Gvermi12890.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12890.t1
Unique Name	Gvermi12890.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	251

Homology

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BLAST of Gvermi12890.t1 vs. uniprot
Match: A0A2V3IFL1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFL1_9FLOR)

HSP 1 Score: 331 bits (849), Expect = 2.870e-112
Identity = 160/222 (72.07%), Postives = 179/222 (80.63%), Query Frame = 0

Query:   29 RFCNIATHRVTGKNSLFSLVCRCDNLPEMVGRSIRFLDKDTPDTVAQENLTVDCIEHQKPRMARACVHSGRAFEREAAHVLRDCMGRRPRNPSPAGMMPFAFKTDKCETEFRELDVERLEALLVCACTQRPGYLVHPGVIQFITNGSPLGASAEQDVLETCTAEAMPQLNDACRNLPERFDLRGAQAFNVCCKRARVLFDNEKLLCQAIVPDQVDTIDLTFV 250
            R C IATHRVTGKN+LFSL+CRC +  EM+GRSIRFLD  TPDT+AQE LTV CIEH+KP MA AC+ SG  FER AAHVLR+CM RRP NPS    MPF F+ D CE+EFRELDV+R+EALLVCACTQRPGY+VHPGVIQFIT GSP GAS EQ +L  CT EA+P+L D C N+PERFDLR AQAFNVCCKR RVLF  +KL CQA VPD V  +DLTFV
Sbjct:   25 RTCRIATHRVTGKNNLFSLICRCGDGLEMLGRSIRFLDPHTPDTIAQEELTVQCIEHRKPEMAGACLKSGSEFERLAAHVLRECMDRRPENPSAEERMPFTFRRDMCESEFRELDVDRVEALLVCACTQRPGYIVHPGVIQFITTGSPNGASEEQKLLLNCTREALPRLTDTCSNMPERFDLRSAQAFNVCCKRVRVLFALDKLKCQATVPDDVTELDLTFV 246

[Close]

BLAST of Gvermi12890.t1 vs. uniprot
Match: A0A2V3IF75_9FLOR (Uncharacterized protein n=2 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IF75_9FLOR)

HSP 1 Score: 223 bits (567), Expect = 1.140e-70
Identity = 105/161 (65.22%), Postives = 124/161 (77.02%), Query Frame = 0

Query:   90 MARACVHSGRAFEREAAHVLRDCMGRRPRNPSPAGMMPFAFKTDKCETEFRELDVERLEALLVCACTQRPGYLVHPGVIQFITNGSPLGASAEQDVLETCTAEAMPQLNDACRNLPERFDLRGAQAFNVCCKRARVLFDNEKLLCQAIVPDQVDTIDLTFV 250
            MARAC  +G  FE  AA VL +CM RRP NPS  G MPF F+ D C+ +FRELD +RLE LL C C QRPGY+V+PGVIQFIT+GSP GA+ EQ +L+ CT EA+PQL++ CR +PERFDLR AQAFNVCCKRARV FD EKL CQA VPD +  +DL+FV
Sbjct:    1 MARACFRNGSEFEELAASVLHECMDRRPVNPSAEGRMPFTFRRDSCKADFRELDADRLEVLLACGCVQRPGYIVNPGVIQFITSGSPNGANEEQKMLQECTREAVPQLSETCRVMPERFDLRSAQAFNVCCKRARVQFDVEKLKCQATVPDDITQLDLSFV 161

The following BLAST results are available for this feature:

BLAST of Gvermi12890.t1 vs. uniprot

BLAST of Gvermi12890.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A2V3IFL1_9FLOR	2.870e-112	72.07	Uncharacterized protein n=1 Tax=Gracilariopsis cho...	[more]
A0A2V3IF75_9FLOR	1.140e-70	65.22	Uncharacterized protein n=2 Tax=Gracilariopsis cho...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 247..250
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 10..21
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 28..250
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..9
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 22..27
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..27

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1962222..1962974 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12890.t1	Gvermi12890.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1962222..1962974 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12890.t1 ID=Gvermi12890.t1|Name=Gvermi12890.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=251bp
MMMTFVLRFFAVVSVPTLILLASNVDARRFCNIATHRVTGKNSLFSLVCR
CDNLPEMVGRSIRFLDKDTPDTVAQENLTVDCIEHQKPRMARACVHSGRA
FEREAAHVLRDCMGRRPRNPSPAGMMPFAFKTDKCETEFRELDVERLEAL
LVCACTQRPGYLVHPGVIQFITNGSPLGASAEQDVLETCTAEAMPQLNDA
CRNLPERFDLRGAQAFNVCCKRARVLFDNEKLLCQAIVPDQVDTIDLTFV
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