Gvermi12843.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12843.t1
Unique NameGvermi12843.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length529
Homology
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A2V3J147_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J147_9FLOR)

HSP 1 Score: 588 bits (1516), Expect = 3.100e-204
Identity = 354/561 (63.10%), Postives = 421/561 (75.04%), Query Frame = 0
Query:    1 MPEFARSPVQTLSLAPRSNLLAAQTSSNSFAIAQIAAPTASPHAFQPADDCPAPSLTSLCLASADVLYHADARGAFHRHAVTDAPSLQYSVDAAHTGHELTSITALSPDTVVVTAGKDGAVRCWDPETRQCTAKLAGHKYEVRSVAASASSDVDGSXXXXXXXXXXXXXXXXXXVRAHSSTQLHTFEGHTSWVHSVALTANXXXXXXXXXXXXXXXXXXXXXXKERSVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLFSWDCRGLLSVPSDANLLYN--ESDSLNDTASTVVDEKPG----VSDKNVAELVVDEKKS---------------------LIDTEP------DAPPSALSTPKHFETEVLDSGNPPEASRSTPATRKSEETDALKMVVSTPPEKDPRFDKSAAELVFALKRIQALEKSLQQAEQALGVKETQVAQLNKSIAEKDLLISRLQGELSSSKRLLHAANVRNLLEQNTRKADVALDYQEPVNRIGAVTDQLTALKARLDAMIATN 528
            MP+FA+  VQT+++AP SNLLAAQTSS+SFA+A+I APT SP  FQP     A SLTSLCL S +VLYHAD+RGAFHRHA++DAP+LQYSVDAAH+GHELT++TALS D++V+TAGKDG VRCWDPETRQ TA+LAGH+YEVRSVAAS+SSDVD +        XXXXXXXXXXVRAHSS ++H FEGH+ WVHSVALT  XXXXXXXXXXXXXXXXXXX   K+R+VF+GHE+RVWSVA SPDG FAVSGSTDATVRLW +G+DEGKC++LEGHRDSV+SVAA TPA +ISGCEDG LFSWDCRGLL+VP DA L+    E  ++   +S V  E+      +S + + +  +D                         LI TE       D  P +   PKH   + L S N    + S  A+  ++ T+ LK    TPP+KDPRFDKSAAELV ALK+IQ LEKSLQQA+ +L +K+TQ+ QLN+S+AEKD  ISRLQ E  SSK+LLHAANVR L  +N RKADVALDYQEPVN+IGAVTDQL+ALKARLDAMIATN
Sbjct:    1 MPDFAKGSVQTITVAPHSNLLAAQTSSDSFALARIEAPTKSPQPFQPCKTYAASSLTSLCLPSTNVLYHADSRGAFHRHAISDAPTLQYSVDAAHSGHELTTVTALSSDSLVITAGKDGTVRCWDPETRQSTARLAGHRYEVRSVAASSSSDVDATPVTIVASGXXXXXXXXXXVRAHSSKEIHVFEGHSGWVHSVALTXXXXXXXXXXXXXXXXXXXXXVAMKQRTVFSGHEFRVWSVAFSPDGSFAVSGSTDATVRLWSVGKDEGKCNILEGHRDSVISVAAHTPASVISGCEDGALFSWDCRGLLNVPKDAPLVNTQVEQKAVPAVSSAVESEQTSPRRRLSHRRIGQTPLDHXXXXXXXXXXXXXXXXXXXXXXXPLIQTEAQPKSTSDRQPFSSGKPKHVGADELRSENVSNTAHSPSASLGTQRTELLKTAAVTPPQKDPRFDKSAAELVNALKQIQTLEKSLQQAQTSLRMKDTQIEQLNRSVAEKDTFISRLQAEADSSKQLLHAANVRKLFLENPRKADVALDYQEPVNKIGAVTDQLSALKARLDAMIATN 561          
BLAST of Gvermi12843.t1 vs. uniprot
Match: R7QJ98_CHOCR (WD40-repeat containing protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7QJ98_CHOCR)

HSP 1 Score: 315 bits (808), Expect = 7.710e-98
Identity = 243/557 (43.63%), Postives = 320/557 (57.45%), Query Frame = 0
Query:    1 MPEFARSPVQTLSLAPRSNLLAAQTSSNSFAIAQIAAPTASPH---AFQPADDC-PAPSLTSLCLASADVLYHADARGAFHRHAVTDAPSLQYSVDAAHTGHELTSITALSPDTVVVTAGKDGAVRCWDPETRQCTAKLAGHKYEVRSVAASASSDVDGSXXXXXXXXXXXXXXXXXXVRAHSSTQLHTFEGHTSWVHSVAL-TANXXXXXXXXXXXXXXXXXXXXXXKERSVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGK--CHVLEGHRDSVLSVAALTPACIISGCEDG-TLFSWDC--------------RGLLSVPSDANLLYNESDSLNDTASTVVDEKPGVSDKNVAELVVDEKKSLIDTEPDAPPSALSTPKHFETEVLDSGNPPEASRSTPATRKSEE-------TDALKMVVSTPPEKDPRFDKSAAELVFALKRIQALEKSLQQAEQALGVKETQVAQLNKSIAEKDLLISRLQGELSSSKRLLHAANVRNLLEQNTRKADVALDYQEPVNRIGAVTDQLTALKARLDAMIATN 528
            MP FA  PV  L+L+P    + A  + +  ++  + A  ++P    A  PA    P  S+T+LC  S+  +Y ADARG+F R A +D  + QY+V AAH+G ELT+I ALS  + V T+GKDGAVR WDPETRQ  A+L GH+YEVR VA ++SSD  G+     XXXXXXXXXXXXXVRA S  ++H   GH  WVH+VAL  A       XXXXXXXXXXXXXX  KER V  GHEYRVW +A++ D  FA++GSTDATVR W LGE EG   CHV EGH DSVL                   LF WDC                L+ V     L+  E+ + +  A   +D +P + +K + E    EK  ++     A P  +ST   F            + R  P T  S+        TD LK   S   +++P+FDKSAAELV AL+RI+ LE +L ++++ L  +  +              +S LQ ++ SSK L++AANVR +L  N RK D +LDY+EPVN+IGAV+D+L+AL ARLDAM+AT+
Sbjct:    1 MPPFASGPVPALALSPCGTRVVAAAAHDHISLLTLPASPSAPLTSLALPPAPALFPVLSVTALCFPSSSAVYTADARGSFKRLAASDGLAEQYTVAAAHSGDELTAIAALSDSSPVATSGKDGAVRLWDPETRQSIARLTGHRYEVRDVAVASSSDSAGAAVTVVXXXXXXXXXXXXXVRASSGKEVHCLRGHAGWVHAVALGNAPGGPIALXXXXXXXXXXXXXXAMKERMVMRGHEYRVWGLALASDAAFAITGSTDATVRAWNLGEGEGAGDCHVYEGHTDSVLXXXXXXXXXXXXXXXXXXALFMWDCATLFGRDAKKEVHTETLIDVAPVPKLVEKEAVTKSVIAPKQLDTEPLIVEKQMPE----EKLPVLRETKIASPFRVSTTPAFTA----------SPRRAPITLVSDAIPDTGMTTDGLKAAASVTVDQEPKFDKSAAELVNALRRIKDLETALAESKEQLESRNREXXXXXXXXXXXXXXLSLLQRQIDSSKNLINAANVRAILAANPRKVDESLDYEEPVNKIGAVSDKLSALVARLDAMVATH 543          
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A507QUQ3_MONPU (Uncharacterized protein n=1 Tax=Monascus purpureus TaxID=5098 RepID=A0A507QUQ3_MONPU)

HSP 1 Score: 71.6 bits (174), Expect = 2.000e-9
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = 0
Query:  227 SVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLFSWDCRGLL 308
            ++  GH + V S+ VSP+G + VSGS DAT R+WK+G+ E +  VLEGH+ SV +V A     +I+GC D  +  W+  G L
Sbjct:  103 AMLLGHAHNVCSIDVSPEGDWVVSGSWDATARIWKVGKWEAET-VLEGHQGSVWTVLAYDKDTVITGCADKLIRVWNTSGAL 183          
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A135VFL9_9ARCH (Uncharacterized protein n=1 Tax=Candidatus Thorarchaeota archaeon SMTZ1-83 TaxID=1706445 RepID=A0A135VFL9_9ARCH)

