Gvermi12923.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12923.t1
Unique NameGvermi12923.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length135
Homology
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A2V3J3U8_9FLOR (DEAD-box ATP-dependent RNA helicase 1 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J3U8_9FLOR)

HSP 1 Score: 144 bits (364), Expect = 7.210e-38
Identity = 73/124 (58.87%), Postives = 93/124 (75.00%), Query Frame = 0
Query:   11 SRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN 134
            SRT DV+LCAPTGS K LAY  PI+QD+LDR+M RLRA+VV PTRDL+ QV  V   LT+  GI  LC + +++ A+E L +   EILIA PG+LV+HI NGDYL   DV YL++DESD+L+E+
Sbjct:   74 SRTGDVVLCAPTGSGKTLAYALPIIQDMLDRRMPRLRAIVVVPTRDLANQVFTVLSTLTKPFGIFTLCTIGSSAIAEEALAIPNAEILIATPGRLVDHINNGDYLKLSDVKYLVLDESDRLLED 197          
BLAST of Gvermi12923.t1 vs. uniprot
Match: R7QSB0_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QSB0_CHOCR)

HSP 1 Score: 120 bits (302), Expect = 2.640e-29
Identity = 63/120 (52.50%), Postives = 86/120 (71.67%), Query Frame = 0
Query:   15 DVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN 134
            DVILCAPTGS K LAY  PI+Q ++ RK+ RLRA++V PTRDL+ QV  VF+ LT + GI +  +  A S   E  +++  EILIA PG+LV+HI NGD L+   V YL++DESD+L+++
Sbjct:   28 DVILCAPTGSGKTLAYALPIVQGIIGRKLPRLRAIIVLPTRDLATQVAGVFKELTGNFGISVALVSGATSIVVERASLKTAEILIATPGRLVDHIENGDALSLRSVRYLVLDESDRLLQD 147          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A0L0DMX5_THETB (ATP-dependent RNA helicase DDX51 n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0DMX5_THETB)

HSP 1 Score: 89.4 bits (220), Expect = 4.000e-18
Identity = 54/136 (39.71%), Postives = 83/136 (61.03%), Query Frame = 0
Query:    5 SDETRHSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLE-------ILIAFPGQLVNHIRN-GDYLNFGDVWYLLMDESDQLV 132
            +DE R     D+ +CAPTGS K LAY  P+++ L  R + +LRAV++ PTRDL  Q   V RA+ + T +L+  +   +S AKE   +   E       ILIA PG+LV+H++   D ++F  + YL++DE+D+L+
Sbjct:  235 ADEERPDSRRDIAVCAPTGSGKTLAYVIPLVEALRTRVVPKLRAVIMVPTRDLVLQAESVVRAVAKHTDLLVCTLHGYSSFAKERAALADAETGEATVDILIATPGRLVDHVKQRDDIISFEHLKYLVIDETDKLL 370          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A507C6B9_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium microbalum TaxID=1806994 RepID=A0A507C6B9_9FUNG)

HSP 1 Score: 87.0 bits (214), Expect = 2.590e-17
Identity = 58/145 (40.00%), Postives = 85/145 (58.62%), Query Frame = 0
Query:    1 MTSGSDETRHSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAAS-TAKEGLNVQ------------KLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLV 132
            ++S S  T  SR  DV++ APTGS K L+Y  PI+Q L  R + R+RA+VV PTRDL+AQV  VF A  + T + +       S T ++G  VQ            +++ILIA PG+LV+H+R         + YL++DE+D+L+
Sbjct:  155 LSSSSFPTSASRQRDVLVSAPTGSGKTLSYVIPIVQALKARSLVRIRALVVLPTRDLAAQVRQVFVAFAKGTDLKIGFAAGGVSLTTEQGQLVQHDDLDLEEGGSSRVDILIATPGRLVDHLRLTSGFTLRHLRYLVIDEADKLL 299          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A2U1JFB0_SMIAN (Uncharacterized protein n=1 Tax=Smittium angustum TaxID=133377 RepID=A0A2U1JFB0_SMIAN)

