Gvermi12896.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12896.t1
Unique NameGvermi12896.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length304
Homology
BLAST of Gvermi12896.t1 vs. uniprot
Match: A0A2V3J1S2_9FLOR (Ribonuclease H2 subunit B n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1S2_9FLOR)

HSP 1 Score: 245 bits (625), Expect = 1.330e-76
Identity = 122/256 (47.66%), Postives = 168/256 (65.62%), Query Frame = 0
Query:    1 MAPAHPKSGLVVIPKDLTASSLPETNPSLISFEAIELPVKNTDKIVPLYIAHDHNESSVVVEFVKFTHTHGSWITVPQDFALAPHFCSDGNLTFITKVDPLFAILIVMDCNSESAQPGVFQPLDVLCTTEEGRNLSNLSSKPQIALLCDSKVAGGESFYRLSKEKTVSWILRKHQLLSQHPRLNDQCAADILCQYLTQRWATLFKSALDIRKPIAQSIPGA-DSPADLAMSIMMDGAKDNSIATSLPQYDKKRKAS 255
            MA +  +S +V +PK L      +   + +  E I+L      +++PL+ A D   S +VVE VKF H +GSW+ VP+D A  P+  S+GN+TF+T+VDPLFA+L++ DCN    +  VFQPLD LC    G NLS +    Q++ LCD+KV   ++FYRLS EKT+SW+L+KH +LS+H RLN+Q AADI+CQYL  RW T+F+ AL    P     P   +S A+LAMSIMMD AK N++A SLPQ + KRKA+
Sbjct:    1 MAASRSRSAIVALPKLLLQGDKGKNTLTKVFIEPIKLLGNEEHRLIPLHFARDSRNSLMVVELVKFAHPYGSWMIVPEDLAQPPYLSSNGNITFVTRVDPLFAVLVIADCNGTVGKTRVFQPLDSLCIANNGINLSAVCPAQQVSHLCDTKVVSDQTFYRLSDEKTLSWLLKKHSILSKHSRLNNQHAADIICQYLNHRWNTIFRRALKTSGPDGSPSPQKKESAAELAMSIMMDNAKANNLAESLPQNNMKRKAT 256          
BLAST of Gvermi12896.t1 vs. uniprot
Match: R7QL60_CHOCR (RNase_H2-Ydr279 domain-containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QL60_CHOCR)

HSP 1 Score: 157 bits (398), Expect = 5.110e-42
Identity = 82/221 (37.10%), Postives = 122/221 (55.20%), Query Frame = 0
Query:   35 IELPVK-NTDKIVPLYIAHDHNESSVVVEFVKFTHTHGSWITVPQDFALAPHFCSDGNLTFITKVDPLFAILIVMDCNSESAQPGVFQPLDVLCTTEEGRNLSNLSSKPQIALLCDSKVAGGESFYRLSKEKTVSWILRKHQLLSQHPRLNDQCAADILCQYLTQRWATLFKSAL--DIRKPIAQSIPGADSPADLAMSIMMDGAKDNSIATSLPQYDKKR 252
            IE P       +VPLYI     ++ V+VE V+F     SW  VP+   L P  CS+G++T +T+VDPLF  L++MD   E     VFQPLD LC T +G NL+ L    Q  +LCD K AGGESFY+L+ EK +SW+  KH  L +  ++    A  I+ QY+T  W    +  L  ++    +++   A +   LA++ MM+ A + + A    + D+K+
Sbjct:   92 IEFPENAKASSVVPLYILRKEEKTVVLVELVRFKSPFASWFFVPEAEELVPDVCSNGDVTMVTRVDPLFCALVLMDSLREVGDKQVFQPLDALCVTADGTNLTGLCDTRQFEMLCDVKEAGGESFYKLNDEKAMSWLQAKHGALVRESKMKSADAVGIISQYVTAHWGKQLRKQLLAEVENVDSEAHKAAKNSHSLALATMMEDAVETNQAILAEERDRKK 312          
The following BLAST results are available for this feature:
BLAST of Gvermi12896.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1S2_9FLOR1.330e-7647.66Ribonuclease H2 subunit B n=1 Tax=Gracilariopsis c... [more]
R7QL60_CHOCR5.110e-4237.10RNase_H2-Ydr279 domain-containing protein n=1 Tax=... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019024Ribonuclease H2 subunit B, wHTH domainPFAMPF09468RNase_H2-Ydr279coord: 110..186
e-value: 2.0E-8
score: 34.7
NoneNo IPR availableGENE3D1.10.20.120coord: 98..209
e-value: 3.9E-16
score: 61.4
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 280..303
IPR040456Ribonuclease H2 subunit BPANTHERPTHR13383RIBONUCLEASE H2 SUBUNIT Bcoord: 37..272

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1979489..1980400 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12896.t1Gvermi12896.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1979489..1980400 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12896.t1 ID=Gvermi12896.t1|Name=Gvermi12896.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=304bp
MAPAHPKSGLVVIPKDLTASSLPETNPSLISFEAIELPVKNTDKIVPLYI
AHDHNESSVVVEFVKFTHTHGSWITVPQDFALAPHFCSDGNLTFITKVDP
LFAILIVMDCNSESAQPGVFQPLDVLCTTEEGRNLSNLSSKPQIALLCDS
KVAGGESFYRLSKEKTVSWILRKHQLLSQHPRLNDQCAADILCQYLTQRW
ATLFKSALDIRKPIAQSIPGADSPADLAMSIMMDGAKDNSIATSLPQYDK
KRKASQKRTTTLSKKKKDVVNKQVAKWWASRKTSANARTTSSRKKALRSS
ATK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019024RNase_H2_suB_wHTH
IPR040456RNase_H2_suB