Gvermi12802.t1 (polypeptide) Gracilaria vermiculophylla HapMaleFtJ_2017 male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NameGvermi12802.t1
Unique NameGvermi12802.t1
Typepolypeptide
OrganismGracilaria vermiculophylla HapMaleFtJ_2017 male (Gracilaria vermiculophylla HapMaleFtJ_2017 male)
Sequence length866
Homology
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BLAST of Gvermi12802.t1 vs. uniprot
Match: A0A2V3II43_9FLOR (Zinc finger protein ZIC 3 n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3II43_9FLOR)

HSP 1 Score: 221 bits (562), Expect = 3.250e-61
Identity = 172/349 (49.28%), Postives = 206/349 (59.03%), Query Frame = 0 
Query:  535 LTKAPRPKSKSLQPCRCPHPTCGKMFSKRSNLKAHSRVHSGVLPYXXXXXXXXXXXXXXXXXXXXXXXXQAAEQSTPSPQVQNVATVSVSSVTGNLLPAPTPVVENNVLNSSPSLLPVTEQCLTPSSPLAQSSPTAINQSADALDPVGWTQHAQ--EARRYPCSYPACNALFVRFSHLLDHENSQAHHS-----PSKPNVARTLF-ANDAEQPFPLDLRANSVLSESSDETDVLS---FTLQSPRVESI--SSADVPIPDITESLWKNELQLDDPFGDLSLGL--PAKDNDLLGIEETNYSGAGLACPSEDIMYNATMEPSIAPSQAGALH---PLGIDYAMNLPSFYL 865
            LTK  RPKSKSLQPCRCPHPTCGK+FSKRSNLKAHSRVHSGVLPY XXXXXXXXXXXXXXXXXXXXXXXQ+                S           P P+  +N  N + +L+   +          QSSPTAI QS+       W  H    + RRY C+YP C A F R + LLDHENS  H++      +   +ARTLF A    Q  P+DLRANSVLS+SSD+TDV S    T  SPR   I  ++AD+ IPD+TESLWKN+L LDDPF D SL    P +D DLL I +   S       S D+  +   +PS +     A+    P+ +DYA+NL SF L
Sbjct:   20 LTKPQRPKSKSLQPCRCPHPTCGKIFSKRSNLKAHSRVHSGVLPYPXXXXXXXXXXXXXXXXXXXXXXXQSQPPXXXXXXXXXXXXTS-----------PVPLNASNANNPASTLVSDRQP--------PQSSPTAITQSSMLHQASTWLPHNPNLDNRRYNCTYPPCPATFNRLAALLDHENSAVHNNIKPAAATSAPIARTLFSAQQQAQSMPIDLRANSVLSDSSDDTDVFSSFNLTNNSPRNNPIHPAAADLSIPDLTESLWKNDLHLDDPFADFSLINIHPPRDGDLLSIADATISAIATPSASVDMYNSPAPQPSNSLINCTAVQGAQPVAVDYAVNLASFCL 349
The following BLAST results are available for this feature:
BLAST of Gvermi12802.t1 vs. uniprot
Analysis Date: 2022-06-02 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A2V3II43_9FLOR3.250e-6149.28Zinc finger protein ZIC 3 n=1 Tax=Gracilariopsis c... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typeSMARTSM00355c2h2final6coord: 579..603
e-value: 0.0015
score: 27.8
coord: 549..573
e-value: 0.02
score: 24.0
coord: 693..719
e-value: 8.7
score: 13.8
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 695..719
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 581..603
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 551..573
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 693..725
score: 10.741022
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 579..608
score: 11.1359
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 549..578
score: 13.546741
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 577..608
e-value: 2.3E-9
score: 38.7
NoneNo IPR availableGENE3D3.30.160.60Classic Zinc Fingercoord: 547..575
e-value: 1.3E-8
score: 36.6
NoneNo IPR availablePANTHERPTHR24393:SF103ZINC FINGER PROTEIN 410coord: 548..724
coord: 522..603
NoneNo IPR availablePANTHERPTHR24393ZINC FINGER PROTEINcoord: 548..724
coord: 522..603
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 564..604

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
ScGOVlb_425contigScGOVlb_425:1565451..1570156 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-06-01
Diamond blastp: OGS1.0 vs UniRef902022-06-02
Gracilaria vermiculophylla HapMaleFtJ_2017 male OGS1.02022-05-09
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
Gvermi12802.t1Gvermi12802.t1Gracilaria vermiculophylla HapMaleFtJ_2017 malemRNAScGOVlb_425 1565451..1570156 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Gvermi12802.t1 ID=Gvermi12802.t1|Name=Gvermi12802.t1|organism=Gracilaria vermiculophylla HapMaleFtJ_2017 male|type=polypeptide|length=866bp
MTPAQGTHHSDGYRRRSQQRRNCVAKRIRSGPKQCFDLFPTDVLNLLLDV
IRSFGIDENQHERKPGVLRLQSLHRMRALLPTVLYFDVFLKQYAEDVHEV
DALYPASNWDAHEYRDHSAHSPVLLRTIARSSGSQLRTLRLPLYECVGAE
TILPTVLYECDQLHSLEFDDSGRVDERIATQLAASRIHDLSVNRPGIHTM
HALRDGLKSLKRIRLCNVERAMVGPLRSLFSLSCLAQVESVQLEFCEQCG
VMVCSGGGGDESDQVLNARYDVMGLFRDMGANLAQWLPNVQTLAMSTKSA
QHFMQQDTELTRRDITAMNGMGSRMVGCWSLRSAGKEKRAHDKVQKVQLS
STSAAQLQKMQEAFHEACAAAEEVELDIGGYGMLVRAEGSGKGAMGAGRV
FVTKAKLRPLMILRLVGGGDEANAISEQGMVREVSVHFDEVMGRYSRQLR
TLWSNYAGSIERASMRWCVRSGDEKEDSDTEREREQAQLGRLRNYRMVAD
MARPNCNAAHNLATQNMNSASAPASEMTIPPTVTLTKAPRPKSKSLQPCR
CPHPTCGKMFSKRSNLKAHSRVHSGVLPYPCDFPGCTKRFRWKSSLKPHI
KVHQAAEQSTPSPQVQNVATVSVSSVTGNLLPAPTPVVENNVLNSSPSLL
PVTEQCLTPSSPLAQSSPTAINQSADALDPVGWTQHAQEARRYPCSYPAC
NALFVRFSHLLDHENSQAHHSPSKPNVARTLFANDAEQPFPLDLRANSVL
SESSDETDVLSFTLQSPRVESISSADVPIPDITESLWKNELQLDDPFGDL
SLGLPAKDNDLLGIEETNYSGAGLACPSEDIMYNATMEPSIAPSQAGALH
PLGIDYAMNLPSFYL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf