Gvermi13684.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi13684.t1
Unique NameGvermi13684.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length161
Homology
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A1C8XS06_9FLOR (Cytochrome b6-f complex subunit 4 n=23 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A1C8XS06_9FLOR)

HSP 1 Score: 310 bits (794), Expect = 9.600e-107
Identity = 147/159 (92.45%), Postives = 156/159 (98.11%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLA+LEPTG+GE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGV+SMA+VP GLIT+PFIE+INKFQNPFRRPIATT+F+I TLITVWLGIGATMPLS+AITLGI
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAILEPTGIGETANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVMSMASVPVGLITIPFIENINKFQNPFRRPIATTIFLISTLITVWLGIGATMPLSKAITLGI 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A0B5W311_9FLOR (Cytochrome b6-f complex subunit 4 n=4 Tax=Ceramiales TaxID=2802 RepID=A0A0B5W311_9FLOR)

HSP 1 Score: 305 bits (780), Expect = 1.310e-104
Identity = 147/159 (92.45%), Postives = 154/159 (96.86%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDL DPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC+VGLAVLEP GLGE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLI VPF+E+INKFQNPFRRPIATTVFII T+ITVWLGIGAT+PLS+AITLG+
Sbjct:    1 MSIIKKPDLADPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACSVGLAVLEPMGLGEAANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLIIVPFVENINKFQNPFRRPIATTVFIISTVITVWLGIGATLPLSDAITLGL 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A4D6WYT0_9FLOR (Cytochrome b6-f complex subunit 4 n=3 Tax=Ceramiales TaxID=2802 RepID=A0A4D6WYT0_9FLOR)

HSP 1 Score: 303 bits (776), Expect = 5.330e-104
Identity = 143/159 (89.94%), Postives = 155/159 (97.48%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDLTDPKLRAKLAKGMGH+YYGEPAWPNDLLY+FP VILGTIACNVGLA+LEPTG+GE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMA+VP GLI++PFIE+INKFQNPFRRPIATTVF+IGT I++WLGIGATMPLS+AITLGI
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPTVILGTIACNVGLAILEPTGIGEVANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPLGLISIPFIENINKFQNPFRRPIATTVFLIGTFISIWLGIGATMPLSKAITLGI 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A1Z1M649_9FLOR (Cytochrome b6-f complex subunit 4 n=4 Tax=Ceramiales TaxID=2802 RepID=A0A1Z1M649_9FLOR)

HSP 1 Score: 303 bits (776), Expect = 5.330e-104
Identity = 143/160 (89.38%), Postives = 155/160 (96.88%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGII 160
            MSIIKKPDLT+PKLRAKLAKGMGHNYYGEPAWPNDLLYIFP+VILGTIAC+VGLA+LEP G+GE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMA+VP GLI VPF+E+INKFQNPFRRPIATTVF++GT IT+WLGIGATMPLS+AITLGII
Sbjct:    1 MSIIKKPDLTNPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPIVILGTIACSVGLAILEPMGIGETANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPVGLIAVPFLENINKFQNPFRRPIATTVFLLGTFITIWLGIGATMPLSKAITLGII 160          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A1C9C7T5_RHOPU (Cytochrome b6-f complex subunit 4 n=54 Tax=Florideophyceae TaxID=2806 RepID=A0A1C9C7T5_RHOPU)

HSP 1 Score: 300 bits (769), Expect = 6.230e-103
Identity = 143/159 (89.94%), Postives = 156/159 (98.11%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDLTDPKLRAKLAKGMGH+YYGEPAWPNDLLY+FPVVILGTIAC+VGL++LEP+ +GE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMA+VPAGLITVPFIESINKFQNPFRRPIATTVF+IGT I++WLGIGATMPLS+AITLG+
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPVVILGTIACDVGLSILEPSVIGEIANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPAGLITVPFIESINKFQNPFRRPIATTVFLIGTFISIWLGIGATMPLSKAITLGL 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A4D6X1M5_9FLOR (Cytochrome b6-f complex subunit 4 n=39 Tax=Rhodymeniophycidae TaxID=2045261 RepID=A0A4D6X1M5_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 6.230e-103
Identity = 141/160 (88.12%), Postives = 154/160 (96.25%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGII 160
            MSIIKKPDLTDPKLRAKLAKGMGH+YYGEPAWPNDLLY+FPV ILGTIAC+VGL++LEPTG+GE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSM +VP GLI +PFIE+INKFQNPFRRPIATT+F+IGT IT+WLGIGATMPLS+AITLGII
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDLLYMFPVTILGTIACDVGLSILEPTGIGEIANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMGSVPLGLIAIPFIENINKFQNPFRRPIATTIFLIGTFITIWLGIGATMPLSQAITLGII 160          
BLAST of Gvermi13684.t1 vs. uniprot
Match: PETD_PORPU (Cytochrome b6-f complex subunit 4 n=13 Tax=Bangiaceae TaxID=31345 RepID=PETD_PORPU)