HSP 1 Score: 68.2 bits (165), Expect = 1.160e-8
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0
Query:  227 SVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPA 288
            SVF GHE+ VWS+  +PDGR+ VSG  DATVR+W L +     H L GHR +V  +A ++ +
Sbjct:    5 SVFEGHEFTVWSIDFTPDGRYVVSGGQDATVRIWDL-QSGSLLHTLPGHRGAVYGIATMSDS 65          
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A8H3AT88_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3AT88_9AGAM)

HSP 1 Score: 64.7 bits (156), Expect = 3.390e-7
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 0
Query:  230 TGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSV 279
            + H   VWSVA+S DG    SGS+D TVR+WK+GED+   H+L+GH D V
Sbjct:  794 SSHSGTVWSVALSSDGHHIASGSSDCTVRIWKVGEDKSSAHLLKGHHDYV 843          
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A3E2H8Z4_SCYLI (Uncharacterized protein (Fragment) n=1 Tax=Scytalidium lignicola TaxID=5539 RepID=A0A3E2H8Z4_SCYLI)

HSP 1 Score: 60.8 bits (146), Expect = 4.710e-6
Identity = 32/82 (39.02%), Postives = 49/82 (59.76%), Query Frame = 0
Query:  227 SVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLFSWDCRGLL 308
            ++  GH + + ++ V P G+F VSGS DA+ R+W++G+ E +  VLEGH  SV +V A     II+GC D  +  +   G L
Sbjct:  103 ALLIGHAHNICALDVDPAGKFIVSGSWDASGRIWRIGKWECEA-VLEGHEGSVWTVLAYDSETIITGCADKLIRVFHINGKL 183          
BLAST of Gvermi12843.t1 vs. uniprot
Match: C1HD43_PARBA (Polyubiquitin binding protein n=5 Tax=Paracoccidioides TaxID=38946 RepID=C1HD43_PARBA)

HSP 1 Score: 60.8 bits (146), Expect = 4.720e-6
Identity = 31/83 (37.35%), Postives = 52/83 (62.65%), Query Frame = 0
Query:  227 SVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHV-LEGHRDSVLSVAALTPACIISGCEDGTLFSWDCRGLL 308
            ++  GH + V S+ V P+G++ VSGS DA+ +LW++G+ E  C V L+GH+ SV +V     + I++GC D  +  ++  G L
Sbjct:  104 AMLLGHTHNVCSIDVCPEGQWVVSGSWDASAKLWRIGKWE--CEVTLQGHQGSVWAVLIYDKSTIVTGCADQMIRIYNLTGKL 184          
BLAST of Gvermi12843.t1 vs. uniprot
Match: A0A0U1LW86_TALIS (Ubiquitin homeostasis protein lub1 n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A0U1LW86_TALIS)

HSP 1 Score: 60.8 bits (146), Expect = 4.750e-6
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0
Query:  227 SVFTGHEYRVWSVAVSPDGRFAVSGSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLFSWDCRGLL 308
            ++  GH + V S+ V P+G + VSGS DAT RLWK+G  E +   L+GH+ SV +V A     +I+GC D  +  ++  G L
Sbjct:  103 AMLLGHGHNVCSIDVCPEGGWVVSGSWDATARLWKVGIWETET-TLDGHQGSVWAVLAYDKDTVITGCADRLIRIFNTSGKL 183          
The following BLAST results are available for this feature:
BLAST of Gvermi12843.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A2V3J147_9FLOR3.100e-20463.10Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
R7QJ98_CHOCR7.710e-9843.63WD40-repeat containing protein n=1 Tax=Chondrus cr... [more]
A0A507QUQ3_MONPU2.000e-943.90Uncharacterized protein n=1 Tax=Monascus purpureus... [more]
A0A135VFL9_9ARCH1.160e-848.39Uncharacterized protein n=1 Tax=Candidatus Thorarc... [more]
A0A8H3AT88_9AGAM3.390e-754.00Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A3E2H8Z4_SCYLI4.710e-639.02Uncharacterized protein (Fragment) n=1 Tax=Scytali... [more]
C1HD43_PARBA4.720e-637.35Polyubiquitin binding protein n=5 Tax=Paracoccidio... [more]
A0A0U1LW86_TALIS4.750e-640.24Ubiquitin homeostasis protein lub1 n=2 Tax=Talarom... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 422..456
NoneNo IPR availableGENE3D1.20.5.170coord: 428..478
e-value: 3.0E-5
score: 25.9
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 353..403
NoneNo IPR availablePANTHERPTHR44019WD REPEAT-CONTAINING PROTEIN 55coord: 7..261
NoneNo IPR availablePANTHERPTHR44019:SF8WD REPEAT-CONTAINING PROTEIN 55coord: 186..326
NoneNo IPR availablePANTHERPTHR44019WD REPEAT-CONTAINING PROTEIN 55coord: 186..326
NoneNo IPR availablePANTHERPTHR44019:SF8WD REPEAT-CONTAINING PROTEIN 55coord: 7..261
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 135..176
score: 8.992876
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 229..262
score: 12.472858
NoneNo IPR availablePROSITEPS50294WD_REPEATS_REGIONcoord: 186..220
score: 10.521959
NoneNo IPR availableCDDcd00200WD40coord: 96..303
e-value: 4.54111E-52
score: 177.142
IPR020472G-protein beta WD-40 repeatPRINTSPR00320GPROTEINBRPTcoord: 206..220
score: 38.92
coord: 161..175
score: 39.02
coord: 248..262
score: 37.71
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 128..174
e-value: 2.6E-7
score: 40.3
coord: 265..303
e-value: 0.0015
score: 27.8
coord: 84..125
e-value: 0.29
score: 20.2
coord: 179..219
e-value: 2.7E-9
score: 46.9
coord: 222..261
e-value: 2.5E-9
score: 47.0
IPR001680WD40 repeatPFAMPF00400WD40coord: 182..219
e-value: 2.9E-6
score: 27.9
coord: 270..303
e-value: 0.097
score: 13.6
coord: 227..261
e-value: 8.7E-8
score: 32.7
coord: 96..125
e-value: 0.0077
score: 17.1
coord: 129..174
e-value: 1.5E-5
score: 25.6
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 229..262
score: 15.120162
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 135..183
score: 11.310488
IPR001680WD40 repeatPROSITEPS50082WD_REPEATS_2coord: 186..228
score: 12.714052
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 155..327
e-value: 4.9E-44
score: 152.3
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 80..154
e-value: 1.5E-10
score: 42.5
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 161..175
IPR019775WD40 repeat, conserved sitePROSITEPS00678WD_REPEATS_1coord: 206..220
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 96..305

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1775413..1776999 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12843.t1Gvermi12843.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1775413..1776999 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12843.t1 ID=Gvermi12843.t1|Name=Gvermi12843.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=529bp
MPEFARSPVQTLSLAPRSNLLAAQTSSNSFAIAQIAAPTASPHAFQPADD
CPAPSLTSLCLASADVLYHADARGAFHRHAVTDAPSLQYSVDAAHTGHEL
TSITALSPDTVVVTAGKDGAVRCWDPETRQCTAKLAGHKYEVRSVAASAS
SDVDGSPVTIIASGGRDKTIRLWDVRAHSSTQLHTFEGHTSWVHSVALTA
NPTPLLISCAGDKTVRVWDLVAMKERSVFTGHEYRVWSVAVSPDGRFAVS
GSTDATVRLWKLGEDEGKCHVLEGHRDSVLSVAALTPACIISGCEDGTLF
SWDCRGLLSVPSDANLLYNESDSLNDTASTVVDEKPGVSDKNVAELVVDE
KKSLIDTEPDAPPSALSTPKHFETEVLDSGNPPEASRSTPATRKSEETDA
LKMVVSTPPEKDPRFDKSAAELVFALKRIQALEKSLQQAEQALGVKETQV
AQLNKSIAEKDLLISRLQGELSSSKRLLHAANVRNLLEQNTRKADVALDY
QEPVNRIGAVTDQLTALKARLDAMIATN*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020472G-protein_beta_WD-40_rep
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR019775WD40_repeat_CS
IPR036322WD40_repeat_dom_sf