Gvermi12933.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12933.t1
Unique NameGvermi12933.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length172
Homology
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2V3IXN5_9FLOR (Putative germin-like protein 2-3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IXN5_9FLOR)

HSP 1 Score: 184 bits (468), Expect = 9.120e-57
Identity = 95/168 (56.55%), Postives = 115/168 (68.45%), Query Frame = 0
Query:    4 KTIPTFIVLLLAVF-SSALGSIPSFGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPVS 170
            K+I     L LAVF + A  SIPSFG Q+   IR  L D +F INP++G I +TP F V++A + +FPAL GQDVQ+Q  RV ++A QPF PHYHPRG E L  L G  R SF  EGL PR VTN L+ G+STVFP  L H+  CIS +DC F+S FNSADPGLVPV+
Sbjct:    2 KSIIALTALTLAVFVNQAAASIPSFGLQSAAGIRSGLQDSDFRINPSKGQIINTPGFTVQIANVADFPALGGQDVQSQIVRVLVRAGQPFIPHYHPRGTETLNALAGVFRVSFLSEGLSPRNVTNILHPGDSTVFPQGLPHETVCISKMDCLFLSVFNSADPGLVPVT 169          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2V3IWG7_9FLOR (Spherulin-1B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IWG7_9FLOR)

HSP 1 Score: 179 bits (454), Expect = 1.220e-54
Identity = 94/168 (55.95%), Postives = 110/168 (65.48%), Query Frame = 0
Query:    4 KTIPTFIVLLLAVF-SSALGSIPSFGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPVS 170
            K I     L LA F + A  SIPSFG QT  AIR  L D +F INP++G I     F V++A + +FPAL GQDVQ+Q  RV ++A QPF PHYHPRG E L  L G  R SF FEGL PR VTN L  G+STVFP  L H  +CIS  DC F+S FN+ADPGLVPV+
Sbjct:    2 KCIIALAALTLAAFVNQAAASIPSFGLQTAAAIRSGLQDSDFRINPSKGQIIKNEKFVVQIANVADFPALGGQDVQSQVARVLVRAGQPFLPHYHPRGTETLNALAGVFRVSFLFEGLNPRNVTNILRPGDSTVFPQGLPHATTCISKTDCLFLSVFNTADPGLVPVN 169          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2V3IBZ5_9FLOR (Cupin type-1 domain-containing protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBZ5_9FLOR)

HSP 1 Score: 124 bits (312), Expect = 4.830e-33
Identity = 68/131 (51.91%), Postives = 80/131 (61.07%), Query Frame = 0
Query:    4 KTIPTFIVLLLAVF-SSALGSIPSFGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGE 133
            K I     L LA F + A  SIPSFG QT  AIR  L D +F INP++G I     F V++A + +FPAL GQDVQ+Q  RV ++A QPF PHYH  G E L  L G  R SF FEGL PR VTN L  G+
Sbjct:    2 KCIIALAALTLAAFVNQAAASIPSFGLQTAAAIRSGLQDSDFRINPSKGQIIKNEKFVVQIANVADFPALGGQDVQSQVARVLVRAGQPFLPHYHRAGTETLNALAGVFRVSFLFEGLSPRNVTNILRPGD 132          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2V3IBT1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IBT1_9FLOR)

HSP 1 Score: 102 bits (254), Expect = 9.400e-24
Identity = 50/98 (51.02%), Postives = 62/98 (63.27%), Query Frame = 0
Query:   25 PSFGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEP 122
            P F +     IR  L D +F INP++G I +T  F V++A + +FPAL GQDVQ+Q  RV ++A QPF PHYHPRG E L  L G  R SF  EGL P
Sbjct:  136 PQFRSAIRPGIRSGLQDSDFRINPSKGQIINT-GFTVQIANVADFPALGGQDVQSQIVRVLVRAGQPFIPHYHPRGTETLNALAGVFRVSFLSEGLSP 232          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A1X6P019_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P019_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 4.180e-14
Identity = 49/144 (34.03%), Postives = 67/144 (46.53%), Query Frame = 0
Query:   27 FGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPVS 170
            F T+ N  +R     ++F +  A+   T TP   +    L N        V + FTR T++       H HP  +E L  + GT+   F      PR+V + L     TVFP  L H   CIS   CEF+S FN+ DPG+V VS
Sbjct:   43 FTTEEN--LRANFDAEDFSVAIADITPTTTPQGAIVSGGLENLAVFGLSSVDSSFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPEGLIHGERCISDEPCEFISFFNTGDPGVVTVS 184          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A1X6P0A0_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0A0_PORUM)

