Gvermi12803.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12803.t1
Unique NameGvermi12803.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length256
Homology
BLAST of Gvermi12803.t1 vs. uniprot
Match: A0A2V3IKS1_9FLOR (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IKS1_9FLOR)

HSP 1 Score: 281 bits (718), Expect = 3.220e-92
Identity = 150/255 (58.82%), Postives = 187/255 (73.33%), Query Frame = 0
Query:    1 MSQPISKPHQVSQFPLPPRRYYQSTASHPIDPPAVPSSNDSYHMFGRVYSTEHVVPSLDTAGRKRLYDPSAPPCQELRRMNASLLQLFLKLVQQLCHPITQESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRKRITENLKESLKKAWELIAEAADEVTQPSYQLSPPATAYLQSLHLQPSQQQQQPTMQRLASQPEPPRGTNPSLPFNDMMPALAPPPPTATAELLRNINTIVNDPNL 255
            M+   +KP QVSQFPLPPRRYYQS ++ P+ PP    +N SY MFGRVY+T+ V+P+L+ AGRKRLYDP+  PC ELR +N SLL+LFL LV QLC P+T ESP  PHKQII++IE TF+NMQHLIN MRPAQAA+D+K LLDNQT SRK+IT+NLK+S+K AW+LIA+AAD+++QPSYQLS  AT Y+Q L        QQP M+      +   GT  +L F+D+MPA   PP     ELL+NI  I+N P L
Sbjct:    1 MAHQSAKPQQVSQFPLPPRRYYQSISTQPLHPPXXXXANHSYSMFGRVYTTDDVLPTLEHAGRKRLYDPAGSPCSELRTLNNSLLELFLNLVDQLCDPLTHESPSDPHKQIIDRIEDTFINMQHLINTMRPAQAAMDLKALLDNQTASRKQITDNLKDSVKTAWDLIADAADKLSQPSYQLSETATTYMQRLQ----NPNQQPPMETHHQPNKVHNGTASTL-FDDLMPASPAPPKPPATELLQNITHIMNHPTL 250          
BLAST of Gvermi12803.t1 vs. uniprot
Match: A0A0L8I8Q3_OCTBM (Uncharacterized protein n=1 Tax=Octopus bimaculoides TaxID=37653 RepID=A0A0L8I8Q3_OCTBM)

HSP 1 Score: 70.1 bits (170), Expect = 4.900e-10
Identity = 48/168 (28.57%), Postives = 87/168 (51.79%), Query Frame = 0
Query:    5 ISKPHQVSQFPLPPRRY--YQSTASHPIDPPAVPSSNDSYHMFGRVYSTEHVVPSLDTAGRKRLYDPSAPPCQELRRMNASLLQLFLKLVQQLCHPITQESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRKRITENLKESLKKAWELIAEA 170
            +SK   VS FPLPP +Y  Y +  +     PA P + + Y +FG   +    + +L++ G  +LY  +    +E++++N S+L  FL L+  L     Q        + +  +   F+N+ HLIN +RP QA   +++++  Q      +  +L++ L +A ELIA++
Sbjct:    1 MSKHLGVSSFPLPPMQYVRYCTDENMAKGIPAPPPTQEDYTVFGVPSNINDPIQTLESQGLTQLYPENCNRKKEMKKLNHSILVCFLDLIDILI----QNPSSSDRNEKLNDLRLLFINLNHLINEIRPNQAREALRMMMMKQKCQTVELLNDLEKKLAEAKELIAKS 164          
BLAST of Gvermi12803.t1 vs. uniprot
Match: A0A6J2TZK7_DROLE (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Drosophila lebanonensis TaxID=7225 RepID=A0A6J2TZK7_DROLE)

HSP 1 Score: 67.4 bits (163), Expect = 1.160e-9
Identity = 46/158 (29.11%), Postives = 82/158 (51.90%), Query Frame = 0
Query:   10 QVSQFPLPPRRYYQSTASHPID----PPA--VPSSNDSYHMFGRVYSTEHVVPSLDTAGRKRLYDPSAPPCQELRRMNASLLQLFLKLVQQLCHPITQESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRKRITENLKESLK 161
            QVS  PLPP+ Y+++ ++  +     PP    PS N +  +FG  +++  +V  L++   KR+        +EL ++N SL+  FL L+  L   +  E P    ++ ++ I   FV M HLIN +RP QA   ++++++ Q   R       +++LK
Sbjct:   40 QVSSLPLPPKEYFKNYSNKAVAKGLAPPXXXAPSDNQNITVFGIQHNSNELVCPLESQNIKRIVPVHFDRRKELTKLNHSLVVTFLDLLDTLI--MCPEHP--KRREKLDHINLLFVQMNHLINELRPHQARETLRVMMELQKRQRVETISRFQDNLK 193          
BLAST of Gvermi12803.t1 vs. uniprot
Match: A0A7E6FAD1_OCTVU (uncharacterized protein LOC118765816 n=1 Tax=Octopus vulgaris TaxID=6645 RepID=A0A7E6FAD1_OCTVU)

HSP 1 Score: 68.9 bits (167), Expect = 1.170e-9
Identity = 45/162 (27.78%), Postives = 84/162 (51.85%), Query Frame = 0
Query:   11 VSQFPLPPRRY--YQSTASHPIDPPAVPSSNDSYHMFGRVYSTEHVVPSLDTAGRKRLYDPSAPPCQELRRMNASLLQLFLKLVQQLCHPITQESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRKRITENLKESLKKAWELIAEA 170
            VS FPLPP +Y  Y +  +     PA P + ++Y +FG   +    + +L++ G  +LY  +    +E++++N S+L  FL L+  L             ++ +  +   F+N+ HLIN +RP QA   +++++  Q     ++    +E L +A ELIA++
Sbjct:    7 VSSFPLPPMQYVRYCTDENMAKGIPAPPPTQENYTVFGVPSNINDPIQTLESLGLTQLYPENHNRKKEMKKLNHSILVCFLDLIDILIRNPNSSD----RQEKLNDLRLLFINLNHLINEIRPNQARETLRMMMMKQKCQTVKLLNEFEEKLAEAKELIAKS 164          
BLAST of Gvermi12803.t1 vs. uniprot
Match: A0A077WNX6_9FUNG (Mediator of RNA polymerase II transcription subunit 7 n=1 Tax=Lichtheimia ramosa TaxID=688394 RepID=A0A077WNX6_9FUNG)

HSP 1 Score: 66.2 bits (160), Expect = 2.810e-9
Identity = 41/148 (27.70%), Postives = 81/148 (54.73%), Query Frame = 0
Query:   30 IDPPAVPSSNDSYHMFGRVYSTEHVVPSLDTAGRKRLY-DPSAPPCQELRRMNASLLQLFLKLVQQLCHPITQESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRKRITENLKESLKKAWELIAEAADEVTQ 176
            ++PP  P+  +SY +F + +     + SL   G ++L+ + +  P +EL+++N SL+  +L+L+Q L      E+P   + Q IE I   F+NM H++N  RP QA   +++L++NQ   ++ +   L+   ++    + E   + T+
Sbjct:   56 LEPPPPPT--ESYTIFDQRWQVHESLQSLSDLGVRQLFPEGNIDPIRELKKLNRSLMNQYLQLLQTLV-----ENPQ-EYGQKIENISTIFINMHHILNEYRPHQARETLRLLMENQITRKREMVAELRNKSRQMLRDLQEYGQDTTK 195          
The following BLAST results are available for this feature:
BLAST of Gvermi12803.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A2V3IKS1_9FLOR3.220e-9258.82Mediator of RNA polymerase II transcription subuni... [more]
A0A0L8I8Q3_OCTBM4.900e-1028.57Uncharacterized protein n=1 Tax=Octopus bimaculoid... [more]
A0A6J2TZK7_DROLE1.160e-929.11Mediator of RNA polymerase II transcription subuni... [more]
A0A7E6FAD1_OCTVU1.170e-927.78uncharacterized protein LOC118765816 n=1 Tax=Octop... [more]
A0A077WNX6_9FUNG2.810e-927.70Mediator of RNA polymerase II transcription subuni... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR044888Mediator complex, subunit Med7 superfmailyGENE3D6.10.140.200coord: 69..168
e-value: 4.9E-17
score: 63.6
IPR009244Mediator complex, subunit Med7PFAMPF05983Med7coord: 31..165
e-value: 9.5E-28
score: 97.6
IPR009244Mediator complex, subunit Med7PANTHERPTHR21428MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 7coord: 7..177
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 192..215
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..37
IPR037212Mediator complex, subunit Med7/Med21-likeSUPERFAMILY140718Mediator hinge subcomplex-likecoord: 71..167

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1573563..1574330 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12803.t1Gvermi12803.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1573563..1574330 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12803.t1 ID=Gvermi12803.t1|Name=Gvermi12803.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=256bp
MSQPISKPHQVSQFPLPPRRYYQSTASHPIDPPAVPSSNDSYHMFGRVYS
TEHVVPSLDTAGRKRLYDPSAPPCQELRRMNASLLQLFLKLVQQLCHPIT
QESPMLPHKQIIEQIEHTFVNMQHLINVMRPAQAAIDIKILLDNQTHSRK
RITENLKESLKKAWELIAEAADEVTQPSYQLSPPATAYLQSLHLQPSQQQ
QQPTMQRLASQPEPPRGTNPSLPFNDMMPALAPPPPTATAELLRNINTIV
NDPNL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR044888Mediatior_Med7_sf
IPR009244Mediatior_Med7
IPR037212Med7/Med21-like