Gvermi12832.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12832.t1
Unique NameGvermi12832.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length100
Homology
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A2V3J2N4_9FLOR (Fatty acid desaturase 4-like 1, chloroplastic n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3J2N4_9FLOR)

HSP 1 Score: 122 bits (305), Expect = 1.220e-31
Identity = 61/92 (66.30%), Postives = 69/92 (75.00%), Query Frame = 0
Query:    1 LTADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            L A GDS+QST +Q+L L  FA ASL     V + +   +D   DLS I A+Y+FTDFAVGVYHHAVDNYGSKHTP VGYQIDAFQGHHKYP
Sbjct:   81 LIAQGDSLQSTPEQQLYLAAFALASLATFAQVGTLISTPLDALSDLSAIFAAYIFTDFAVGVYHHAVDNYGSKHTPFVGYQIDAFQGHHKYP 172          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A7S1TLV8_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1TLV8_9RHOD)

HSP 1 Score: 73.2 bits (178), Expect = 6.110e-14
Identity = 43/93 (46.24%), Postives = 49/93 (52.69%), Query Frame = 0
Query:    1 LTADGDSVQSTAQQ-RLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            L   GDS+        L L T A     A   V + +     +G      +A YVF DF  GVYH AVDNYGS  TP+VGYQI AFQGHHK P
Sbjct:   67 LHTQGDSLHDEPHHVALCLATLALVCANAAHVVIAVMASQASLGSAALAAVAGYVFADFGTGVYHWAVDNYGSGSTPIVGYQIAAFQGHHKSP 159          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A7J7NLE0_9MAGN (Lipid_desat domain-containing protein n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7NLE0_9MAGN)

HSP 1 Score: 71.6 bits (174), Expect = 8.660e-13
Identity = 42/92 (45.65%), Postives = 53/92 (57.61%), Query Frame = 0
Query:    4 DGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILAS---YVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            D +S +ST   R+ L +   A L   V +  +V GA D G  +  ++A    Y F D   GVYH A+DNYG   TPV G QIDAFQGHHK+P
Sbjct:   47 DNNSKKSTRSHRVWLTSGCTALL---VSLAKSVVGAADTGIYIEPVIAGLLGYFFADLGSGVYHWAIDNYGDASTPVFGSQIDAFQGHHKWP 135          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A5J4YII5_PORPP (Fatty acid desaturase 4, chloroplastic n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YII5_PORPP)

HSP 1 Score: 72.0 bits (175), Expect = 9.050e-13
Identity = 31/43 (72.09%), Postives = 34/43 (79.07%), Query Frame = 0
Query:   50 LASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            L +Y F DFA GVYH  VDNYG ++TPV GYQIDAFQGHHK P
Sbjct:  152 LVAYAFADFATGVYHWGVDNYGDRNTPVFGYQIDAFQGHHKSP 194          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A7S0HD18_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HD18_9CRYP)

HSP 1 Score: 68.2 bits (165), Expect = 1.190e-12
Identity = 41/96 (42.71%), Postives = 54/96 (56.25%), Query Frame = 0
Query:    4 DGDSVQSTAQQR-------LLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            +GD + ST +QR        LL + AA  +  L D+         V   L+ +   Y F DF  GVYH A+DNYGSK+TP+ G QI+AFQGHH+ P
Sbjct:    3 EGDILVSTNKQRAIVGVSYFLLASLAAKGVWMLPDL-----SVPSVVASLAAVFLGYEFADFGSGVYHWAMDNYGSKNTPIFGTQIEAFQGHHELP 93          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A1D1XK31_9ARAE (Transmembrane protein 189 (Fragment) n=1 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XK31_9ARAE)

HSP 1 Score: 70.5 bits (171), Expect = 3.350e-12
Identity = 41/94 (43.62%), Postives = 56/94 (59.57%), Query Frame = 0
Query:    2 TADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILAS---YVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            TADG+S++ST   R  +   AA     LV +  +V  A + G  L  ++A+   YV  D   GVYH  +DNYG+  TPV G QI+AFQGHH++P
Sbjct:   90 TADGESLRSTWAHRAWV---AAGCASVLVSLAKSVAAACESGAVLEPLVAAVVGYVLADLGTGVYHWGIDNYGTPSTPVFGSQIEAFQGHHRWP 180          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A6I9QHU1_ELAGV (fatty acid desaturase 4, chloroplastic n=1 Tax=Elaeis guineensis var. tenera TaxID=51953 RepID=A0A6I9QHU1_ELAGV)

