Gvermi12808.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12808.t1
Unique NameGvermi12808.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length115
Homology
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BLAST of Gvermi12808.t1 vs. uniprot
Match: A0A2V3ILD7_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3ILD7_9FLOR)

HSP 1 Score: 76.3 bits (186), Expect = 1.000e-14
Identity = 33/52 (63.46%), Postives = 37/52 (71.15%), Query Frame = 0 
Query:   57 EPGCDKAFKQKAHVHXXXXXXXXXXXXCQCFCGARFRERYNMRQHQKAVHHM 108
            EPGCDK FKQKAH              C+CFCGARFRERYNM+QHQKAVH++
Sbjct:  159 EPGCDKTFKQKAHADKHVTSVHRKEKPCECFCGARFRERYNMKQHQKAVHNL 210
The following BLAST results are available for this feature:
BLAST of Gvermi12808.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3ILD7_9FLOR1.000e-1463.46Uncharacterized protein n=1 Tax=Gracilariopsis cho... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 53..78
e-value: 0.0092
score: 25.2
coord: 82..106
e-value: 36.0
score: 8.3
coord: 24..47
e-value: 0.17
score: 21.0
IPR013087Zinc finger C2H2-typePFAMPF00096zf-C2H2coord: 53..78
e-value: 0.01
score: 16.3
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 84..107
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 55..78
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 26..47
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 24..52
score: 12.549152
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 53..83
score: 13.047947
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 82..111
score: 11.364515
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 47..81
e-value: 1.5E-9
score: 39.4
coord: 82..114
e-value: 4.3E-5
score: 25.1
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 1..46
e-value: 3.7E-10
score: 42.1
NoneNo IPR availablePANTHERPTHR23226ZINC FINGER AND SCAN DOMAIN-CONTAININGcoord: 3..111
NoneNo IPR availablePANTHERPTHR23226:SF167IP01388P-RELATEDcoord: 3..111
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 3..59
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 51..103

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1583742..1584188 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12808.t1Gvermi12808.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1583742..1584188 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12808.t1 ID=Gvermi12808.t1|Name=Gvermi12808.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=115bp
LQTFGEKGNLNKHIRALHEKARPFKCSECASAFSFHDGLQRHVAMVHRER
RPFACSEPGCDKAFKQKAHVHKHVTSVHRKEKPCQCFCGARFRERYNMRQ
HQKAVHHMHRPLSS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf