Gvermi12880.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12880.t1
Unique NameGvermi12880.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length905
Homology
BLAST of Gvermi12880.t1 vs. uniprot
Match: A0A2V3J1N2_9FLOR (Protein aardvark n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1N2_9FLOR)

HSP 1 Score: 675 bits (1742), Expect = 5.210e-232
Identity = 451/610 (73.93%), Postives = 500/610 (81.97%), Query Frame = 0
Query:  296 MGVPTALRFDNLDATDNTTALPANSS-GKPPLPPPKAIHRQRSKPVPYQAHLPSERKDDAPTSVLEAAAPMDSSSSEVYNSISERGERVAAAFERLGKQTDEFPDTPSELTGGLSPKEVIIPLIVEAMHQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRTAGGIQVLVSSLKRNVHSLKVAEVGMSLTRVVAEDDRNKELFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECTSASPDGACYFLKALCNATFDSLASKTFAGRCGAVEATLRIMSDSSYREVGRVVEDACRLLRSLLDGVSQNQRNMLKHRGVAVVLDAARTHGEALAGVAEHSVAIFVNMVTIRGFVSQLQEGSGDVSQLARRLRKAHEGNPRVEAQVISFVRTLERDERSVASTGSADIRDWRTKSSIERALRPVRSLHKGRHADDDHETRLQRLRSMPLPMVRNRN 904
            M VPTALRFD++D+       P N+S GKPPLPP + IHR R++  P      S  + +   S  +A+ P+D+S SE Y SISERGERVAAAFERLGKQT E+ D+PS+L GGLSPKEVIIPLIVEAM QHRSDPKVADRALTILRRLTVSENCR+CIGENGGIEAVVEIMR+HSLR+GIQTQGCLTLANLAFRNR NKEAVMKC XXXXXXXXXXXXXXXXXXXXXXXXXXXX TNRSDAGEQETSVASGAVE                                   RLRTAGGI+VLVS+L++NV S K++EVGMSLTRVV EDDRNKELF  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +ECT+ASPDG CYFLKALCNATFDS+ASK FAGR GA+EATLRIMS+ +Y+EVGRVVEDACRLLR+LLDGV QNQRN+LKHRG+AVVLD AR HGEALAGVAEHSVAIFV+M   RGF SQ+QEGSGD++QLARRLRKAHEGNPRVE QV + +R LE DERSVAS GS+D+RDW  KSS+ERALRPVRSLH+GR + D+ E RLQRLRSMPLP+ RNR+
Sbjct:    1 MTVPTALRFDDIDSPSAIPPAPPNTSHGKPPLPPARNIHRPRTRASPPLRTTQSPERQEDVASSRDASPPIDTSLSEEYASISERGERVAAAFERLGKQTYEYQDSPSDLAGGLSPKEVIIPLIVEAMRQHRSDPKVADRALTILRRLTVSENCRKCIGENGGIEAVVEIMRSHSLRAGIQTQGCLTLANLAFRNRTNKEAVMKCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTNRSDAGEQETSVASGAVEVLLTALERYICSETVQSNALIALTNIASRSPYGMERLRTAGGIEVLVSTLQQNVRSEKLSEVGMSLTRVVVEDDRNKELFGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTVVNIMNECTTASPDGVCYFLKALCNATFDSMASKIFAGRSGAIEATLRIMSEEAYKEVGRVVEDACRLLRNLLDGVVQNQRNLLKHRGIAVVLDVARVHGEALAGVAEHSVAIFVSMAANRGFASQVQEGSGDINQLARRLRKAHEGNPRVETQVNTLIRALEHDERSVASLGSSDLRDWSNKSSLERALRPVRSLHRGR-SGDEQEKRLQRLRSMPLPLGRNRS 609          
BLAST of Gvermi12880.t1 vs. uniprot
Match: R7QFR9_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QFR9_CHOCR)

HSP 1 Score: 318 bits (816), Expect = 8.280e-94
Identity = 237/550 (43.09%), Postives = 308/550 (56.00%), Query Frame = 0
Query:  361 AAAPMDSSSSEVYNSISERGERVAAAFERLGKQTDEFPDTPSE--LTGGLSPKEVIIPLIVEAMHQHRSDPKVADRALTILRRLTVSENCRRCIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNRSDAGEQETSVASGAVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLRTAGGIQVLVSSLKRNVHSLKVAEVGMSLTRVVAEDDRNKELFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDECTSASPDGACYFLKALCNATFDSLASKTFAGRCGAVEATLRIMSDSSYREVGRVVEDACRLLRSLLDGVSQNQRNMLKHRGVAVVLDAARTHGEALAGVAEHSVAIFVNMVTIRGFVSQLQEGSGDVSQLARRLRKAHEGNPRVEAQVISFVRTLER--DERSVASTGSADIRD-----WR---TKSSIERALRPVRSLHKGRHADDDHETRLQRLRSMPLP 898
            A   +DSS  E Y S ++R ER+A A ER+ K    F  +  E       SPK  +IPLIV+A+ QH  DPKVAD+ LT LRRLTV   CRR IGE GG+EA+VE+MRAHSLR  IQTQ CL LANLA++   NK A M  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTN +  GEQ+ SV +GAVE                                   RLR+AGG+Q +++S+  N+ S +++E+ +S  +V+ E++ N+++F                                                         +  S+  + A   LKAL N+T+DSLA+KT AGR GAVEA L ++S  +++    VVEDACR+LR+L DGV  N R +++  GV  VL+AAR HG + AGVAEH VAIFVN+   +    QL+EG  D + +AR L+ AH GN RV  QV   +  LE   D+    ST S + R+     WR   T+ S E +LR  +SL K    + +  TRLQRLRS+PLP
Sbjct:   84 AGYALDSSPLEHYESKTQRSERIATALERIAKNAAFFGLSAEENACPSDTSPKTAVIPLIVDAITQHVRDPKVADQGLTTLRRLTVDPVCRRTIGECGGVEAIVEVMRAHSLRVRIQTQACLALANLAYKCPENKRAFMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFTNGAIEGEQDASVTAGAVEVLVTALEQYPKSNVVQQQCMIALTNIAAASPLGMERLRSAGGVQAVIASMHNNIRSSQLSEIALSCAKVLVEEESNQKIFGHDGGIEAITMVLDEHRGHTAIAVRGCAAFRQLAFQRENRDLLGRCGSIRAIITAMMDTASSKAETAAVLLKALSNSTYDSLANKTLAGRLGAVEAALHLISPDTFQSNTGVVEDACRVLRNLADGVQLNHRLLIEKGGVVAVLEAAREHGTSSAGVAEHCVAIFVNLSANQSLAEQLKEGGKDFAAMARELQLAHPGNDRVYKQVADLLSILEPKVDDGEPVSTESVEWRESKSCTWRETATQISFEESLRSSKSLRKTFSKEGEQLTRLQRLRSLPLP 633          
The following BLAST results are available for this feature:
BLAST of Gvermi12880.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A2V3J1N2_9FLOR5.210e-23273.93Protein aardvark n=1 Tax=Gracilariopsis chorda Tax... [more]
R7QFR9_CHOCR8.280e-9443.09Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000225ArmadilloSMARTSM00185arm_5coord: 664..707
e-value: 330.0
score: 1.5
coord: 445..487
e-value: 8.4
score: 13.8
coord: 621..663
e-value: 150.0
score: 4.2
coord: 533..576
e-value: 0.87
score: 18.6
coord: 708..753
e-value: 280.0
score: 2.1
coord: 489..531
e-value: 130.0
score: 4.5
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 456..501
score: 10.2724
IPR000225ArmadilloPROSITEPS50176ARM_REPEATcoord: 545..589
score: 9.1524
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 410..608
e-value: 9.9E-32
score: 112.5
IPR011989Armadillo-like helicalGENE3D1.25.10.10coord: 609..841
e-value: 3.0E-16
score: 61.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 306..320
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 187..217
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 105..133
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 242..278
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..356
NoneNo IPR availablePANTHERPTHR22895UNCHARACTERIZEDcoord: 588..665
coord: 411..579
IPR016024Armadillo-type foldSUPERFAMILY48371ARM repeatcoord: 413..778

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1889930..1892644 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12880.t1Gvermi12880.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1889930..1892644 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12880.t1 ID=Gvermi12880.t1|Name=Gvermi12880.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=905bp
MDHSPAPAARVRRRLRFASALSRRFSTLFSARKEHVDPPDARRTQFPSSS
HAPPLDHRPPLSRGPQNSPPTVLNVRSEPSHRLKSLINAARSVADNDDDS
ARSADPSLAGSSRTSIPVSPVTGTSQSHSTVGSVAPWDRKEHHSSSPVPS
PPGPLSVRFDVDRIKPSDHLLSQAHPSAPSPPTPTDPISHSESLATHAFD
DSQIQSPTLTPQSPELHKHSTHPAENLQSRLSSDSDSDSDSDSDQSLPSA
HSEISSPNVKYPSPTTISQPQSYNQPPAHRSFPLRLPPRARTPNSMGVPT
ALRFDNLDATDNTTALPANSSGKPPLPPPKAIHRQRSKPVPYQAHLPSER
KDDAPTSVLEAAAPMDSSSSEVYNSISERGERVAAAFERLGKQTDEFPDT
PSELTGGLSPKEVIIPLIVEAMHQHRSDPKVADRALTILRRLTVSENCRR
CIGENGGIEAVVEIMRAHSLRSGIQTQGCLTLANLAFRNRNNKEAVMKCS
GLKVVVAALSAHPNVEQIQAWGCLAIRNFTNRSDAGEQETSVASGAVEVL
LSALERYSSSETVQNNALIALTNIASRSPYGMERLRTAGGIQVLVSSLKR
NVHSLKVAEVGMSLTRVVAEDDRNKELFGQSDGIQAMTAVMDTHRGHIAI
NVKGCAAVRHLAFRRKNREIMGSCGIIRTIVCVMDECTSASPDGACYFLK
ALCNATFDSLASKTFAGRCGAVEATLRIMSDSSYREVGRVVEDACRLLRS
LLDGVSQNQRNMLKHRGVAVVLDAARTHGEALAGVAEHSVAIFVNMVTIR
GFVSQLQEGSGDVSQLARRLRKAHEGNPRVEAQVISFVRTLERDERSVAS
TGSADIRDWRTKSSIERALRPVRSLHKGRHADDDHETRLQRLRSMPLPMV
RNRN*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000225Armadillo
IPR011989ARM-like
IPR016024ARM-type_fold