HSP 1 Score: 85.5 bits (210), Expect = 8.790e-17
Identity = 52/136 (38.24%), Postives = 75/136 (55.15%), Query Frame = 0
Query:   10 HSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNV-------------QKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLV 132
            H    DV + APTGS K LAY  PI++ L  R +RRLRA++V PTRDL +QV  VF   T+ T I +       S +KE  N+              K+++L+  PG+L++HI          V +L+MDE+D+L+
Sbjct:  197 HQHVRDVCISAPTGSGKTLAYVIPIVERLQSRVVRRLRALIVLPTRDLVSQVKKVFDKFTRGTEIKVGIASGETSFSKEQANLVETLNFSNRMDDHSKVDVLVCTPGRLIDHISQTPNFTLKHVEFLVMDEADRLL 332          
BLAST of Gvermi12923.t1 vs. uniprot
Match: UPI001CF5B46E (ATP-dependent RNA helicase DDX51-like n=1 Tax=Acropora millepora TaxID=45264 RepID=UPI001CF5B46E)

HSP 1 Score: 85.5 bits (210), Expect = 8.870e-17
Identity = 47/128 (36.72%), Postives = 79/128 (61.72%), Query Frame = 0
Query:   15 DVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKE-----GLNV----QKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVE 133
            D+ +CAPTGS K LAY  PI+Q LL+R +R LRA++V PT+DL+ QV  VF   ++ T + +     + S +KE     G+N      ++++L+  PG+L +HI +  +     + +L++DE+D L++
Sbjct:  237 DICVCAPTGSGKTLAYVLPIIQTLLNRVVRHLRALIVLPTKDLANQVKEVFEMFSEGTNLKVGLASGSKSISKEQKELVGINSYGSNSRVDVLVCTPGRLADHIASTPHFTLQHIRFLVIDEADFLLD 364          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A7S1X954_9CHLO (Hypothetical protein n=2 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1X954_9CHLO)

HSP 1 Score: 85.1 bits (209), Expect = 1.190e-16
Identity = 51/129 (39.53%), Postives = 76/129 (58.91%), Query Frame = 0
Query:   10 HSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQK------LEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLV 132
            HSR  DV LCAPTGS K LAY  P+ Q L     RRLR +++ PTRDL+ QV  VF  L  + G+    +    +   E   + +      ++ILIA PG+L++HI++ +     DV +L++DE+D+L+
Sbjct:  189 HSRLHDVCLCAPTGSGKTLAYAIPMAQSLSRYWTRRLRGLILAPTRDLAQQVFDVFCQLAPAVGLSCGLMAGKDTIKAEAAMLVREDGSSGVDILIATPGRLMSHIQSTEGFTLHDVQFLVVDEADRLL 317          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A4W3GT19_CALMI (Uncharacterized protein n=2 Tax=Callorhinchus milii TaxID=7868 RepID=A0A4W3GT19_CALMI)

HSP 1 Score: 84.7 bits (208), Expect = 1.600e-16
Identity = 47/130 (36.15%), Postives = 79/130 (60.77%), Query Frame = 0
Query:   12 RTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLE-------ILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN 134
            R  D+ + APTGS K LA+  P+LQ L+DR + R+RA+VV PT++L+ QV  VF      TG+ ++ +    S A E  ++ ++E       I++A PG+LV+HI      +   + YL++DE+D ++++
Sbjct:  153 RPSDICVSAPTGSGKTLAFLIPVLQALMDRAVCRIRALVVLPTKELAQQVCKVFNVYADGTGVRVVLMAGQKSFAVEQTSLVEIEGYRSLVDIVVATPGRLVDHIARTPGFSLQHLRYLVIDEADTMIDS 282          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A0L0HA72_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HA72_SPIPD)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-16
Identity = 55/145 (37.93%), Postives = 80/145 (55.17%), Query Frame = 0
Query:    7 ETRHSRTI----DVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVN---------------AASTAKEGLNVQKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLV 132
            +TRHS       D+ + APTGS K LAY  PI++ LLDR + RLRA+VV PTRDL+AQV   F  L + + +  L I                 A   A E     K++I++A PG+L++H+R         + YL++DE+D+L+
Sbjct:  224 KTRHSSASIPPGDICVSAPTGSGKTLAYALPIVEALLDRIIPRLRALVVLPTRDLAAQVKATFDMLLRGSDLRALLITGQTPFALEQQQLVASEAWEVATEEHGSGKVDIVVATPGRLMDHLRGTKGFTLRHLRYLVIDEADRLL 368          
BLAST of Gvermi12923.t1 vs. uniprot
Match: A0A507F7C7_9FUNG (Uncharacterized protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F7C7_9FUNG)

