Gvermi12999.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12999.t1
Unique NameGvermi12999.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length63
Homology
[Close]
BLAST of Gvermi12999.t1 vs. uniprot
Match: A0A7R9W8A7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W8A7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 2.710e-7
Identity = 27/38 (71.05%), Postives = 29/38 (76.32%), Query Frame = 0 
Query:   21 AKKKNRNVPHGHFGKLKPYQPGPFDV-KLTSAEEAKLS 57
            AKK NRN PH H GKLKPY PGPFDV  LTS +EA L+
Sbjct:   17 AKKINRNAPHEHRGKLKPYAPGPFDVLSLTSRDEADLA 54
The following BLAST results are available for this feature:
BLAST of Gvermi12999.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7R9W8A7_9STRA2.710e-771.05Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 22..63
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..21
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..17

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_7218contigScGOVlb_7218:1..187 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12999.t1Gvermi12999.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_7218 1..187 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12999.t1 ID=Gvermi12999.t1|Name=Gvermi12999.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=63bp
MLHLVRFAFAFLAVAAVCCSAKKKNRNVPHGHFGKLKPYQPGPFDVKLTS
AEEAKLSAGSPVX
back to top