HSP 1 Score: 300 bits (767), Expect = 1.260e-102
Identity = 137/159 (86.16%), Postives = 155/159 (97.48%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSI+KKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLY+FPVVILGTIAC++GLA+LEP+ LGE +NPFATPLEILPEWYFFPTFNLLRVIPNKL+GVLSMAAVPAGL+TVPFIE++NKFQNPFRRPIATT+F+I T+IT+WLGIGATMP++ AITLG+
Sbjct:    1 MSILKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYVFPVVILGTIACSIGLAILEPSSLGEKSNPFATPLEILPEWYFFPTFNLLRVIPNKLLGVLSMAAVPAGLLTVPFIENVNKFQNPFRRPIATTIFLISTVITIWLGIGATMPINNAITLGL 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: PETD_GRATL (Cytochrome b6-f complex subunit 4 n=35 Tax=Rhodymeniophycidae TaxID=2045261 RepID=PETD_GRATL)

HSP 1 Score: 298 bits (763), Expect = 5.120e-102
Identity = 137/159 (86.16%), Postives = 156/159 (98.11%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDLTDPKLRAKLAKGMGH+YYGEPAWPND+LY+FPVVILG +AC+VGL++LEP+ +GEPANPFATPLEILPEWYFFPTFNLLRVIPNKL+GVLSMA+VPAGLITVPFIES+NKFQNPFRRPIAT+VF++GT++ VWLGIGATMPLS+AITLG+
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDILYMFPVVILGILACDVGLSILEPSVIGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLVGVLSMASVPAGLITVPFIESVNKFQNPFRRPIATSVFLVGTIVAVWLGIGATMPLSKAITLGL 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: M5DER2_CHOCR (Cytochrome b6-f complex subunit 4 n=2 Tax=Gigartinaceae TaxID=29217 RepID=M5DER2_CHOCR)

HSP 1 Score: 292 bits (747), Expect = 1.410e-99
Identity = 135/159 (84.91%), Postives = 153/159 (96.23%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGI 159
            MSIIKKPDLTDPKLRAKLAKGMGH+YYGEPAWPND+ Y+FPVVIL TIAC+VGL++LEP+ LGE ANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMA+VP GLIT+PF+ESINKFQNPFRRPIAT+VF+IGT +++WLGIGATMPLS+A+TLG+
Sbjct:    1 MSIIKKPDLTDPKLRAKLAKGMGHHYYGEPAWPNDIFYMFPVVILATIACDVGLSILEPSVLGEKANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPFGLITIPFVESINKFQNPFRRPIATSVFLIGTFVSIWLGIGATMPLSKALTLGV 159          
BLAST of Gvermi13684.t1 vs. uniprot
Match: A0A1C9CG81_9FLOR (Cytochrome b6-f complex subunit 4 n=2 Tax=Hildenbrandia TaxID=31479 RepID=A0A1C9CG81_9FLOR)