HSP 1 Score: 68.9 bits (167), Expect = 9.390e-12
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 0
Query:    2 TADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLILAS---YVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            TA+G S+ ST   R  + +  A+ L +L    SA   AVD G     +LA+   Y+ TD   G YH A+DNYG   TP+ G QI+AFQGHH++P
Sbjct:   52 TANGSSLHSTWAHRAWVASGFASVLSSLAKSVSA---AVDSGSAFDPLLAAFLGYILTDLGTGFYHWAIDNYGGPSTPIFGRQIEAFQGHHRWP 142          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A813H682_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813H682_POLGL)

HSP 1 Score: 68.9 bits (167), Expect = 1.380e-11
Identity = 41/98 (41.84%), Postives = 57/98 (58.16%), Query Frame = 0
Query:    4 DGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGA---------VDVGCDLSLILASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            +GD ++++  QR+L+    A     L+ V S +            + V C L+L+L +  F DF  GVYH +VDNYGS  TPVVG QI+AFQGHH+ P
Sbjct:  135 EGDLLRASPPQRVLVAAMLALLAAGLIRVGSLLSXXXXXXXXAVEMSVACALALLLGAE-FADFGTGVYHFSVDNYGSASTPVVGSQIEAFQGHHEKP 231          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A813C464_9DINO (FAD4L1 protein n=1 Tax=Symbiodinium necroappetens TaxID=1628268 RepID=A0A813C464_9DINO)

HSP 1 Score: 68.9 bits (167), Expect = 1.500e-11
Identity = 39/92 (42.39%), Postives = 55/92 (59.78%), Query Frame = 0
Query:    4 DGDSVQSTAQQRLL---LLTFAAASLGALVDVFSAVHGAVDVGCDLSLILASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            DGD + ++  QRL+   ++   +A L  +  +   +     V C L+L+L    F DF  GVYH +VDNYGS  TP+VG QI+AFQGHH+ P
Sbjct:   88 DGDVLSASDPQRLVVAVMMVLLSAGLLRVASLLGPLSWQASVCCLLALVLG-VEFADFGTGVYHFSVDNYGSAETPIVGSQIEAFQGHHEEP 178          
BLAST of Gvermi12832.t1 vs. uniprot
Match: A0A3S3N2U5_9MAGN (Fatty acid desaturase 4, chloroplastic n=1 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3N2U5_9MAGN)

HSP 1 Score: 67.8 bits (164), Expect = 2.530e-11
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 0
Query:    3 ADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLI---LASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYP 92
            A+  S+QST + R  +   A+     LV +  +V GA + G  L  +   L  YV  D   GVYH A+DNYG   TPV G QI+AFQGHHK+P
Sbjct:   62 ANDPSLQSTWEHRAWV---ASGCTSVLVSLLKSVTGAANSGMWLEPLFMGLLGYVLADLGTGVYHWAIDNYGDASTPVFGSQIEAFQGHHKWP 151          
The following BLAST results are available for this feature:
BLAST of Gvermi12832.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2V3J2N4_9FLOR1.220e-3166.30Fatty acid desaturase 4-like 1, chloroplastic n=1 ... [more]
A0A7S1TLV8_9RHOD6.110e-1446.24Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7J7NLE0_9MAGN8.660e-1345.65Lipid_desat domain-containing protein n=1 Tax=King... [more]
A0A5J4YII5_PORPP9.050e-1372.09Fatty acid desaturase 4, chloroplastic n=1 Tax=Por... [more]
A0A7S0HD18_9CRYP1.190e-1242.71Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A1D1XK31_9ARAE3.350e-1243.62Transmembrane protein 189 (Fragment) n=1 Tax=Anthu... [more]
A0A6I9QHU1_ELAGV9.390e-1243.62fatty acid desaturase 4, chloroplastic n=1 Tax=Ela... [more]
A0A813H682_POLGL1.380e-1141.84Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
A0A813C464_9DINO1.500e-1142.39FAD4L1 protein n=1 Tax=Symbiodinium necroappetens ... [more]
A0A3S3N2U5_9MAGN2.530e-1144.09Fatty acid desaturase 4, chloroplastic n=1 Tax=Cin... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019547Lipid desaturase domainPFAMPF10520Lipid_desatcoord: 53..96
e-value: 2.7E-13
score: 50.4
NoneNo IPR availablePANTHERPTHR48231FAMILY NOT NAMEDcoord: 2..98
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 41..45
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 46..63
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..40
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 64..99
NoneNo IPR availableTMHMMTMhelixcoord: 16..38
NoneNo IPR availableTMHMMTMhelixcoord: 48..67

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1733558..1734082 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12832.t1Gvermi12832.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1733558..1734082 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12832.t1 ID=Gvermi12832.t1|Name=Gvermi12832.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=100bp
LTADGDSVQSTAQQRLLLLTFAAASLGALVDVFSAVHGAVDVGCDLSLIL
ASYVFTDFAVGVYHHAVDNYGSKHTPVVGYQIDAFQGHHKYPRRTGRRT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR019547Lipid_desat