Gvermi12863.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	Gvermi12863.t1
Unique Name	Gvermi12863.t1
Type	polypeptide
Organism	Gracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length	287

Homology

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A2V3J1D7_9FLOR (THO complex subunit 4 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J1D7_9FLOR)

HSP 1 Score: 321 bits (823), Expect = 3.970e-107
Identity = 200/297 (67.34%), Postives = 223/297 (75.08%), Query Frame = 0

Query:    1 MLNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADRSPEKEASLPAAKARRSISKKRKNRRK----------NNASTAAPADAQNNMRVEPAPHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNARDNSSKKSQPADDDYRDQSRSPENDTFDRKDSPFGDRNRNGQQARRGXXXXXXX-FRAPAPGANQEREERDRPDGRDGYAD 286
            M+NIDRPLDDIIKES++AKRADRAA                   PA SAP  +RSPEK+A+LPAAK+RRSI+                  ++  +A PA A  +  +EPAPH         YL SSAQ+RSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRY +GTS+CEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKN+RDN+ KKSQP D +YRD SRSP  + F+RKDSPF DRNRNGQQ RR XXXXXXX FR PAPG NQ+RE+RDR D RDGYAD
Sbjct:    1 MMNIDRPLDDIIKESLEAKRADRAARRRDQGATKRKAPNNKSRPPA-SAPPKERSPEKDATLPAAKSRRSITXXXXXXXXXXXXXXXXXXDSNGSAEPAPATASAPMEPAPH---------YLSSSAQRRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYPSGTSTCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNSRDNAPKKSQPVDAEYRDHSRSP-GEPFERKDSPFADRNRNGQQGRRXXXXXXXXXFRGPAPGPNQDREDRDRRDDRDGYAD 286

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BLAST of Gvermi12863.t1 vs. uniprot
Match: R7Q9Y4_CHOCR (Similar to Aly, THO complex subunit, putative n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q9Y4_CHOCR)

HSP 1 Score: 125 bits (313), Expect = 4.180e-30
Identity = 98/235 (41.70%), Postives = 118/235 (50.21%), Query Frame = 0

Query:    2 LNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADR-SPEKEASLPAAKARRSISK-----------------------KRKNRRKNNA--STAAPADAQNN---MRVEPAPHPI-----VTNAAPHYLPSSAQKRSN--GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT 200
            +NIDRPLD+I+KES+ A++A R A                  T  T + +  + SP     L  AK   SISK                       +R N   NNA  +  AP     N    R + AP        V N         A +R+   GVK+ VSNLHPGVT++DI ELFETVGP+K A L  + NG S+CEAEVIFE M DALEAI RYN VPLDN PL ITL T
Sbjct:    1 MNIDRPLDEIVKESVAARKAARQAKRKEIAQTKK--------TKGTDSAAVQKASPVLAQKLGVAKKEGSISKXXXXXXXXXXXXXXXXXXXXXXXRRTNGNTNNARPNGNAPRPQSRNDKPFRNDKAPRSSQHQGGVANRLSTKASGQAARRATPKGVKIRVSNLHPGVTETDIGELFETVGPIKKAHLKTFANGHSACEAEVIFERMADALEAINRYNQVPLDNHPLHITLAT 227

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A1X6P4P6_PORUM (RRM domain-containing protein n=1 Tax=Porphyra umbilicalis TaxID=2786 RepID=A0A1X6P4P6_PORUM)

HSP 1 Score: 90.1 bits (222), Expect = 2.960e-17
Identity = 90/221 (40.72%), Postives = 119/221 (53.85%), Query Frame = 0

Query:    2 LNIDRPLDDIIKESIQAKRADRAAXXXXXXXXXXXXXXXXXPTPATSAPSADRSPEKE--ASLPAAKARRS-------------ISKKRKNRRKNNASTAAPADAQNNMRVEPAPHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNAR 207
            +NIDR LDDI+KE+  ++R+ + A    XXXXXXXXXXX   T A  +    R   +   A++ A  AR S             ISKK    R    S+A  A       +E     I   AA     ++A K + G K+VV NLH GVT  DI +LF  VG L+ A++     G S+  AEV+F    DALE+IKRYN VPLDN+PL+I+L T+ S  +R
Sbjct:    4 MNIDRALDDIVKENRASRRSTKKAADGAXXXXXXXXXXXMEGTGARKSRRRRRKTGERGYAAMDAESARMSDTLSRRTAKGGGSISKKGGRARGGGLSSATVAAISRAGAME-----IERKAAA--AAANASKANAGCKIVVHNLHHGVTNGDINDLFSGVGKLQRALVIYDVRGNSTGVAEVVFARRDDALESIKRYNGVPLDNKPLRISLATSDSPTSR 217

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A7S0G117_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S0G117_9RHOD)

HSP 1 Score: 85.1 bits (209), Expect = 7.020e-17
Identity = 42/86 (48.84%), Postives = 60/86 (69.77%), Query Frame = 0

Query:  115 SSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT 200
            S +  +S G K+VV NL PGV+  DI +LF+ +GP+K A++    +G S+  AEV+F +  DAL AI +YN VPLDN+PL+I+L T
Sbjct:   28 SKSMSQSPGAKIVVGNLDPGVSNGDINDLFKGIGPIKQAMVIFNSDGKSTGSAEVVFASTDDALAAIAKYNGVPLDNRPLEISLST 113

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BLAST of Gvermi12863.t1 vs. uniprot
Match: V4UVU1_CITCL (RRM domain-containing protein n=2 Tax=Citrus TaxID=2706 RepID=V4UVU1_CITCL)

HSP 1 Score: 77.0 bits (188), Expect = 3.050e-13
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0

Query:  123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
            G K+ VSNLHPGVT  DI ELF  +G LK   +   +NG  S  AEV++    DA  A+KRYN V LD +P++I +V T ++
Sbjct:   98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A835LM92_9MAGN (RRM domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LM92_9MAGN)

HSP 1 Score: 78.2 bits (191), Expect = 3.850e-13
Identity = 41/79 (51.90%), Postives = 50/79 (63.29%), Query Frame = 0

Query:  123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTT 201
            G K+ VSNLH GVT  DI ELF  +G LK   +   +NG SS  AEVIF    DAL A+KRYN V LD +P+ I ++ T
Sbjct:   82 GAKLYVSNLHSGVTNEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGT 160

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BLAST of Gvermi12863.t1 vs. uniprot
Match: M2XDQ2_GALSU (RRM domain-containing protein n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2XDQ2_GALSU)

HSP 1 Score: 75.9 bits (185), Expect = 9.450e-13
Identity = 40/89 (44.94%), Postives = 60/89 (67.42%), Query Frame = 0

Query:  119 KRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSKNAR 207
            KR+   +V V+NL  GVT  DI +LF  VG ++ A +   +NG S+  A+V+F +   ALEAIKRYN VPLD +P++++LV+ R + +R
Sbjct:   85 KRNQITRVQVTNLALGVTNKDINDLFSEVGKMRQAFVKFDRNGRSTGIAQVVFYDRASALEAIKRYNGVPLDGKPMKLSLVSNRGRLSR 173

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A7S0D067_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0D067_MICPS)

HSP 1 Score: 76.6 bits (187), Expect = 9.710e-13
Identity = 41/75 (54.67%), Postives = 49/75 (65.33%), Query Frame = 0

Query:  125 KVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLV 199
            K+++SNLHP VT  DI ELF  VG +K A L   QNG S   AEVI     DA++AIK YN V LD +PL+I LV
Sbjct:   82 KLIISNLHPNVTNQDIKELFSQVGQVKKAGLNFDQNGRSKGTAEVILARRQDAMQAIKTYNGVKLDGRPLRIELV 156

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A067EA94_CITSI (RRM domain-containing protein n=6 Tax=Citrus TaxID=2706 RepID=A0A067EA94_CITSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.090e-12
Identity = 39/82 (47.56%), Postives = 52/82 (63.41%), Query Frame = 0

Query:  123 GVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
            G K+ VSNLHPGVT  DI ELF  +G LK   +   +NG  S  AEV++    DA  A+KRYN V LD +P++I +V T ++
Sbjct:   98 GTKLYVSNLHPGVTNDDIRELFSEIGELKRYAIHFDKNGRPSGSAEVVYARRSDAFAALKRYNNVLLDGKPMKIEVVGTNAE 179