HSP 1 Score: 84.3 bits (207), Expect = 2.300e-16
Identity = 54/145 (37.24%), Postives = 81/145 (55.86%), Query Frame = 0
Query:    7 ETRHSRTI----DVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVVVFPTRDLSAQVMCVFRALTQSTGILMLCIVN---------------AASTAKEGLNVQKLEILIAFPGQLVNHIRNGDYLNFGDVWYLLMDESDQLV 132
            +TRHS       D+ + APTGS K LAY  PI++ LLDR + RLRA+VV PTRDL+AQV   F  L + + + +L +                 A   A E     K++I++A PG+L++H+R         + YL++DE+D+L+
Sbjct:  226 KTRHSSASIPPGDICVSAPTGSGKTLAYALPIVEALLDRIIPRLRALVVLPTRDLAAQVKATFDMLLRGSDLRVLLLTGQTPFALEQQQLVASEAWEVATEEHGSGKVDIVVATPGRLMDHLRGTKGFTLRHLRYLVIDEADRLL 370          
The following BLAST results are available for this feature:
BLAST of Gvermi12923.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J3U8_9FLOR7.210e-3858.87DEAD-box ATP-dependent RNA helicase 1 n=1 Tax=Grac... [more]
R7QSB0_CHOCR2.640e-2952.50Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
A0A0L0DMX5_THETB4.000e-1839.71ATP-dependent RNA helicase DDX51 n=1 Tax=Thecamona... [more]
A0A507C6B9_9FUNG2.590e-1740.00Uncharacterized protein n=1 Tax=Synchytrium microb... [more]
A0A2U1JFB0_SMIAN8.790e-1738.24Uncharacterized protein n=1 Tax=Smittium angustum ... [more]
UPI001CF5B46E8.870e-1736.72ATP-dependent RNA helicase DDX51-like n=1 Tax=Acro... [more]
A0A7S1X954_9CHLO1.190e-1639.53Hypothetical protein n=2 Tax=Tetraselmis chuii Tax... [more]
A0A4W3GT19_CALMI1.600e-1636.15Uncharacterized protein n=2 Tax=Callorhinchus mili... [more]
A0A0L0HA72_SPIPD2.300e-1637.93Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A507F7C7_9FUNG2.300e-1637.24Uncharacterized protein n=1 Tax=Spizellomyces sp. ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011545DEAD/DEAH box helicase domainPFAMPF00270DEADcoord: 15..133
e-value: 9.6E-19
score: 67.8
IPR027417P-loop containing nucleoside triphosphate hydrolaseGENE3D3.40.50.300coord: 7..134
e-value: 5.6E-27
score: 96.3
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 14..133
NoneNo IPR availablePANTHERPTHR24031:SF68ATP-DEPENDENT RNA HELICASE DDX51coord: 12..133
NoneNo IPR availablePANTHERPTHR24031RNA HELICASEcoord: 12..133
IPR014001Helicase superfamily 1/2, ATP-binding domainPROSITEPS51192HELICASE_ATP_BIND_1coord: 7..134
score: 15.199484

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:2118103..2118581 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12923.t1Gvermi12923.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 2118103..2118581 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12923.t1 ID=Gvermi12923.t1|Name=Gvermi12923.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=135bp
MTSGSDETRHSRTIDVILCAPTGSRKRLAYESPILQDLLDRKMRRLRAVV
VFPTRDLSAQVMCVFRALTQSTGILMLCIVNAASTAKEGLNVQKLEILIA
FPGQLVNHIRNGDYLNFGDVWYLLMDESDQLVEN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011545DEAD/DEAH_box_helicase_dom
IPR027417P-loop_NTPase
IPR014001Helicase_ATP-bd