCGCGGGCTCCCGCGAATTGGTACAGGGCTTGAA
GGGCGATGCCACGTACCTCATCGTCACCGACGACAAGTCGGACCTCGAAT
TCTATGCCCTCAACGCTGTCTGCACTCACCTCGGATGCGTCGTGCCCTGG
AACCAGGCCGAGAAGAAGTTCAAGTGCCCGTGCCACGGTTCGCAGTACGC
CCCGACAGGCGCCGTCGTTCGGGGACCCGCCCCGCTCCCGCTCGCCCTTG
AGCGCGTGGAAACTGACGACACCGGCAACGTCCTCCTCAAGAGTTGGAAG
GAAGAGGACTTCCGCACAGGCGACTCACCATGGTGGAACTTCTAA
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