HSP 1 Score: 291 bits (746), Expect = 2.000e-99
Identity = 136/160 (85.00%), Postives = 153/160 (95.62%), Query Frame = 0
Query:    1 MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMPLSEAITLGII 160
            MSI+K P+LTDP+LRAKLAKGMGH YYGEPAWPNDLLYIFPVVILGTIAC VGLA+LEP+ +GE A+PFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMA+VPAGLITVPFIE++NKFQNPFRRP+A+TVF+IGT +++WLGIGATMPL +AITLGII
Sbjct:    1 MSILKMPNLTDPQLRAKLAKGMGHQYYGEPAWPNDLLYIFPVVILGTIACTVGLAILEPSAIGEKADPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLSMASVPAGLITVPFIENVNKFQNPFRRPLASTVFLIGTFVSIWLGIGATMPLPQAITLGII 160          
The following BLAST results are available for this feature:
BLAST of Gvermi13684.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1C8XS06_9FLOR9.600e-10792.45Cytochrome b6-f complex subunit 4 n=23 Tax=Rhodyme... [more]
A0A0B5W311_9FLOR1.310e-10492.45Cytochrome b6-f complex subunit 4 n=4 Tax=Ceramial... [more]
A0A4D6WYT0_9FLOR5.330e-10489.94Cytochrome b6-f complex subunit 4 n=3 Tax=Ceramial... [more]
A0A1Z1M649_9FLOR5.330e-10489.38Cytochrome b6-f complex subunit 4 n=4 Tax=Ceramial... [more]
A0A1C9C7T5_RHOPU6.230e-10389.94Cytochrome b6-f complex subunit 4 n=54 Tax=Floride... [more]
A0A4D6X1M5_9FLOR6.230e-10388.13Cytochrome b6-f complex subunit 4 n=39 Tax=Rhodyme... [more]
PETD_PORPU1.260e-10286.16Cytochrome b6-f complex subunit 4 n=13 Tax=Bangiac... [more]
PETD_GRATL5.120e-10286.16Cytochrome b6-f complex subunit 4 n=35 Tax=Rhodyme... [more]
M5DER2_CHOCR1.410e-9984.91Cytochrome b6-f complex subunit 4 n=2 Tax=Gigartin... [more]
A0A1C9CG81_9FLOR2.000e-9985.00Cytochrome b6-f complex subunit 4 n=2 Tax=Hildenbr... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005870Cytochrome b6/f complex, subunit IVPIRSFPIRSF000033Cytochrome_b6f_IVcoord: 1..160
e-value: 6.5E-95
score: 312.8
IPR005870Cytochrome b6/f complex, subunit IVTIGRFAMTIGR01156TIGR01156coord: 1..159
e-value: 8.8E-93
score: 306.4
IPR005870Cytochrome b6/f complex, subunit IVHAMAPMF_01344Cytb6_f_subIVcoord: 1..160
score: 44.086456
NoneNo IPR availableGENE3D1.10.287.980plastocyanin oxidoreductasecoord: 67..159
e-value: 1.3E-27
score: 97.7
NoneNo IPR availableGENE3D1.20.5.510Single helix bincoord: 9..66
e-value: 2.6E-38
score: 131.5
NoneNo IPR availablePANTHERPTHR19271:SF22CYTOCHROME B6/F COMPLEX, SUBUNIT IV-RELATEDcoord: 2..150
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 2..150
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 36..57
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..160
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..35
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 126..145
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 58..94
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 95..114
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 115..125
NoneNo IPR availableTMHMMTMhelixcoord: 36..58
NoneNo IPR availableTMHMMTMhelixcoord: 129..151
NoneNo IPR availableTMHMMTMhelixcoord: 95..117
IPR005798Cytochrome b/b6, C-terminalPFAMPF00032Cytochrom_B_Ccoord: 65..155
e-value: 9.7E-19
score: 67.5
IPR005798Cytochrome b/b6, C-terminalPROSITEPS51003CYTB_CTERcoord: 65..160
score: 15.899558
IPR005798Cytochrome b/b6, C-terminalCDDcd00290cytochrome_b_Ccoord: 14..148
e-value: 2.51119E-52
score: 161.66
IPR036150Cytochrome b/b6, C-terminal domain superfamilySUPERFAMILY81648a domain/subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 6..155

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_59contigScGOVlb_59:137956..138438 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi13684.t1Gvermi13684.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_59 137956..138438 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi13684.t1 ID=Gvermi13684.t1|Name=Gvermi13684.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=161bp
MSIIKKPDLTDPKLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIAC
NVGLAVLEPTGLGEPANPFATPLEILPEWYFFPTFNLLRVIPNKLIGVLS
MAAVPAGLITVPFIESINKFQNPFRRPIATTVFIIGTLITVWLGIGATMP
LSEAITLGII*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR005870Cyt_b6/f_cplx_suIV
IPR005798Cyt_b/b6_C
IPR036150Cyt_b/b6_C_sf