HSP 1 Score: 77.8 bits (190), Expect = 6.150e-14
Identity = 49/144 (34.03%), Postives = 67/144 (46.53%), Query Frame = 0
Query:   27 FGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPVS 170
            F T+ N  +R     ++F +  A+   T TP   +    L N        V + FTR T++       H HP  +E L  + GT+   F      PR+V + L     TVFP  L H   CIS   CEF+S FN+ DPG+V VS
Sbjct:  116 FTTEEN--LRANFDAEDFSVAIADITPTTTPQGAIVSGGLENLAVFGLSSVDSSFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPEGLIHGERCISDEPCEFISFFNTGDPGVVTVS 257          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A1X6P0D4_PORUM (Cupin type-1 domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P0D4_PORUM)

HSP 1 Score: 74.7 bits (182), Expect = 4.260e-13
Identity = 48/144 (33.33%), Postives = 67/144 (46.53%), Query Frame = 0
Query:   27 FGTQTNGAIRGALGDDEFLINPAEGVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPVS 170
            F T+ N  +R     ++F +  A+   T T    +    L N        V + FTR T++       H HP  +E L  + GT+   F      PR+V + L     TVFP +L H   CIS   CEF+S FN+ DPG+V VS
Sbjct:   42 FTTEEN--LRANFDPEDFSVAIADITPTTTRQGAIVSGGLENLAVFGLSSVDSAFTRFTLQPGAHNLAHTHPTASETLFSISGTMDVFFVEANETPRLVQSVLGPESVTVFPESLIHGERCISDEPCEFISFFNTGDPGVVTVS 183          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A200Q6E9_9MAGN (Germin-like protein n=1 Tax=Macleaya cordata TaxID=56857 RepID=A0A200Q6E9_9MAGN)

HSP 1 Score: 67.4 bits (163), Expect = 8.340e-11
Identity = 52/156 (33.33%), Postives = 67/156 (42.95%), Query Frame = 0
Query:   20 ALGSIPSFGTQTNGAIRGALGDDEFLINPAEGVITD---TPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEF-VSTFNSADPGLVPVSA 171
            A+G  P        A  G   D  F       V+ +   +P F+V  A +  FPAL GQ V        + ++ P  PH HPR AE L LL GTL   F       ++ T  L  G+  VFP  L H    +   D  F +S F SA+ G V V A
Sbjct:    2 AVGGDPDIVFDFLPAPNGTAIDPNFFTFTGMRVLIEEDPSPTFKVLKASMAEFPALLGQSVSYAVLEFPVGSVNP--PHTHPRSAELLFLLGGTLEVGF--VDTTNKLYTQTLQAGDLFVFPKGLVHYQYNVDPQDSSFAISAFGSANAGTVSVPA 153          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2K1ZA39_POPTR (Germin-like protein n=3 Tax=Saliceae TaxID=238069 RepID=A0A2K1ZA39_POPTR)

HSP 1 Score: 66.6 bits (161), Expect = 2.180e-10
Identity = 58/172 (33.72%), Postives = 77/172 (44.77%), Query Frame = 0
Query:    4 KTIPTFIVLL-LAVFSSALGSIPS----FGTQTNGAIRGALGDDEFLINPAEGVITDTP-NFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPV 169
            K I +F+ LL L    +AL S P     F   TN ++ G      F      GVIT  P NF +  A +  FPAL GQ V     +     + P  PH HPR AE L L+ G+L   F     +  + T  L VG+  +FP  L H     +      +S+F SA+ G V V
Sbjct:    7 KPISSFLFLLALVTAKTALASDPDILSDFIAPTNTSVDGKF----FTFTGMRGVITKFPQNFTLTKATMNEFPALNGQSVSYAVLQYPADGLNP--PHTHPRAAELLFLVYGSLEVGF--VDTKNVLYTQSLQVGDMFIFPKGLVHYQYNPTQKSAIAISSFGSANAGTVSV 170          
BLAST of Gvermi12933.t1 vs. uniprot
Match: A0A2K1YZF9_POPTR (Germin-like protein n=4 Tax=Saliceae TaxID=238069 RepID=A0A2K1YZF9_POPTR)