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BLAST of Gvermi12863.t1 vs. uniprot
Match: A0A0E0HYG8_ORYNI (RRM domain-containing protein n=1 Tax=Oryza nivara TaxID=4536 RepID=A0A0E0HYG8_ORYNI)

HSP 1 Score: 73.2 bits (178), Expect = 1.560e-12
Identity = 39/90 (43.33%), Postives = 55/90 (61.11%), Query Frame = 0

Query:  115 SSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPLKSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVTTRSK 204
            ++A+    G K+ +SNL PGVT  D+ ELF  +G LK   +   ++G S   AEV+F    DALEAIKRY+ V LD  P++I L+   S+
Sbjct:   14 AAARSLETGTKLHISNLDPGVTVDDVQELFSEIGELKRYSVNYDKDGKSQGTAEVVFARKVDALEAIKRYDGVILDGNPMKIDLIGNNSE 103

The following BLAST results are available for this feature:

BLAST of Gvermi12863.t1 vs. uniprot

BLAST of Gvermi12863.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A2V3J1D7_9FLOR	3.970e-107	67.34	THO complex subunit 4 n=1 Tax=Gracilariopsis chord...	[more]
R7Q9Y4_CHOCR	4.180e-30	41.70	Similar to Aly, THO complex subunit, putative n=1 ...	[more]
A0A1X6P4P6_PORUM	2.960e-17	40.72	RRM domain-containing protein n=1 Tax=Porphyra umb...	[more]
A0A7S0G117_9RHOD	7.020e-17	48.84	Hypothetical protein (Fragment) n=1 Tax=Rhodosorus...	[more]
V4UVU1_CITCL	3.050e-13	47.56	RRM domain-containing protein n=2 Tax=Citrus TaxID...	[more]
A0A835LM92_9MAGN	3.850e-13	51.90	RRM domain-containing protein n=1 Tax=Coptis chine...	[more]
M2XDQ2_GALSU	9.450e-13	44.94	RRM domain-containing protein n=1 Tax=Galdieria su...	[more]
A0A7S0D067_MICPS	9.710e-13	54.67	Hypothetical protein n=1 Tax=Micromonas pusilla Ta...	[more]
A0A067EA94_CITSI	1.090e-12	47.56	RRM domain-containing protein n=6 Tax=Citrus TaxID...	[more]
A0A0E0HYG8_ORYNI	1.560e-12	43.33	RRM domain-containing protein n=1 Tax=Oryza nivara...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 125..197 e-value: 2.2E-12 score: 57.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 126..192 e-value: 1.1E-11 score: 44.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 124..201 score: 11.05946
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 9..214 e-value: 4.0E-15 score: 58.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 7..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 198..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 268..286
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 206..242
None	No IPR available	PANTHER	PTHR19965	RNA AND EXPORT FACTOR BINDING PROTEIN	coord: 5..273
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 106..209

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
ScGOVlb_425	contig	ScGOVlb_425:1833412..1834272 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-06-01
Diamond blastp: OGS1.0 vs UniRef90	2022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.0	2022-05-09

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
Gvermi12863.t1	Gvermi12863.t1	Gracilaria vermiculophylla HapMaleFtJ_2017 male	mRNA	ScGOVlb_425 1833412..1834272 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Gvermi12863.t1 ID=Gvermi12863.t1|Name=Gvermi12863.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=287bp
MLNIDRPLDDIIKESIQAKRADRAARRRDQATKRKTPAPKARPTPATSAP
SADRSPEKEASLPAAKARRSISKKRKNRRKNNASTAAPADAQNNMRVEPA
PHPIVTNAAPHYLPSSAQKRSNGVKVVVSNLHPGVTQSDIAELFETVGPL
KSAVLPRYQNGTSSCEAEVIFENMPDALEAIKRYNLVPLDNQPLQITLVT
TRSKNARDNSSKKSQPADDDYRDQSRSPENDTFDRKDSPFGDRNRNGQQA
RRGRRRNRRQFRAPAPGANQEREERDRPDGRDGYAD*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf