Gvermi12867.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12867.t1
Unique NameGvermi12867.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length555
Homology
BLAST of Gvermi12867.t1 vs. uniprot
Match: A0A2V3J1E6_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1E6_9FLOR)

HSP 1 Score: 300 bits (769), Expect = 6.310e-91
Identity = 176/292 (60.27%), Postives = 203/292 (69.52%), Query Frame = 0
Query:  263 PLLPPARAAEQPHHPQPPVCHFSAEITNVADEHMYFSDEDEFDSQVLDASTPPPSHTAAADVLSTKVRRAVSALRSISFQSNQGEDFDTAWGQTLCVSHDKQSPSLASLASAKWRRALSRSPSRSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRERSASAHHNVRGFAALRMRANLGGAHRRSLWAGARRERQQQQQPHAVAAQLLVSGAGHGFLAASTDMAEQRQALATVAPPPDALDGPNSVQKGSVDKYVEFIHASAQRETKGRFGPRNLPSRVLRLFRRKWN 554
            P LP +  + QP         FSA+ITNV++EHMY+SDEDEFDSQ++D +  P    + +DVLSTKVRRAVSALRSISFQS Q EDFDTAWGQ L VS +K +PS ASLASAKWRRA S++ SR                                   +ERS +    VRGFAA+RMR NL G H+RSLWAGARR+R  ++QPHAVAAQLLVSG G G LAAS +M+EQRQALATVAP  DA+D  N  QKGSVDKYVEFIHASAQRE KG+FGPR+ P RVLRLFRRKWN
Sbjct:  333 PNLPQSTLSSQPLDDFVRENQFSAKITNVSEEHMYYSDEDEFDSQLVDHANSPLKDNSPSDVLSTKVRRAVSALRSISFQSTQIEDFDTAWGQALSVSQEKPNPSFASLASAKWRRARSKASSRMGGKEFECYSENDACSMRSSGSNFS--------SQKERSTNGRDQVRGFAAMRMR-NLSGPHKRSLWAGARRDR--ERQPHAVAAQLLVSGGGQGLLAASAEMSEQRQALATVAPA-DAVDARNGTQKGSVDKYVEFIHASAQREAKGKFGPRHFPGRVLRLFRRKWN 612          
BLAST of Gvermi12867.t1 vs. uniprot
Match: A0A2V3J1H7_9FLOR (Early nodulin-12A n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1H7_9FLOR)

HSP 1 Score: 193 bits (490), Expect = 5.210e-51
Identity = 99/182 (54.40%), Postives = 128/182 (70.33%), Query Frame = 0
Query:    1 LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAATDDCLDGETCASSTC-LSNSFVPGAAVLDDADPA--LGLNLDPCQTISDCQNPRNCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAICISETAVI-ADSMDEQIDDIPDSGPALPPM 178
            LAFEPC++   CQG+RSC QLA S  GSV++ DC AG+CFC   +GCA T DC            LSN+FVPGA  + ++D +  LGLNLD C++++DC+NPRNCVQ+VDG+FG+C G +CFC+  DPSC S S+CS GESCTKRE ++ AICISE A+   D   E+I +I  + P LPPM
Sbjct:   71 LAFEPCSTDLPCQGERSCVQLADSELGSVEITDCEAGLCFCADQEGCATTADCXXXXXXXXXXXXLSNAFVPGAIDISESDTSATLGLNLDRCESLADCRNPRNCVQFVDGLFGECQGTSCFCVLADPSCISISECSDGESCTKREGSSTAICISEAALENGDVTPEEITEITTNQPPLPPM 252          
BLAST of Gvermi12867.t1 vs. uniprot
Match: R7QG93_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QG93_CHOCR)

HSP 1 Score: 89.7 bits (221), Expect = 7.560e-16
Identity = 79/240 (32.92%), Postives = 109/240 (45.42%), Query Frame = 0
Query:  323 DVLSTKVRRAVSALRSISFQSNQGEDFDTAWGQTLC---VSHDKQSPSLASLASAKWRRALSRSPSRSAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSRERSASAHHNVRGFAALRMRANLGGAHRRSLW-AGARRERQQQQQPHAVAAQLLVSGAGHGFLAASTDMAEQRQALATVAPP-PDALDGPNSVQKGSVDKYVEFIHASAQRETKGRFGPRNLPSRVLR----LFRRKW 553
            D LS+KV R +S LRSISFQ+   ED DTAWGQ          K + ++ S AS +WRR   R  S++                                  R+             AL+    L G H +++W A  +R+R     P+       + G G  +LAA+T + +    +  + P  P++ D     ++ SVDKYVEFIHASAQRE+K +   RN   RVL     LFRRKW
Sbjct:  128 DALSSKVHRVLSNLRSISFQNPAVEDPDTAWGQASAHRPALTKKSANNICSTAS-RWRRPRGRISSKNGVQEFECYSEADAASMHSYTSSAKHPIPTRRYNHRD-------------ALKSIQGLTGRHHKNIWNAATKRDRTSPITPN------FLVGTGQDYLAAATTLNQPLHTVTAMVPAEPESQDS----RRRSVDKYVEFIHASAQRESKNKLLSRNFTGRVLHRAQGLFRRKW 343          
The following BLAST results are available for this feature:
BLAST of Gvermi12867.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A2V3J1E6_9FLOR6.310e-9160.27Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
A0A2V3J1H7_9FLOR5.210e-5154.40Early nodulin-12A n=1 Tax=Gracilariopsis chorda Ta... [more]
R7QG93_CHOCR7.560e-1632.92Uncharacterized protein n=1 Tax=Chondrus crispus T... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 161..283
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 175..224
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 400..430
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 225..266

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1846556..1852720 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12867.t1Gvermi12867.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1846556..1852720 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12867.t1 ID=Gvermi12867.t1|Name=Gvermi12867.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=555bp
LAFEPCASSADCQGDRSCSQLAGSASGSVDLVDCGAGMCFCTSADGCAAT
DDCLDGETCASSTCLSNSFVPGAAVLDDADPALGLNLDPCQTISDCQNPR
NCVQYVDGVFGQCSGPNCFCIKLDPSCTSASQCSQGESCTKRESANNAIC
ISETAVIADSMDEQIDDIPDSGPALPPMVNVPAMQPPAAQPSASQPPSTQ
PPAMQPAATQPPATQPPASQPPATQPPATSTAAVDVSEQPQEAETTETAE
VVETPDSEQQTQPLLPPARAAEQPHHPQPPVCHFSAEITNVADEHMYFSD
EDEFDSQVLDASTPPPSHTAAADVLSTKVRRAVSALRSISFQSNQGEDFD
TAWGQTLCVSHDKQSPSLASLASAKWRRALSRSPSRSAAAAAAAARAADH
AHAADHDAASARSSASLASGSRERSASAHHNVRGFAALRMRANLGGAHRR
SLWAGARRERQQQQQPHAVAAQLLVSGAGHGFLAASTDMAEQRQALATVA
PPPDALDGPNSVQKGSVDKYVEFIHASAQRETKGRFGPRNLPSRVLRLFR
RKWN*
back to top