HSP 1 Score: 63.9 bits (154), Expect = 2.170e-9
Identity = 50/155 (32.26%), Postives = 69/155 (44.52%), Query Frame = 0
Query:   16 VFSSALGSIPSFGTQTNGAIRGALGDDEFLINPAEGVITDTP-NFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRGAEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCISTVDCEFVSTFNSADPGLVPV 169
            VF+S    +  F   TN  + G      F      GV+   P NF +  A +  FPAL GQ V     +    ++ P  PH HPR AE L L+ G+L   F     +  + T  L VG+  +FP  L H  S  +      +S+F SA+ G V V
Sbjct:   23 VFASDPDILSDFVAPTNTIVDGKF----FTYTGMRGVLAKFPQNFTLTKATMNEFPALNGQSVSYAVLQYPAGSLNP--PHTHPRAAELLFLVYGSLDVGF--VDTKNVLYTQKLQVGDMFIFPKGLVHYQSNPTKEPAVAISSFGSANAGTVSV 169          
The following BLAST results are available for this feature:
BLAST of Gvermi12933.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3IXN5_9FLOR9.120e-5756.55Putative germin-like protein 2-3 n=1 Tax=Gracilari... [more]
A0A2V3IWG7_9FLOR1.220e-5455.95Spherulin-1B n=1 Tax=Gracilariopsis chorda TaxID=4... [more]
A0A2V3IBZ5_9FLOR4.830e-3351.91Cupin type-1 domain-containing protein n=1 Tax=Gra... [more]
A0A2V3IBT1_9FLOR9.400e-2451.02Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A1X6P019_PORUM4.180e-1434.03Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A1X6P0A0_PORUM6.150e-1434.03Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A1X6P0D4_PORUM4.260e-1333.33Cupin type-1 domain-containing protein n=1 Tax=Por... [more]
A0A200Q6E9_9MAGN8.340e-1133.33Germin-like protein n=1 Tax=Macleaya cordata TaxID... [more]
A0A2K1ZA39_POPTR2.180e-1033.72Germin-like protein n=3 Tax=Saliceae TaxID=238069 ... [more]
A0A2K1YZF9_POPTR2.170e-932.26Germin-like protein n=4 Tax=Saliceae TaxID=238069 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001929GerminPRINTSPR00325GERMINcoord: 160..171
score: 26.74
coord: 127..147
score: 31.78
coord: 95..115
score: 44.08
IPR006045Cupin 1PFAMPF00190Cupin_1coord: 56..167
e-value: 6.4E-7
score: 29.1
IPR014710RmlC-like jelly roll foldGENE3D2.60.120.10Jelly Rollscoord: 34..171
e-value: 9.7E-22
score: 79.3
NoneNo IPR availablePANTHERPTHR31238GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3coord: 56..169
NoneNo IPR availablePANTHERPTHR31238:SF42GERMIN-LIKE PROTEIN 9-2-RELATEDcoord: 56..169
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..171
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 18..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..17
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
IPR011051RmlC-like cupin domain superfamilySUPERFAMILY51182RmlC-like cupinscoord: 51..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2225577..2226092 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12933.t1Gvermi12933.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 2225577..2226092 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12933.t1 ID=Gvermi12933.t1|Name=Gvermi12933.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=172bp
MMTKTIPTFIVLLLAVFSSALGSIPSFGTQTNGAIRGALGDDEFLINPAE
GVITDTPNFRVEVAELGNFPALAGQDVQTQFTRVTIKAMQPFFPHYHPRG
AEYLTLLRGTLRASFRFEGLEPRIVTNDLNVGESTVFPVALTHDVSCIST
VDCEFVSTFNSADPGLVPVSA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001929Germin
IPR006045Cupin_1
IPR014710RmlC-like_jellyroll
IPR011051RmlC_Cupin_sf